Wall clock time and date at job start Mon Mar 30 2020 02:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.30840 * 125.89942 * 2 1 4 4 N 1.40084 * 108.20453 * 180.02562 * 3 2 1 5 5 C 1.46501 * 126.03816 * 179.97438 * 4 3 2 6 6 C 1.34945 * 107.92573 * 359.76062 * 4 3 2 7 7 C 1.35314 * 107.74802 * 0.39058 * 6 4 3 8 8 C 1.50696 * 126.04324 * 179.87745 * 7 6 4 9 9 H 1.08999 * 109.47358 * 144.68469 * 8 7 6 10 10 O 1.42903 * 109.47131 * 24.68110 * 8 7 6 11 11 C 1.50707 * 109.47163 * 264.68913 * 8 7 6 12 12 H 1.07995 * 119.99310 * 359.97438 * 11 8 7 13 13 C 1.37872 * 119.99931 * 179.97438 * 11 8 7 14 14 N 1.31515 * 120.00169 * 359.97438 * 13 11 8 15 15 Si 1.86805 * 119.99871 * 179.97438 * 13 11 8 16 16 H 1.48504 * 109.46985 * 89.99971 * 15 13 11 17 17 H 1.48502 * 109.47121 * 210.00067 * 15 13 11 18 18 H 1.48504 * 109.47079 * 330.00105 * 15 13 11 19 19 H 1.08994 * 109.47509 * 269.97349 * 1 2 3 20 20 H 1.09007 * 109.47720 * 29.97589 * 1 2 3 21 21 H 1.09003 * 109.47489 * 149.97038 * 1 2 3 22 22 H 1.09004 * 109.47048 * 89.97643 * 5 4 3 23 23 H 1.08994 * 109.47610 * 209.97772 * 5 4 3 24 24 H 1.09009 * 109.47052 * 329.97925 * 5 4 3 25 25 H 1.08011 * 126.12641 * 180.23659 * 6 4 3 26 26 H 0.96700 * 114.00311 * 300.00591 * 10 8 7 27 27 H 0.96998 * 119.99752 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6341 -0.0006 5 6 4.7899 1.5007 -0.0013 6 6 3.6141 -0.7153 0.0044 7 6 2.3271 -1.1330 -0.0007 8 6 1.8598 -2.5657 -0.0005 9 1 0.9473 -2.6502 0.5896 10 8 2.8734 -3.3972 0.5681 11 6 1.5854 -3.0049 -1.4158 12 1 1.7341 -2.3153 -2.2335 13 6 1.1446 -4.2869 -1.6665 14 7 0.9640 -5.1268 -0.6707 15 14 0.8038 -4.8311 -3.4208 16 1 2.0396 -5.4070 -4.0093 17 1 -0.2695 -5.8574 -3.4210 18 1 0.3704 -3.6613 -4.2265 19 1 -0.3634 -0.0005 1.0276 20 1 -0.3635 0.8902 -0.5135 21 1 -0.3634 -0.8897 -0.5143 22 1 5.0831 1.7161 1.0262 23 1 5.6091 0.9979 -0.5151 24 1 4.5562 2.4330 -0.5156 25 1 4.4891 -1.3486 0.0089 26 1 3.7154 -3.3717 0.0931 27 1 0.6535 -6.0287 -0.8472 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129063102.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:43 Heat of formation + Delta-G solvation = 22.059720 kcal Electronic energy + Delta-G solvation = -12345.233685 eV Core-core repulsion = 10104.893344 eV Total energy + Delta-G solvation = -2240.340341 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.50164 -35.56059 -33.28781 -32.09020 -29.72153 -28.99996 -26.64094 -24.72145 -22.39231 -19.71003 -18.84677 -16.93775 -16.23450 -14.93108 -14.56987 -14.24265 -13.70495 -13.15819 -12.95603 -12.64132 -12.44648 -11.79380 -11.64505 -11.40720 -11.10086 -10.91153 -10.88629 -10.20073 -10.10791 -9.10755 -8.60453 -8.51860 -8.27007 -7.38621 -5.95104 -4.13262 2.54059 3.10456 3.30363 3.37433 3.40774 3.61496 4.45060 4.93450 5.29309 5.35334 5.48651 5.54879 5.58924 5.94109 6.23400 6.30156 6.39276 6.67787 6.70283 6.85524 7.44825 7.64619 7.83155 7.91907 8.24862 8.41936 8.90293 9.40076 9.62834 11.07522 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.043646 B = 0.010864 C = 0.010444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.372393 B = 2576.816022 C = 2680.226464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.078 3.922 3 N -0.317 5.317 4 N -0.393 5.393 5 C 0.111 3.889 6 C 0.034 3.966 7 C -0.212 4.212 8 C 0.294 3.706 9 H 0.065 0.935 10 O -0.562 6.562 11 C -0.556 4.556 12 H 0.055 0.945 13 C 0.078 3.922 14 N -0.861 5.861 15 Si 0.888 3.112 16 H -0.280 1.280 17 H -0.285 1.285 18 H -0.274 1.274 19 H 0.068 0.932 20 H 0.061 0.939 21 H 0.089 0.911 22 H 0.064 0.936 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.165 0.835 26 H 0.342 0.658 27 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.655 8.437 0.436 9.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.088 4.088 3 N -0.141 5.141 4 N -0.177 5.177 5 C -0.031 4.031 6 C -0.109 4.109 7 C -0.223 4.223 8 C 0.235 3.765 9 H 0.082 0.918 10 O -0.364 6.364 11 C -0.594 4.594 12 H 0.073 0.927 13 C -0.127 4.127 14 N -0.498 5.498 15 Si 0.715 3.285 16 H -0.206 1.206 17 H -0.211 1.211 18 H -0.199 1.199 19 H 0.087 0.913 20 H 0.080 0.920 21 H 0.108 0.892 22 H 0.082 0.918 23 H 0.098 0.902 24 H 0.098 0.902 25 H 0.182 0.818 26 H 0.186 0.814 27 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.291 9.472 0.930 10.440 hybrid contribution 0.445 -1.031 -1.465 1.846 sum 4.735 8.441 -0.535 9.693 Atomic orbital electron populations 1.20154 0.87141 1.03351 1.02234 1.22160 0.96746 0.90410 0.99461 1.77078 0.86589 1.23165 1.27252 1.48141 1.04940 1.04701 1.59950 1.21620 0.84347 0.94789 1.02315 1.22051 0.99537 0.84074 1.05233 1.21581 0.91473 0.99675 1.09524 1.17817 0.87089 0.78067 0.93516 0.91762 1.86590 1.23399 1.69914 1.56541 1.21597 1.47401 0.97635 0.92816 0.92703 1.25049 0.94308 0.96681 0.96686 1.70075 1.43590 1.05625 1.30477 0.86688 0.78022 0.78464 0.85305 1.20649 1.21124 1.19852 0.91329 0.91996 0.89178 0.91772 0.90174 0.90168 0.81805 0.81432 0.93008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.27 10.21 36.00 0.37 -0.91 15 2 C 0.08 1.67 7.22 -82.41 -0.59 1.08 15 3 N -0.32 -6.53 12.58 33.67 0.42 -6.11 15 4 N -0.39 -7.15 4.01 -68.16 -0.27 -7.42 15 5 C 0.11 1.35 11.47 59.85 0.69 2.03 15 6 C 0.03 0.66 10.77 -17.23 -0.19 0.48 15 7 C -0.21 -4.79 5.17 -105.06 -0.54 -5.33 15 8 C 0.29 7.57 2.95 -29.03 -0.09 7.48 15 9 H 0.06 1.80 8.09 -51.93 -0.42 1.38 15 10 O -0.56 -14.50 12.51 -35.23 -0.44 -14.94 15 11 C -0.56 -15.29 8.75 -34.44 -0.30 -15.59 15 12 H 0.05 1.53 7.74 -52.49 -0.41 1.12 15 13 C 0.08 2.18 5.40 -17.82 -0.10 2.08 15 14 N -0.86 -25.22 12.84 55.43 0.71 -24.50 15 15 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 15 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 17 H -0.29 -6.74 7.11 56.52 0.40 -6.33 15 18 H -0.27 -6.47 7.11 56.52 0.40 -6.07 15 19 H 0.07 1.12 8.14 -51.93 -0.42 0.70 15 20 H 0.06 1.00 8.14 -51.93 -0.42 0.57 15 21 H 0.09 1.74 7.96 -51.93 -0.41 1.32 15 22 H 0.06 0.67 8.14 -51.93 -0.42 0.25 15 23 H 0.08 0.77 8.14 -51.93 -0.42 0.35 15 24 H 0.08 0.89 8.14 -51.92 -0.42 0.47 15 25 H 0.16 2.70 7.44 -52.48 -0.39 2.31 15 26 H 0.34 7.67 8.10 45.56 0.37 8.04 15 27 H 0.26 7.21 8.31 -40.82 -0.34 6.87 15 LS Contribution 243.09 15.07 3.66 3.66 Total: -1.00 -32.89 243.09 -4.20 -37.09 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -2.51 Total: 4.76 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -0.75 Total: -8.68 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: 0.86 Total: -38.03 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -0.44 Total: -14.94 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -32.89 -4.20 -37.09 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129063102.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.145 kcal (2) G-P(sol) polarization free energy of solvation -32.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds