Wall clock time and date at job start Mon Mar 30 2020 02:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.30840 * 125.89942 * 2 1 4 4 N 1.40084 * 108.20453 * 180.02562 * 3 2 1 5 5 C 1.46501 * 126.03816 * 179.97438 * 4 3 2 6 6 C 1.34945 * 107.92573 * 359.76062 * 4 3 2 7 7 C 1.35314 * 107.74802 * 0.39058 * 6 4 3 8 8 C 1.50696 * 126.04324 * 179.87745 * 7 6 4 9 9 H 1.08999 * 109.47358 * 144.68469 * 8 7 6 10 10 O 1.42903 * 109.47131 * 24.68110 * 8 7 6 11 11 C 1.50707 * 109.47163 * 264.68913 * 8 7 6 12 12 H 1.07995 * 119.99310 * 359.97438 * 11 8 7 13 13 C 1.37872 * 119.99931 * 179.97438 * 11 8 7 14 14 N 1.31515 * 120.00169 * 359.97438 * 13 11 8 15 15 Si 1.86805 * 119.99871 * 179.97438 * 13 11 8 16 16 H 1.48504 * 109.46985 * 89.99971 * 15 13 11 17 17 H 1.48502 * 109.47121 * 210.00067 * 15 13 11 18 18 H 1.48504 * 109.47079 * 330.00105 * 15 13 11 19 19 H 1.08994 * 109.47509 * 269.97349 * 1 2 3 20 20 H 1.09007 * 109.47720 * 29.97589 * 1 2 3 21 21 H 1.09003 * 109.47489 * 149.97038 * 1 2 3 22 22 H 1.09004 * 109.47048 * 89.97643 * 5 4 3 23 23 H 1.08994 * 109.47610 * 209.97772 * 5 4 3 24 24 H 1.09009 * 109.47052 * 329.97925 * 5 4 3 25 25 H 1.08011 * 126.12641 * 180.23659 * 6 4 3 26 26 H 0.96700 * 114.00311 * 300.00591 * 10 8 7 27 27 H 0.96998 * 119.99752 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6341 -0.0006 5 6 4.7899 1.5007 -0.0013 6 6 3.6141 -0.7153 0.0044 7 6 2.3271 -1.1330 -0.0007 8 6 1.8598 -2.5657 -0.0005 9 1 0.9473 -2.6502 0.5896 10 8 2.8734 -3.3972 0.5681 11 6 1.5854 -3.0049 -1.4158 12 1 1.7341 -2.3153 -2.2335 13 6 1.1446 -4.2869 -1.6665 14 7 0.9640 -5.1268 -0.6707 15 14 0.8038 -4.8311 -3.4208 16 1 2.0396 -5.4070 -4.0093 17 1 -0.2695 -5.8574 -3.4210 18 1 0.3704 -3.6613 -4.2265 19 1 -0.3634 -0.0005 1.0276 20 1 -0.3635 0.8902 -0.5135 21 1 -0.3634 -0.8897 -0.5143 22 1 5.0831 1.7161 1.0262 23 1 5.6091 0.9979 -0.5151 24 1 4.5562 2.4330 -0.5156 25 1 4.4891 -1.3486 0.0089 26 1 3.7154 -3.3717 0.0931 27 1 0.6535 -6.0287 -0.8472 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129063102.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:42 Heat of formation + Delta-G solvation = -2.521455 kcal Electronic energy + Delta-G solvation = -12346.299605 eV Core-core repulsion = 10104.893344 eV Total energy + Delta-G solvation = -2241.406261 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.03242 -37.51880 -34.71166 -34.20890 -31.36372 -30.38386 -28.51414 -26.24651 -24.19983 -21.29087 -20.42815 -19.01065 -17.76793 -16.62930 -16.28181 -16.03226 -15.33151 -14.80920 -14.39894 -14.27110 -13.77132 -13.43448 -13.12162 -12.96488 -12.83551 -12.77557 -12.73010 -12.06901 -11.79862 -11.07402 -10.70101 -10.24957 -10.00215 -9.04048 -8.04932 -6.31767 1.02679 1.42728 1.44019 1.54714 1.81334 1.95285 2.46105 3.17001 3.72773 4.06856 4.31219 4.39442 4.48134 4.54566 4.69217 4.80224 4.84477 4.99253 5.14610 5.26560 5.69830 5.83196 5.87126 6.16957 6.31700 6.78080 6.86962 7.38594 7.60166 8.96456 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.043646 B = 0.010864 C = 0.010444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.372393 B = 2576.816022 C = 2680.226464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.060 3.940 3 N -0.331 5.331 4 N -0.385 5.385 5 C 0.098 3.902 6 C 0.050 3.950 7 C -0.255 4.255 8 C 0.303 3.697 9 H 0.028 0.972 10 O -0.577 6.577 11 C -0.563 4.563 12 H 0.047 0.953 13 C 0.030 3.970 14 N -0.899 5.899 15 Si 0.955 3.045 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.271 1.271 19 H 0.082 0.918 20 H 0.081 0.919 21 H 0.069 0.931 22 H 0.085 0.915 23 H 0.110 0.890 24 H 0.091 0.909 25 H 0.195 0.805 26 H 0.356 0.644 27 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.958 9.391 -0.395 11.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.105 4.105 3 N -0.156 5.156 4 N -0.168 5.168 5 C -0.042 4.042 6 C -0.096 4.096 7 C -0.266 4.266 8 C 0.244 3.756 9 H 0.046 0.954 10 O -0.381 6.381 11 C -0.601 4.601 12 H 0.065 0.935 13 C -0.173 4.173 14 N -0.536 5.536 15 Si 0.780 3.220 16 H -0.198 1.198 17 H -0.207 1.207 18 H -0.195 1.195 19 H 0.100 0.900 20 H 0.100 0.900 21 H 0.088 0.912 22 H 0.103 0.897 23 H 0.129 0.871 24 H 0.110 0.890 25 H 0.212 0.788 26 H 0.202 0.798 27 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.612 10.467 0.094 11.877 hybrid contribution 0.150 -1.248 -1.157 1.708 sum 5.762 9.219 -1.063 10.923 Atomic orbital electron populations 1.20156 0.86009 1.03263 1.03139 1.22491 0.97965 0.90248 0.99806 1.77019 0.87798 1.23000 1.27793 1.48617 1.05571 1.04956 1.57668 1.22135 0.82879 0.94749 1.04392 1.22408 0.99358 0.85090 1.02713 1.21331 0.93428 0.98282 1.13598 1.17407 0.86118 0.80205 0.91867 0.95450 1.86518 1.24193 1.70412 1.56953 1.21809 1.47132 0.97648 0.93521 0.93457 1.25825 0.94012 0.96731 1.00687 1.70198 1.44752 1.06008 1.32688 0.85626 0.78073 0.77970 0.80290 1.19796 1.20699 1.19516 0.89965 0.89998 0.91169 0.89671 0.87114 0.89039 0.78849 0.79850 0.92922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.46 10.21 71.23 0.73 -1.73 15 2 C 0.06 2.54 7.22 43.10 0.31 2.85 15 3 N -0.33 -13.16 12.58 -47.39 -0.60 -13.75 15 4 N -0.38 -12.98 4.01 -369.55 -1.48 -14.47 15 5 C 0.10 1.99 11.47 127.77 1.47 3.46 15 6 C 0.05 1.84 10.77 83.54 0.90 2.74 15 7 C -0.26 -11.51 5.17 -20.15 -0.10 -11.61 15 8 C 0.30 15.92 2.95 29.10 0.09 16.01 15 9 H 0.03 1.62 8.09 -2.39 -0.02 1.60 15 10 O -0.58 -29.98 12.51 -148.98 -1.86 -31.84 15 11 C -0.56 -31.28 8.75 25.60 0.22 -31.06 15 12 H 0.05 2.65 7.74 -2.91 -0.02 2.62 15 13 C 0.03 1.65 5.40 84.65 0.46 2.11 15 14 N -0.90 -53.35 12.84 21.45 0.28 -53.07 15 15 Si 0.96 43.47 29.54 68.60 2.03 45.50 15 16 H -0.27 -11.98 7.11 99.48 0.71 -11.28 15 17 H -0.28 -12.54 7.11 99.48 0.71 -11.83 15 18 H -0.27 -12.06 7.11 99.48 0.71 -11.35 15 19 H 0.08 2.71 8.14 -2.39 -0.02 2.69 15 20 H 0.08 2.59 8.14 -2.38 -0.02 2.57 15 21 H 0.07 2.81 7.96 -2.39 -0.02 2.79 15 22 H 0.08 1.44 8.14 -2.39 -0.02 1.42 15 23 H 0.11 1.61 8.14 -2.39 -0.02 1.60 15 24 H 0.09 1.70 8.14 -2.38 -0.02 1.68 15 25 H 0.19 5.80 7.44 -2.90 -0.02 5.78 15 26 H 0.36 15.79 8.10 -74.06 -0.60 15.19 15 27 H 0.26 14.66 8.31 -92.71 -0.77 13.89 15 Total: -1.00 -70.49 243.09 3.00 -67.49 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: 0.57 Total: 17.38 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: 4.07 Total: -17.23 kcal Atomic # 7 Polarization: -79.49 SS G_CDS: -1.80 Total: -81.29 kcal Atomic # 8 Polarization: -29.98 SS G_CDS: -1.86 Total: -31.84 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -70.49 3.00 -67.49 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129063102.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.967 kcal (2) G-P(sol) polarization free energy of solvation -70.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds