Wall clock time and date at job start Mon Mar 30 2020 02:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86799 * 120.00128 * 2 1 4 4 H 1.48499 * 109.47536 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47310 * 299.99963 * 3 2 1 6 6 H 1.48505 * 109.47383 * 59.99884 * 3 2 1 7 7 C 1.38809 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00465 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99963 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00202 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47011 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.46909 * 179.97438 * 11 10 9 13 13 N 1.46498 * 109.47171 * 179.97438 * 12 11 10 14 14 C 1.35308 * 125.86965 * 124.99697 * 13 12 11 15 15 C 1.35347 * 106.17713 * 179.97438 * 14 13 12 16 16 N 1.33774 * 106.49812 * 0.02562 * 15 14 13 17 17 N 1.28637 * 108.88333 * 0.02562 * 16 15 14 18 18 H 0.97009 * 119.99944 * 0.02562 * 1 2 3 19 19 H 0.97004 * 119.99799 * 0.02562 * 9 7 2 20 20 H 1.08995 * 109.47380 * 60.00158 * 10 9 7 21 21 H 1.08997 * 109.46743 * 299.99574 * 10 9 7 22 22 H 1.08995 * 109.47091 * 59.99770 * 11 10 9 23 23 H 1.08996 * 109.46859 * 299.99855 * 11 10 9 24 24 H 1.09002 * 109.46649 * 59.99895 * 12 11 10 25 25 H 1.09000 * 109.47178 * 300.00172 * 12 11 10 26 26 H 1.07997 * 126.91159 * 359.97438 * 14 13 12 27 27 H 1.08002 * 126.75518 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0637 -4.8197 -0.0012 12 6 1.8287 -6.1448 -0.0018 13 7 0.8767 -7.2583 -0.0018 14 6 0.8392 -8.2693 -0.9003 15 6 -0.1872 -9.0683 -0.5263 16 7 -0.7208 -8.5140 0.5681 17 7 -0.0684 -7.4425 0.8524 18 1 -0.4850 0.8401 -0.0004 19 1 0.3555 -2.3880 -0.0005 20 1 2.6846 -3.7146 0.8894 21 1 2.6845 -3.7145 -0.8906 22 1 0.4374 -4.7617 -0.8913 23 1 0.4367 -4.7621 0.8886 24 1 2.4553 -6.2029 0.8882 25 1 2.4554 -6.2020 -0.8918 26 1 1.4961 -8.4103 -1.7458 27 1 -0.5122 -9.9746 -1.0155 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163845263.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:25 Heat of formation + Delta-G solvation = 79.867138 kcal Electronic energy + Delta-G solvation = -11641.429236 eV Core-core repulsion = 9435.888363 eV Total energy + Delta-G solvation = -2205.540873 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.102 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -44.12584 -37.65127 -35.85703 -33.69702 -31.92123 -31.36731 -27.49929 -25.13913 -23.63406 -22.90090 -22.02557 -19.19844 -18.43775 -17.30959 -16.62745 -16.26895 -15.71567 -15.43796 -15.20313 -14.76525 -13.89143 -13.58140 -12.90529 -12.87555 -12.62232 -12.45833 -12.14678 -12.03734 -11.84006 -11.77373 -11.03571 -10.97359 -10.28987 -9.04694 -7.97769 -5.28205 0.73471 1.47040 1.48537 1.53087 1.58766 1.68302 2.54685 3.36742 3.49386 3.68539 3.83739 4.10801 4.28341 4.34828 4.38681 4.41247 4.50955 4.74759 4.91585 5.21128 5.24329 5.35023 5.47991 5.72697 6.24176 7.29792 7.58554 8.05076 8.26106 9.26374 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.104006 B = 0.005736 C = 0.005564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 269.150740 B = 4880.170154 C = 5031.460585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.080 4.080 3 Si 0.978 3.022 4 H -0.261 1.261 5 H -0.293 1.293 6 H -0.295 1.295 7 C -0.246 4.246 8 H 0.084 0.916 9 N -0.753 5.753 10 C 0.156 3.844 11 C -0.125 4.125 12 C 0.122 3.878 13 N -0.288 5.288 14 C -0.034 4.034 15 C -0.069 4.069 16 N -0.319 5.319 17 N -0.135 5.135 18 H 0.251 0.749 19 H 0.371 0.629 20 H 0.032 0.968 21 H 0.042 0.958 22 H 0.059 0.941 23 H 0.054 0.946 24 H 0.114 0.886 25 H 0.150 0.850 26 H 0.239 0.761 27 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.709 -16.183 -4.400 18.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.272 4.272 3 Si 0.806 3.194 4 H -0.185 1.185 5 H -0.220 1.220 6 H -0.222 1.222 7 C -0.377 4.377 8 H 0.101 0.899 9 N -0.396 5.396 10 C 0.029 3.971 11 C -0.163 4.163 12 C 0.002 3.998 13 N -0.082 5.082 14 C -0.185 4.185 15 C -0.227 4.227 16 N -0.184 5.184 17 N -0.114 5.114 18 H 0.060 0.940 19 H 0.202 0.798 20 H 0.050 0.950 21 H 0.060 0.940 22 H 0.078 0.922 23 H 0.073 0.927 24 H 0.132 0.868 25 H 0.168 0.832 26 H 0.255 0.745 27 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 6.206 -15.527 -3.108 17.007 hybrid contribution 0.149 0.773 -0.795 1.118 sum 6.356 -14.754 -3.903 16.532 Atomic orbital electron populations 1.69845 1.06884 1.26117 1.59535 1.25672 0.96422 1.01519 1.03632 0.85012 0.78394 0.79395 0.76571 1.18484 1.22037 1.22238 1.19733 0.91771 0.85097 1.41140 0.89853 1.42641 1.05710 1.01585 1.89652 1.20716 0.93478 0.83757 0.99136 1.21785 0.98886 0.93318 1.02357 1.22301 0.88638 0.80730 1.08115 1.47831 1.22410 1.19672 1.18281 1.24529 1.04173 0.90128 0.99701 1.24313 0.97398 1.04517 0.96521 1.75055 1.23431 1.03628 1.16271 1.78319 1.01093 1.15005 1.16982 0.94006 0.79773 0.94976 0.94042 0.92231 0.92668 0.86793 0.83245 0.74510 0.76344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.48 13.06 21.65 0.28 -60.20 15 2 C -0.08 -4.64 5.50 84.86 0.47 -4.17 15 3 Si 0.98 45.83 29.55 68.60 2.03 47.86 15 4 H -0.26 -11.26 7.11 99.48 0.71 -10.55 15 5 H -0.29 -13.73 7.11 99.48 0.71 -13.02 15 6 H -0.30 -13.93 7.11 99.48 0.71 -13.22 15 7 C -0.25 -13.57 9.99 84.03 0.84 -12.73 15 8 H 0.08 4.31 7.83 -2.91 -0.02 4.29 15 9 N -0.75 -38.08 5.60 -343.46 -1.92 -40.01 15 10 C 0.16 5.62 6.26 86.38 0.54 6.16 15 11 C -0.12 -3.74 5.45 30.60 0.17 -3.57 15 12 C 0.12 2.41 6.46 86.38 0.56 2.97 15 13 N -0.29 -6.91 3.44 -347.74 -1.20 -8.11 15 14 C -0.03 -0.57 11.57 83.49 0.97 0.39 15 15 C -0.07 -1.45 12.05 83.73 1.01 -0.44 15 16 N -0.32 -9.99 12.41 -58.26 -0.72 -10.71 15 17 N -0.13 -4.40 12.91 37.02 0.48 -3.92 15 18 H 0.25 15.08 8.31 -92.70 -0.77 14.31 15 19 H 0.37 20.47 7.67 -92.71 -0.71 19.76 15 20 H 0.03 1.12 8.14 -2.39 -0.02 1.10 15 21 H 0.04 1.36 8.14 -2.39 -0.02 1.34 15 22 H 0.06 1.91 8.14 -2.39 -0.02 1.89 15 23 H 0.05 1.95 8.12 -2.39 -0.02 1.93 15 24 H 0.11 2.00 8.14 -2.39 -0.02 1.98 15 25 H 0.15 1.70 8.07 -2.39 -0.02 1.68 15 26 H 0.24 1.40 8.06 -2.91 -0.02 1.38 15 27 H 0.22 2.69 8.06 -2.91 -0.02 2.67 15 Total: -1.00 -74.88 244.26 3.94 -70.94 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 0.45 Total: 15.54 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: 4.55 Total: -11.39 kcal Atomic # 7 Polarization: -119.86 SS G_CDS: -3.08 Total: -122.94 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -74.88 3.94 -70.94 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163845263.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.805 kcal (2) G-P(sol) polarization free energy of solvation -74.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds