Wall clock time and date at job start Mon Mar 30 2020 02:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30844 * 125.89476 * 2 1 4 4 N 1.40083 * 108.20198 * 180.02562 * 3 2 1 5 5 C 1.46504 * 126.03812 * 179.97438 * 4 3 2 6 6 C 1.34951 * 107.92726 * 359.97438 * 4 3 2 7 7 C 1.35320 * 107.74569 * 0.02562 * 6 4 3 8 8 C 1.50697 * 126.04023 * 180.02562 * 7 6 4 9 9 H 1.08996 * 109.47280 * 214.97431 * 8 7 6 10 10 O 1.42904 * 109.46949 * 334.97331 * 8 7 6 11 11 C 1.50699 * 109.47328 * 94.97111 * 8 7 6 12 12 H 1.08007 * 119.99768 * 359.97438 * 11 8 7 13 13 C 1.37870 * 120.00161 * 180.02562 * 11 8 7 14 14 N 1.31515 * 120.00218 * 180.02562 * 13 11 8 15 15 Si 1.86802 * 120.00069 * 359.97438 * 13 11 8 16 16 H 1.48507 * 109.46592 * 90.00414 * 15 13 11 17 17 H 1.48497 * 109.47247 * 209.99976 * 15 13 11 18 18 H 1.48490 * 109.47242 * 330.00529 * 15 13 11 19 19 H 1.09006 * 109.47315 * 89.97776 * 1 2 3 20 20 H 1.08994 * 109.47486 * 209.97447 * 1 2 3 21 21 H 1.09006 * 109.47537 * 329.97908 * 1 2 3 22 22 H 1.09005 * 109.46927 * 90.02517 * 5 4 3 23 23 H 1.08994 * 109.47314 * 210.02353 * 5 4 3 24 24 H 1.08998 * 109.46715 * 330.02835 * 5 4 3 25 25 H 1.07996 * 126.12664 * 179.97438 * 6 4 3 26 26 H 0.96699 * 113.99859 * 60.00298 * 10 8 7 27 27 H 0.96996 * 120.00803 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0600 0.0000 4 7 3.6087 0.6342 -0.0006 5 6 4.7899 1.5009 -0.0013 6 6 3.6142 -0.7153 -0.0004 7 6 2.3271 -1.1330 -0.0002 8 6 1.8599 -2.5657 0.0006 9 1 0.9468 -2.6505 -0.5885 10 8 2.8730 -3.3974 -0.5688 11 6 1.5870 -3.0043 1.4162 12 1 1.7373 -2.3147 2.2337 13 6 1.1465 -4.2863 1.6680 14 7 0.9078 -4.6689 2.9034 15 14 0.8873 -5.4794 0.2541 16 1 2.1449 -6.2274 0.0009 17 1 -0.1947 -6.4343 0.6043 18 1 0.5058 -4.7249 -0.9666 19 1 -0.3634 0.0004 -1.0277 20 1 -0.3634 -0.8901 0.5134 21 1 -0.3634 0.8898 0.5142 22 1 5.0836 1.7156 1.0262 23 1 5.6089 0.9985 -0.5158 24 1 4.5558 2.4335 -0.5148 25 1 4.4891 -1.3484 -0.0011 26 1 3.7153 -3.3717 -0.0947 27 1 0.5983 -5.5709 3.0806 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129063290.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:45 Heat of formation + Delta-G solvation = -1.068762 kcal Electronic energy + Delta-G solvation = -12388.583363 eV Core-core repulsion = 10147.240095 eV Total energy + Delta-G solvation = -2241.343268 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.08103 -37.83215 -34.76877 -34.38550 -31.49662 -30.46214 -28.86611 -26.25916 -23.99565 -21.32549 -20.51295 -19.39670 -17.82078 -16.85610 -16.31024 -15.91685 -15.51499 -14.93657 -14.60874 -14.29336 -13.85603 -13.72165 -13.23716 -13.13052 -12.86364 -12.85530 -12.67668 -11.92083 -11.70318 -11.21035 -10.82129 -10.52447 -10.03116 -9.04111 -8.30160 -6.44428 1.00827 1.46416 1.48553 1.63898 1.78812 1.91358 2.42971 3.02813 3.69553 4.02543 4.10022 4.31411 4.46668 4.51966 4.66013 4.68642 4.82428 4.88255 5.10735 5.21893 5.51550 5.59804 5.81383 6.18083 6.27804 6.68116 6.83217 7.18285 7.36579 8.84238 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.047787 B = 0.011510 C = 0.010796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.788412 B = 2432.004732 C = 2592.856629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.062 3.938 3 N -0.332 5.332 4 N -0.384 5.384 5 C 0.098 3.902 6 C 0.054 3.946 7 C -0.254 4.254 8 C 0.273 3.727 9 H 0.058 0.942 10 O -0.584 6.584 11 C -0.542 4.542 12 H 0.029 0.971 13 C 0.031 3.969 14 N -0.939 5.939 15 Si 0.974 3.026 16 H -0.272 1.272 17 H -0.303 1.303 18 H -0.260 1.260 19 H 0.089 0.911 20 H 0.069 0.931 21 H 0.078 0.922 22 H 0.080 0.920 23 H 0.115 0.885 24 H 0.093 0.907 25 H 0.199 0.801 26 H 0.374 0.626 27 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.407 8.223 -7.725 12.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.103 4.103 3 N -0.157 5.157 4 N -0.168 5.168 5 C -0.042 4.042 6 C -0.092 4.092 7 C -0.266 4.266 8 C 0.214 3.786 9 H 0.076 0.924 10 O -0.391 6.391 11 C -0.580 4.580 12 H 0.048 0.952 13 C -0.169 4.169 14 N -0.579 5.579 15 Si 0.801 3.199 16 H -0.198 1.198 17 H -0.231 1.231 18 H -0.185 1.185 19 H 0.108 0.892 20 H 0.088 0.912 21 H 0.097 0.903 22 H 0.098 0.902 23 H 0.133 0.867 24 H 0.111 0.889 25 H 0.216 0.784 26 H 0.222 0.778 27 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.082 9.358 -8.045 13.758 hybrid contribution 0.220 -1.353 0.501 1.459 sum 6.302 8.005 -7.544 12.677 Atomic orbital electron populations 1.20201 0.85941 1.03303 1.03456 1.22512 0.98019 0.90272 0.99519 1.77048 0.87813 1.23081 1.27783 1.48625 1.05603 1.05052 1.57471 1.22147 0.82916 0.94888 1.04251 1.22476 0.99425 0.85164 1.02090 1.20971 0.93449 0.97574 1.14565 1.17899 0.87220 0.82147 0.91306 0.92418 1.86325 1.25271 1.69240 1.58307 1.21662 1.45767 0.97725 0.92876 0.95217 1.25820 0.93067 1.00092 0.97919 1.70075 1.46507 1.19725 1.21592 0.85297 0.77252 0.77860 0.79504 1.19786 1.23091 1.18492 0.89202 0.91159 0.90326 0.90170 0.86706 0.88858 0.78385 0.77793 0.92325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.48 10.21 71.23 0.73 -1.76 15 2 C 0.06 2.54 7.22 43.10 0.31 2.85 15 3 N -0.33 -12.91 12.58 -47.39 -0.60 -13.51 15 4 N -0.38 -12.55 4.01 -369.56 -1.48 -14.04 15 5 C 0.10 1.91 11.47 127.77 1.47 3.38 15 6 C 0.05 1.90 10.78 83.54 0.90 2.80 15 7 C -0.25 -10.82 5.17 -20.14 -0.10 -10.93 15 8 C 0.27 12.93 2.42 29.10 0.07 13.00 15 9 H 0.06 2.84 7.15 -2.39 -0.02 2.82 15 10 O -0.58 -25.33 10.82 -148.98 -1.61 -26.94 15 11 C -0.54 -30.63 9.33 25.60 0.24 -30.39 15 12 H 0.03 1.89 7.98 -2.91 -0.02 1.87 15 13 C 0.03 1.76 5.47 84.65 0.46 2.23 15 14 N -0.94 -57.97 13.96 21.44 0.30 -57.67 15 15 Si 0.97 47.04 26.18 68.60 1.80 48.84 15 16 H -0.27 -12.80 7.11 99.48 0.71 -12.09 15 17 H -0.30 -14.41 7.11 99.48 0.71 -13.70 15 18 H -0.26 -12.23 6.54 99.48 0.65 -11.58 15 19 H 0.09 2.71 8.14 -2.38 -0.02 2.69 15 20 H 0.07 2.72 7.96 -2.39 -0.02 2.71 15 21 H 0.08 2.47 8.14 -2.38 -0.02 2.45 15 22 H 0.08 1.41 8.14 -2.38 -0.02 1.39 15 23 H 0.11 1.50 8.14 -2.39 -0.02 1.48 15 24 H 0.09 1.64 8.14 -2.39 -0.02 1.62 15 25 H 0.20 5.37 7.44 -2.91 -0.02 5.35 15 26 H 0.37 13.70 8.10 -74.06 -0.60 13.10 15 27 H 0.27 15.46 8.31 -92.71 -0.77 14.69 15 Total: -1.00 -72.36 238.02 2.99 -69.37 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.52 Total: 12.78 kcal Atomic # 6 Polarization: -22.90 SS G_CDS: 4.07 Total: -18.83 kcal Atomic # 7 Polarization: -83.44 SS G_CDS: -1.78 Total: -85.22 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -1.61 Total: -26.94 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 1.80 Total: 48.84 kcal Total: -72.36 2.99 -69.37 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129063290.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.301 kcal (2) G-P(sol) polarization free energy of solvation -72.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds