Wall clock time and date at job start Mon Mar 30 2020 02:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35274 * 116.99802 * 2 1 4 4 C 1.40256 * 126.52062 * 90.48873 * 3 2 1 5 5 C 1.41280 * 126.62136 * 0.02562 * 4 3 2 6 6 H 1.08002 * 120.00584 * 220.97908 * 5 4 3 7 7 C 1.39608 * 119.99828 * 40.98048 * 5 4 3 8 8 N 1.31149 * 120.00205 * 187.89820 * 7 5 4 9 9 Si 1.86794 * 119.99694 * 7.89405 * 7 5 4 10 10 H 1.48501 * 109.47298 * 264.19290 * 9 7 5 11 11 H 1.48501 * 109.47452 * 24.19558 * 9 7 5 12 12 H 1.48506 * 109.47218 * 144.19416 * 9 7 5 13 13 C 1.41844 * 106.75803 * 180.28110 * 4 3 2 14 14 C 1.50698 * 125.90438 * 179.73697 * 13 4 3 15 15 N 1.30265 * 108.18980 * 359.55369 * 13 4 3 16 16 N 1.34924 * 126.52002 * 270.51426 * 3 2 1 17 17 C 1.46500 * 125.69024 * 359.97438 * 16 3 2 18 18 H 1.08995 * 109.47088 * 64.95070 * 1 2 3 19 19 H 1.09000 * 109.46798 * 184.94813 * 1 2 3 20 20 H 1.08999 * 109.46966 * 304.94763 * 1 2 3 21 21 H 0.96992 * 120.00444 * 180.02562 * 8 7 5 22 22 H 1.09002 * 109.46874 * 94.89318 * 14 13 4 23 23 H 1.09000 * 109.47488 * 214.88956 * 14 13 4 24 24 H 1.08996 * 109.47663 * 334.89208 * 14 13 4 25 25 H 1.08996 * 109.47194 * 94.88354 * 17 16 3 26 26 H 1.09001 * 109.47562 * 214.89471 * 17 16 3 27 27 H 1.09006 * 109.46512 * 334.88807 * 17 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0432 1.2053 0.0000 4 6 2.4306 1.9447 1.1271 5 6 2.2554 1.5741 2.4791 6 1 1.9499 2.3121 3.2062 7 6 2.4770 0.2540 2.8755 8 7 2.1672 -0.1264 4.0917 9 14 3.2148 -0.9706 1.6733 10 1 2.1259 -1.7409 1.0205 11 1 3.9939 -0.2421 0.6401 12 1 4.1112 -1.9026 2.4035 13 6 3.0270 3.1390 0.6476 14 6 3.5913 4.2481 1.4976 15 7 3.0063 3.1095 -0.6546 16 7 2.3990 1.9252 -1.0843 17 6 2.1851 1.5318 -2.4792 18 1 -0.3633 0.4351 -0.9310 19 1 -0.3633 -1.0239 0.0886 20 1 -0.3633 0.5887 0.8424 21 1 2.3216 -1.0435 4.3672 22 1 4.6639 4.1001 1.6228 23 1 3.4112 5.2066 1.0107 24 1 3.1069 4.2400 2.4740 25 1 1.2572 1.9730 -2.8429 26 1 3.0180 1.8838 -3.0878 27 1 2.1210 0.4456 -2.5445 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213870734.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:03 Heat of formation + Delta-G solvation = 13.936322 kcal Electronic energy + Delta-G solvation = -12833.067216 eV Core-core repulsion = 10592.374618 eV Total energy + Delta-G solvation = -2240.692598 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.79026 -38.78082 -35.47995 -34.22302 -31.26324 -30.18422 -28.39967 -26.88408 -25.09748 -21.86457 -20.53012 -19.39619 -18.02662 -17.27329 -16.79203 -16.16818 -15.70209 -15.13891 -14.61511 -14.18467 -14.03895 -13.68687 -13.29929 -13.18849 -12.94464 -12.79876 -12.44750 -12.07539 -11.91302 -11.44308 -11.23855 -10.49799 -9.70428 -9.09216 -8.52453 -6.20161 0.84549 1.31180 1.45543 1.53347 1.79356 1.98037 2.36282 3.06849 3.24711 3.87758 4.33451 4.38611 4.43530 4.51343 4.57035 4.62534 4.72592 4.95455 5.04135 5.12910 5.35593 5.49632 5.61060 5.99123 6.30830 6.70666 6.93395 7.09308 7.15982 8.55764 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.030738 B = 0.020861 C = 0.015056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.719773 B = 1341.925520 C = 1859.328144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.308 6.308 3 C 0.106 3.894 4 C -0.074 4.074 5 C -0.453 4.453 6 H 0.057 0.943 7 C 0.049 3.951 8 N -0.895 5.895 9 Si 0.974 3.026 10 H -0.246 1.246 11 H -0.284 1.284 12 H -0.305 1.305 13 C 0.021 3.979 14 C -0.050 4.050 15 N -0.303 5.303 16 N -0.392 5.392 17 C 0.102 3.898 18 H 0.062 0.938 19 H 0.110 0.890 20 H 0.035 0.965 21 H 0.279 0.721 22 H 0.077 0.923 23 H 0.081 0.919 24 H 0.069 0.931 25 H 0.082 0.918 26 H 0.093 0.907 27 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.363 0.800 -10.153 10.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.219 6.219 3 C -0.058 4.058 4 C -0.085 4.085 5 C -0.488 4.488 6 H 0.075 0.925 7 C -0.158 4.158 8 N -0.528 5.528 9 Si 0.805 3.195 10 H -0.172 1.172 11 H -0.211 1.211 12 H -0.234 1.234 13 C -0.144 4.144 14 C -0.109 4.109 15 N -0.131 5.131 16 N -0.188 5.188 17 C -0.038 4.038 18 H 0.080 0.920 19 H 0.128 0.872 20 H 0.054 0.946 21 H 0.088 0.912 22 H 0.095 0.905 23 H 0.100 0.900 24 H 0.088 0.912 25 H 0.101 0.899 26 H 0.112 0.888 27 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.094 0.941 -11.108 11.202 hybrid contribution -0.239 -1.014 0.558 1.182 sum -1.333 -0.073 -10.550 10.635 Atomic orbital electron populations 1.23172 0.79069 1.03945 1.00935 1.86090 1.21360 1.21888 1.92561 1.19446 1.07602 0.91167 0.87610 1.18154 1.03066 0.94421 0.92874 1.18260 1.43749 0.95087 0.91672 0.92474 1.26295 0.93586 0.99588 0.96358 1.69823 1.43535 1.19437 1.19967 0.85110 0.78515 0.78264 0.77655 1.17163 1.21056 1.23414 1.22916 1.00849 0.99223 0.91405 1.20004 1.00450 0.93285 0.97174 1.76439 1.21382 1.01814 1.13426 1.48347 1.49825 1.14267 1.06364 1.21899 1.03510 1.01501 0.76921 0.91952 0.87196 0.94576 0.91174 0.90467 0.89981 0.91205 0.89932 0.88814 0.89337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.84 11.13 113.37 1.26 2.10 15 2 O -0.31 -13.82 5.65 -85.58 -0.48 -14.30 15 3 C 0.11 5.09 5.17 84.71 0.44 5.53 15 4 C -0.07 -3.90 4.98 -21.15 -0.11 -4.00 15 5 C -0.45 -26.28 9.50 23.35 0.22 -26.06 15 6 H 0.06 3.52 7.94 -2.91 -0.02 3.50 15 7 C 0.05 2.81 5.50 85.13 0.47 3.28 15 8 N -0.89 -52.92 13.94 21.78 0.30 -52.61 15 9 Si 0.97 49.13 24.04 68.60 1.65 50.78 15 10 H -0.25 -11.61 6.26 99.48 0.62 -10.99 15 11 H -0.28 -15.14 6.49 99.48 0.65 -14.49 15 12 H -0.30 -14.93 7.11 99.48 0.71 -14.23 15 13 C 0.02 1.01 7.27 43.68 0.32 1.33 15 14 C -0.05 -1.90 10.30 71.24 0.73 -1.17 15 15 N -0.30 -13.62 12.45 -46.41 -0.58 -14.20 15 16 N -0.39 -16.76 3.99 -478.40 -1.91 -18.67 15 17 C 0.10 3.01 11.42 127.77 1.46 4.46 15 18 H 0.06 1.84 8.14 -2.39 -0.02 1.82 15 19 H 0.11 3.28 8.14 -2.39 -0.02 3.26 15 20 H 0.04 1.42 8.14 -2.39 -0.02 1.40 15 21 H 0.28 15.25 8.30 -92.71 -0.77 14.48 15 22 H 0.08 2.67 8.14 -2.39 -0.02 2.65 15 23 H 0.08 2.59 8.14 -2.39 -0.02 2.57 15 24 H 0.07 2.69 7.77 -2.39 -0.02 2.67 15 25 H 0.08 2.02 8.14 -2.39 -0.02 2.00 15 26 H 0.09 2.39 8.14 -2.39 -0.02 2.38 15 27 H 0.09 2.39 8.02 -2.38 -0.02 2.37 15 Total: -1.00 -68.92 234.22 4.78 -64.14 By element: Atomic # 1 Polarization: -1.60 SS G_CDS: 1.01 Total: -0.60 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: 4.79 Total: -14.54 kcal Atomic # 7 Polarization: -83.30 SS G_CDS: -2.19 Total: -85.48 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -0.48 Total: -14.30 kcal Atomic # 14 Polarization: 49.13 SS G_CDS: 1.65 Total: 50.78 kcal Total: -68.92 4.78 -64.14 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213870734.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.076 kcal (2) G-P(sol) polarization free energy of solvation -68.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds