Wall clock time and date at job start Mon Mar 30 2020 02:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30844 * 125.89476 * 2 1 4 4 N 1.40083 * 108.20198 * 180.02562 * 3 2 1 5 5 C 1.46504 * 126.03812 * 179.97438 * 4 3 2 6 6 C 1.34951 * 107.92726 * 359.97438 * 4 3 2 7 7 C 1.35320 * 107.74569 * 0.02562 * 6 4 3 8 8 C 1.50697 * 126.04023 * 180.02562 * 7 6 4 9 9 H 1.08996 * 109.47280 * 214.97431 * 8 7 6 10 10 O 1.42904 * 109.46949 * 334.97331 * 8 7 6 11 11 C 1.50699 * 109.47328 * 94.97111 * 8 7 6 12 12 H 1.08007 * 119.99768 * 359.97438 * 11 8 7 13 13 C 1.37870 * 120.00161 * 180.02562 * 11 8 7 14 14 N 1.31515 * 120.00218 * 180.02562 * 13 11 8 15 15 Si 1.86802 * 120.00069 * 359.97438 * 13 11 8 16 16 H 1.48507 * 109.46592 * 90.00414 * 15 13 11 17 17 H 1.48497 * 109.47247 * 209.99976 * 15 13 11 18 18 H 1.48490 * 109.47242 * 330.00529 * 15 13 11 19 19 H 1.09006 * 109.47315 * 89.97776 * 1 2 3 20 20 H 1.08994 * 109.47486 * 209.97447 * 1 2 3 21 21 H 1.09006 * 109.47537 * 329.97908 * 1 2 3 22 22 H 1.09005 * 109.46927 * 90.02517 * 5 4 3 23 23 H 1.08994 * 109.47314 * 210.02353 * 5 4 3 24 24 H 1.08998 * 109.46715 * 330.02835 * 5 4 3 25 25 H 1.07996 * 126.12664 * 179.97438 * 6 4 3 26 26 H 0.96699 * 113.99859 * 60.00298 * 10 8 7 27 27 H 0.96996 * 120.00803 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0600 0.0000 4 7 3.6087 0.6342 -0.0006 5 6 4.7899 1.5009 -0.0013 6 6 3.6142 -0.7153 -0.0004 7 6 2.3271 -1.1330 -0.0002 8 6 1.8599 -2.5657 0.0006 9 1 0.9468 -2.6505 -0.5885 10 8 2.8730 -3.3974 -0.5688 11 6 1.5870 -3.0043 1.4162 12 1 1.7373 -2.3147 2.2337 13 6 1.1465 -4.2863 1.6680 14 7 0.9078 -4.6689 2.9034 15 14 0.8873 -5.4794 0.2541 16 1 2.1449 -6.2274 0.0009 17 1 -0.1947 -6.4343 0.6043 18 1 0.5058 -4.7249 -0.9666 19 1 -0.3634 0.0004 -1.0277 20 1 -0.3634 -0.8901 0.5134 21 1 -0.3634 0.8898 0.5142 22 1 5.0836 1.7156 1.0262 23 1 5.6089 0.9985 -0.5158 24 1 4.5558 2.4335 -0.5148 25 1 4.4891 -1.3484 -0.0011 26 1 3.7153 -3.3717 -0.0947 27 1 0.5983 -5.5709 3.0806 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129063290.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:45 Heat of formation + Delta-G solvation = 24.885404 kcal Electronic energy + Delta-G solvation = -12387.457906 eV Core-core repulsion = 10147.240095 eV Total energy + Delta-G solvation = -2240.217811 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.61419 -36.00872 -33.40443 -32.22916 -29.90689 -29.13180 -27.03597 -24.81952 -22.21568 -19.80273 -18.97060 -17.37867 -16.28780 -15.02138 -14.85229 -14.17446 -13.89657 -13.21173 -13.08369 -12.76470 -12.65774 -12.01422 -11.73077 -11.58670 -11.42673 -11.07937 -10.73720 -10.25194 -9.86186 -9.20305 -8.69348 -8.62804 -8.60028 -7.47170 -6.09364 -4.20296 2.45752 3.02418 3.46837 3.48666 3.50632 3.63591 4.52233 4.86476 5.18018 5.31353 5.39034 5.49221 5.52542 5.82936 5.95812 6.15604 6.25688 6.45270 6.58967 6.69903 7.31757 7.37527 7.58666 7.64305 8.30657 8.35399 8.86126 9.02861 9.53718 11.00999 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.047787 B = 0.011510 C = 0.010796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.788412 B = 2432.004732 C = 2592.856629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.081 3.919 3 N -0.314 5.314 4 N -0.391 5.391 5 C 0.111 3.889 6 C 0.040 3.960 7 C -0.208 4.208 8 C 0.258 3.742 9 H 0.068 0.932 10 O -0.584 6.584 11 C -0.547 4.547 12 H 0.073 0.927 13 C 0.081 3.919 14 N -0.893 5.893 15 Si 0.911 3.089 16 H -0.279 1.279 17 H -0.305 1.305 18 H -0.267 1.267 19 H 0.068 0.932 20 H 0.090 0.910 21 H 0.064 0.936 22 H 0.066 0.934 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.166 0.834 26 H 0.359 0.641 27 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.067 7.802 -6.200 11.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.085 4.085 3 N -0.138 5.138 4 N -0.175 5.175 5 C -0.031 4.031 6 C -0.104 4.104 7 C -0.219 4.219 8 C 0.200 3.800 9 H 0.086 0.914 10 O -0.390 6.390 11 C -0.585 4.585 12 H 0.091 0.909 13 C -0.123 4.123 14 N -0.531 5.531 15 Si 0.741 3.259 16 H -0.205 1.205 17 H -0.233 1.233 18 H -0.192 1.192 19 H 0.087 0.913 20 H 0.109 0.891 21 H 0.083 0.917 22 H 0.084 0.916 23 H 0.099 0.901 24 H 0.099 0.901 25 H 0.183 0.817 26 H 0.205 0.795 27 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.719 8.898 -6.516 11.996 hybrid contribution 0.513 -1.341 -0.022 1.436 sum 5.232 7.557 -6.538 11.280 Atomic orbital electron populations 1.20184 0.87048 1.03694 1.02182 1.22145 0.96792 0.90278 0.99250 1.77110 0.86518 1.23054 1.27076 1.48141 1.05050 1.04659 1.59626 1.21648 0.84184 0.94728 1.02582 1.22024 0.99389 0.84245 1.04704 1.21065 0.91631 0.98565 1.10657 1.18339 0.86995 0.80444 0.94246 0.91404 1.86402 1.24691 1.69416 1.58490 1.21491 1.46596 0.98653 0.91749 0.90894 1.25041 0.93174 0.98299 0.95825 1.69957 1.44644 1.18992 1.19482 0.86285 0.77155 0.80026 0.82452 1.20491 1.23339 1.19160 0.91321 0.89111 0.91714 0.91551 0.90118 0.90081 0.81678 0.79505 0.92561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.28 10.21 36.00 0.37 -0.91 15 2 C 0.08 1.69 7.22 -82.41 -0.59 1.10 15 3 N -0.31 -6.31 12.58 33.67 0.42 -5.89 15 4 N -0.39 -6.89 4.01 -68.16 -0.27 -7.16 15 5 C 0.11 1.29 11.47 59.85 0.69 1.97 15 6 C 0.04 0.74 10.78 -17.22 -0.19 0.56 15 7 C -0.21 -4.52 5.17 -105.05 -0.54 -5.06 15 8 C 0.26 6.18 2.42 -29.04 -0.07 6.11 15 9 H 0.07 1.68 7.15 -51.93 -0.37 1.31 15 10 O -0.58 -13.29 10.82 -35.23 -0.38 -13.67 15 11 C -0.55 -15.22 9.33 -34.44 -0.32 -15.54 15 12 H 0.07 2.25 7.98 -52.48 -0.42 1.83 15 13 C 0.08 2.31 5.47 -17.82 -0.10 2.21 15 14 N -0.89 -27.05 13.96 55.43 0.77 -26.28 15 15 Si 0.91 22.94 26.18 -169.99 -4.45 18.49 15 16 H -0.28 -7.00 7.11 56.52 0.40 -6.60 15 17 H -0.31 -7.63 7.11 56.52 0.40 -7.23 15 18 H -0.27 -6.63 6.54 56.52 0.37 -6.26 15 19 H 0.07 1.06 8.14 -51.93 -0.42 0.64 15 20 H 0.09 1.71 7.96 -51.93 -0.41 1.30 15 21 H 0.06 1.03 8.14 -51.93 -0.42 0.60 15 22 H 0.07 0.70 8.14 -51.93 -0.42 0.28 15 23 H 0.08 0.72 8.14 -51.93 -0.42 0.30 15 24 H 0.08 0.85 8.14 -51.93 -0.42 0.43 15 25 H 0.17 2.55 7.44 -52.49 -0.39 2.16 15 26 H 0.36 7.02 8.10 45.56 0.37 7.39 15 27 H 0.26 7.53 8.31 -40.82 -0.34 7.19 15 LS Contribution 238.02 15.07 3.59 3.59 Total: -1.00 -33.57 238.02 -3.58 -37.15 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -2.51 Total: 3.33 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -0.76 Total: -9.56 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: 0.92 Total: -39.33 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -0.38 Total: -13.67 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -4.45 Total: 18.49 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -33.57 -3.58 -37.15 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129063290.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.040 kcal (2) G-P(sol) polarization free energy of solvation -33.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds