Wall clock time and date at job start Mon Mar 30 2020 02:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.47285 * 2 1 4 4 N 1.40076 * 126.03962 * 270.15782 * 3 2 1 5 5 C 1.30842 * 108.20635 * 180.23166 * 4 3 2 6 6 C 1.39874 * 108.19775 * 359.77854 * 5 4 3 7 7 C 1.34954 * 126.03377 * 90.00099 * 3 2 1 8 8 C 1.50696 * 126.12653 * 0.03961 * 7 3 2 9 9 H 1.09006 * 109.47511 * 24.71136 * 8 7 3 10 10 O 1.42905 * 109.47280 * 144.71323 * 8 7 3 11 11 C 1.50706 * 109.47259 * 264.71131 * 8 7 3 12 12 H 1.08005 * 119.99758 * 0.02562 * 11 8 7 13 13 C 1.37871 * 120.00102 * 180.02562 * 11 8 7 14 14 N 1.31516 * 120.00217 * 0.02562 * 13 11 8 15 15 Si 1.86800 * 119.99766 * 179.97438 * 13 11 8 16 16 H 1.48501 * 109.47483 * 269.99808 * 15 13 11 17 17 H 1.48499 * 109.47134 * 30.00322 * 15 13 11 18 18 H 1.48507 * 109.46904 * 150.00145 * 15 13 11 19 19 H 1.08994 * 109.47274 * 59.99497 * 1 2 3 20 20 H 1.08993 * 109.47037 * 180.02562 * 1 2 3 21 21 H 1.09007 * 109.46716 * 299.99894 * 1 2 3 22 22 H 1.09001 * 109.47037 * 240.00433 * 2 1 3 23 23 H 1.08993 * 109.47500 * 119.99999 * 2 1 3 24 24 H 1.07997 * 125.89980 * 179.74852 * 5 4 3 25 25 H 1.08005 * 126.03411 * 180.02562 * 6 5 4 26 26 H 0.96699 * 113.99284 * 59.99848 * 10 8 7 27 27 H 0.97001 * 119.99646 * 359.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 7 2.2902 2.1593 -1.1327 5 6 2.7112 3.3315 -0.7320 6 6 2.7161 3.3392 0.6667 7 6 2.2830 2.1297 1.0913 8 6 2.1299 1.6942 2.5258 9 1 2.2023 0.6082 2.5856 10 8 3.1641 2.2846 3.3159 11 6 0.7863 2.1374 3.0448 12 1 0.1106 2.6799 2.4001 13 6 0.4196 1.8504 4.3425 14 7 1.2426 1.1903 5.1277 15 14 -1.2456 2.4005 4.9859 16 1 -1.1230 3.7547 5.5830 17 1 -2.2205 2.4396 3.8664 18 1 -1.7172 1.4445 6.0198 19 1 -0.3633 0.5139 -0.8899 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8901 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8899 24 1 3.0046 4.1513 -1.3709 25 1 3.0128 4.1650 1.2965 26 1 3.1604 3.2516 3.3093 27 1 2.1074 0.9050 4.7937 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160255204.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:16 Heat of formation + Delta-G solvation = 12.045738 kcal Electronic energy + Delta-G solvation = -12576.498233 eV Core-core repulsion = 10335.723653 eV Total energy + Delta-G solvation = -2240.774580 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.55277 -36.03210 -33.95735 -32.27955 -30.03456 -28.71335 -26.26783 -23.34207 -22.90961 -20.31806 -19.08239 -17.42344 -16.75690 -14.74040 -14.48259 -14.40659 -13.86245 -13.35614 -13.26611 -12.80853 -12.29290 -12.12000 -11.88061 -11.57324 -10.89409 -10.82236 -10.35739 -10.24814 -10.18689 -9.65450 -8.82120 -8.58283 -8.29709 -7.73815 -6.49233 -4.35431 2.61036 3.13549 3.36340 3.38318 3.52749 3.55304 4.41581 5.01086 5.20043 5.42560 5.51269 5.57564 5.58311 5.83874 5.95923 6.06004 6.25793 6.47477 6.57120 6.58609 7.23672 7.31733 7.65257 7.80716 8.22080 8.38684 8.70023 8.88274 9.48705 10.89378 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.037401 B = 0.013076 C = 0.011643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.463514 B = 2140.783238 C = 2404.294097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.135 3.865 3 N -0.368 5.368 4 N -0.325 5.325 5 C 0.040 3.960 6 C -0.294 4.294 7 C 0.111 3.889 8 C 0.269 3.731 9 H 0.060 0.940 10 O -0.571 6.571 11 C -0.638 4.638 12 H 0.054 0.946 13 C 0.038 3.962 14 N -0.887 5.887 15 Si 1.071 2.929 16 H -0.285 1.285 17 H -0.288 1.288 18 H -0.282 1.282 19 H 0.056 0.944 20 H 0.069 0.931 21 H 0.079 0.921 22 H 0.083 0.917 23 H 0.090 0.910 24 H 0.173 0.827 25 H 0.138 0.862 26 H 0.361 0.639 27 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.275 0.248 -6.965 6.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.013 3.987 3 N -0.152 5.152 4 N -0.147 5.147 5 C -0.145 4.145 6 C -0.323 4.323 7 C -0.017 4.017 8 C 0.210 3.790 9 H 0.077 0.923 10 O -0.375 6.375 11 C -0.676 4.676 12 H 0.072 0.928 13 C -0.171 4.171 14 N -0.521 5.521 15 Si 0.898 3.102 16 H -0.212 1.212 17 H -0.214 1.214 18 H -0.208 1.208 19 H 0.075 0.925 20 H 0.087 0.913 21 H 0.098 0.902 22 H 0.101 0.899 23 H 0.108 0.892 24 H 0.190 0.810 25 H 0.155 0.845 26 H 0.208 0.792 27 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.386 -1.301 -6.530 6.801 hybrid contribution 0.970 1.224 -0.916 1.810 sum -0.415 -0.077 -7.446 7.458 Atomic orbital electron populations 1.22187 0.94395 1.02461 1.03842 1.21515 0.95509 0.78426 1.03256 1.48511 1.51632 1.11725 1.03336 1.77128 1.23931 1.04644 1.08973 1.23621 1.00052 0.95718 0.95128 1.20998 1.17785 0.99103 0.94398 1.22686 0.94485 0.91916 0.92636 1.18244 0.88053 0.93933 0.78799 0.92278 1.86508 1.55556 1.23814 1.71574 1.22252 1.01320 1.43237 1.00757 0.92803 1.25838 1.04280 0.93818 0.93181 1.70633 1.10371 1.32612 1.38473 0.83533 0.74289 0.76629 0.75732 1.21152 1.21437 1.20798 0.92487 0.91251 0.90194 0.89855 0.89209 0.80988 0.84466 0.79245 0.90404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.78 10.24 37.16 0.38 -2.40 15 2 C 0.13 2.32 6.96 -4.04 -0.03 2.29 15 3 N -0.37 -7.66 3.61 -57.14 -0.21 -7.86 15 4 N -0.33 -6.65 12.58 30.63 0.39 -6.26 15 5 C 0.04 0.75 12.03 -17.36 -0.21 0.55 15 6 C -0.29 -6.04 10.17 -40.01 -0.41 -6.45 15 7 C 0.11 2.50 5.93 -82.27 -0.49 2.01 15 8 C 0.27 6.63 2.70 -29.03 -0.08 6.55 15 9 H 0.06 1.53 6.81 -51.93 -0.35 1.17 15 10 O -0.57 -14.05 11.89 -35.23 -0.42 -14.47 15 11 C -0.64 -17.00 8.75 -34.44 -0.30 -17.30 15 12 H 0.05 1.48 7.74 -52.48 -0.41 1.07 15 13 C 0.04 1.04 5.40 -17.82 -0.10 0.95 15 14 N -0.89 -25.75 13.53 55.43 0.75 -25.00 15 15 Si 1.07 24.17 29.90 -169.99 -5.08 19.08 15 16 H -0.29 -6.25 7.11 56.52 0.40 -5.85 15 17 H -0.29 -6.26 7.11 56.52 0.40 -5.86 15 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 19 H 0.06 0.92 8.14 -51.93 -0.42 0.50 15 20 H 0.07 0.91 8.14 -51.93 -0.42 0.49 15 21 H 0.08 1.54 8.14 -51.93 -0.42 1.12 15 22 H 0.08 1.24 8.14 -51.93 -0.42 0.81 15 23 H 0.09 1.52 6.97 -51.93 -0.36 1.16 15 24 H 0.17 2.48 8.06 -52.49 -0.42 2.06 15 25 H 0.14 2.57 7.58 -52.48 -0.40 2.17 15 26 H 0.36 7.95 8.19 45.56 0.37 8.32 15 27 H 0.28 8.38 6.47 -40.82 -0.26 8.12 15 LS Contribution 239.38 15.07 3.61 3.61 Total: -1.00 -30.85 239.38 -4.51 -35.37 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -2.32 Total: 9.35 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -1.23 Total: -13.81 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.93 Total: -39.13 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -0.42 Total: -14.47 kcal Atomic # 14 Polarization: 24.17 SS G_CDS: -5.08 Total: 19.08 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -30.85 -4.51 -35.37 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160255204.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.411 kcal (2) G-P(sol) polarization free energy of solvation -30.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds