Wall clock time and date at job start Mon Mar 30 2020 01:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42904 * 113.99882 * 2 1 4 4 H 1.09004 * 109.12145 * 29.17767 * 3 2 1 5 5 C 1.50030 * 109.13351 * 270.00209 * 3 2 1 6 6 C 1.35886 * 122.73382 * 217.22520 * 5 3 2 7 7 C 1.41365 * 119.95586 * 180.63141 * 6 5 3 8 8 H 1.08006 * 120.00023 * 153.55348 * 7 6 5 9 9 C 1.40017 * 120.00338 * 333.28213 * 7 6 5 10 10 N 1.30791 * 119.99722 * 342.22542 * 9 7 6 11 11 Si 1.86800 * 119.99924 * 162.22071 * 9 7 6 12 12 H 1.48499 * 109.46956 * 90.00662 * 11 9 7 13 13 H 1.48502 * 109.46973 * 209.99996 * 11 9 7 14 14 H 1.48495 * 109.47421 * 329.99862 * 11 9 7 15 15 C 1.47992 * 120.08327 * 0.90600 * 6 5 3 16 16 O 1.21220 * 121.20702 * 168.14948 * 15 6 5 17 17 C 1.51595 * 117.51453 * 347.92983 * 15 6 5 18 18 C 1.52744 * 109.13163 * 148.29396 * 3 2 1 19 19 H 1.08996 * 109.46737 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.47008 * 300.00111 * 1 2 3 21 21 H 1.08998 * 109.47376 * 59.99667 * 1 2 3 22 22 H 1.08001 * 118.63004 * 37.25101 * 5 3 2 23 23 H 0.96999 * 119.99803 * 179.97438 * 10 9 7 24 24 H 1.09009 * 110.07883 * 283.19674 * 17 15 6 25 25 H 1.09000 * 109.85033 * 162.09494 * 17 15 6 26 26 H 1.09000 * 109.50762 * 293.99125 * 18 3 2 27 27 H 1.08998 * 109.50883 * 54.08608 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3340 1.9974 0.5021 5 6 2.2102 1.7548 -1.4174 6 6 3.2896 2.4791 -1.8133 7 6 3.4123 2.8831 -3.1624 8 1 3.9805 3.7671 -3.4119 9 6 2.8020 2.1342 -4.1759 10 7 2.4238 0.9041 -3.9425 11 14 2.5278 2.8919 -5.8611 12 1 3.7099 2.6285 -6.7205 13 1 1.3202 2.2918 -6.4831 14 1 2.3353 4.3575 -5.7196 15 6 4.3398 2.8404 -0.8352 16 8 5.4041 3.2952 -1.1956 17 6 4.0328 2.6250 0.6336 18 6 3.3354 1.2635 0.7584 19 1 -0.3632 -1.0276 -0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 1.4650 1.4919 -2.1536 23 1 2.0006 0.3853 -4.6444 24 1 3.3739 3.4135 0.9978 25 1 4.9587 2.6212 1.2087 26 1 3.1464 1.0462 1.8097 27 1 3.9727 0.4871 0.3351 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000202235450.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:48 Heat of formation + Delta-G solvation = -79.904505 kcal Electronic energy + Delta-G solvation = -12469.542116 eV Core-core repulsion = 10192.487523 eV Total energy + Delta-G solvation = -2277.054593 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.089 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.69794 -37.14143 -34.47635 -33.35272 -29.86325 -27.60160 -25.61201 -24.75796 -21.57291 -20.49311 -17.99735 -16.34050 -15.59215 -15.25933 -14.76914 -14.49160 -14.21192 -13.39843 -13.08662 -12.48285 -12.25782 -11.79091 -11.45371 -11.20858 -11.13161 -10.83941 -10.65370 -10.42017 -10.23816 -9.93911 -9.16838 -8.72150 -8.28555 -7.52756 -6.55306 -4.22673 2.52960 3.10334 3.16398 3.22363 4.05747 4.09196 4.66240 5.17364 5.37216 5.55719 5.71323 5.81507 5.88495 5.98179 6.15418 6.16922 6.22210 6.30304 6.70181 6.82396 6.96558 7.34774 7.88984 8.08159 8.18557 8.43489 8.89785 9.04163 9.08737 10.40025 Molecular weight = 196.09amu Principal moments of inertia in cm(-1) A = 0.031114 B = 0.014916 C = 0.010585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.697611 B = 1876.699983 C = 2644.501089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.388 6.388 3 C 0.145 3.855 4 H 0.040 0.960 5 C -0.290 4.290 6 C -0.017 4.017 7 C -0.442 4.442 8 H 0.073 0.927 9 C 0.070 3.930 10 N -0.792 5.792 11 Si 0.903 3.097 12 H -0.272 1.272 13 H -0.278 1.278 14 H -0.263 1.263 15 C 0.385 3.615 16 O -0.481 6.481 17 C -0.163 4.163 18 C -0.105 4.105 19 H 0.072 0.928 20 H 0.028 0.972 21 H 0.040 0.960 22 H 0.119 0.881 23 H 0.276 0.724 24 H 0.090 0.910 25 H 0.078 0.922 26 H 0.061 0.939 27 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.056 0.009 5.626 6.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.307 6.307 3 C 0.089 3.911 4 H 0.058 0.942 5 C -0.314 4.314 6 C -0.020 4.020 7 C -0.473 4.473 8 H 0.091 0.909 9 C -0.145 4.145 10 N -0.419 5.419 11 Si 0.728 3.272 12 H -0.197 1.197 13 H -0.203 1.203 14 H -0.187 1.187 15 C 0.266 3.734 16 O -0.359 6.359 17 C -0.201 4.201 18 C -0.143 4.143 19 H 0.091 0.909 20 H 0.047 0.953 21 H 0.058 0.942 22 H 0.137 0.863 23 H 0.087 0.913 24 H 0.109 0.891 25 H 0.097 0.903 26 H 0.080 0.920 27 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.472 -0.120 5.328 6.360 hybrid contribution -0.455 0.301 -0.840 1.001 sum -3.927 0.181 4.488 5.966 Atomic orbital electron populations 1.22572 0.82708 1.01257 0.99236 1.87900 1.18295 1.29358 1.95144 1.20588 0.92325 0.82775 0.95412 0.94232 1.23150 1.00812 1.13063 0.94346 1.18828 0.91309 0.98757 0.93066 1.19269 1.28138 1.09601 0.90263 0.90870 1.25758 0.94293 0.93968 1.00518 1.69832 1.30413 1.07023 1.34646 0.86403 0.78386 0.80533 0.81900 1.19731 1.20336 1.18677 1.23774 0.87118 0.71835 0.90715 1.90351 1.26548 1.35356 1.83601 1.22303 1.01653 0.98668 0.97462 1.21557 0.96712 0.96462 0.99541 0.90938 0.95344 0.94150 0.86304 0.91349 0.89135 0.90325 0.92049 0.91058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.65 10.79 101.05 1.09 1.74 15 2 O -0.39 -8.11 10.30 -35.23 -0.36 -8.48 15 3 C 0.15 3.03 2.79 -28.34 -0.08 2.96 15 4 H 0.04 0.75 7.75 -51.93 -0.40 0.35 15 5 C -0.29 -7.30 8.35 -35.48 -0.30 -7.60 15 6 C -0.02 -0.45 5.60 -105.55 -0.59 -1.04 15 7 C -0.44 -12.42 8.76 -37.73 -0.33 -12.75 15 8 H 0.07 2.06 7.90 -52.48 -0.41 1.65 15 9 C 0.07 1.87 5.07 -17.33 -0.09 1.78 15 10 N -0.79 -21.56 11.07 55.55 0.61 -20.94 15 11 Si 0.90 19.84 29.60 -169.99 -5.03 14.81 15 12 H -0.27 -5.94 7.11 56.52 0.40 -5.54 15 13 H -0.28 -5.91 7.11 56.52 0.40 -5.50 15 14 H -0.26 -5.71 7.11 56.52 0.40 -5.31 15 15 C 0.39 9.36 6.91 -29.87 -0.21 9.15 15 16 O -0.48 -12.80 17.51 5.61 0.10 -12.71 15 17 C -0.16 -3.04 6.21 -27.19 -0.17 -3.21 15 18 C -0.10 -1.97 5.56 -26.61 -0.15 -2.12 15 19 H 0.07 1.04 8.14 -51.93 -0.42 0.61 15 20 H 0.03 0.40 8.08 -51.93 -0.42 -0.02 15 21 H 0.04 0.70 8.14 -51.93 -0.42 0.27 15 22 H 0.12 3.26 6.04 -52.49 -0.32 2.94 15 23 H 0.28 6.88 8.30 -40.82 -0.34 6.54 15 24 H 0.09 1.49 8.14 -51.92 -0.42 1.06 15 25 H 0.08 1.31 8.14 -51.93 -0.42 0.89 15 26 H 0.06 0.96 8.14 -51.93 -0.42 0.54 15 27 H 0.07 1.45 8.14 -51.93 -0.42 1.03 15 LS Contribution 236.75 15.07 3.57 3.57 Total: -1.00 -30.16 236.75 -5.15 -35.32 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: -3.22 Total: -0.48 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: -0.82 Total: -11.09 kcal Atomic # 7 Polarization: -21.56 SS G_CDS: 0.61 Total: -20.94 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.26 Total: -21.18 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.03 Total: 14.81 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -30.16 -5.15 -35.32 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000202235450.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.585 kcal (2) G-P(sol) polarization free energy of solvation -30.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds