Wall clock time and date at job start Mon Mar 30 2020 01:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99990 * 2 1 4 4 H 1.48497 * 109.47524 * 270.00369 * 3 2 1 5 5 H 1.48501 * 109.46914 * 30.00772 * 3 2 1 6 6 H 1.48505 * 109.46834 * 150.00082 * 3 2 1 7 7 C 1.37883 * 120.00138 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99772 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99828 * 179.97438 * 7 2 1 10 10 H 1.08999 * 109.64706 * 59.57902 * 9 7 2 11 11 C 1.53023 * 109.64472 * 298.93947 * 9 7 2 12 12 C 1.50072 * 110.15017 * 289.75857 * 11 9 7 13 13 C 1.29439 * 124.07282 * 342.86277 * 12 11 9 14 14 C 1.50075 * 124.07516 * 0.47139 * 13 12 11 15 15 C 1.53018 * 110.14678 * 342.86839 * 14 13 12 16 16 H 1.09002 * 109.64292 * 289.75165 * 15 14 13 17 17 C 1.50701 * 109.81812 * 169.22233 * 15 14 13 18 18 O 1.20822 * 120.00476 * 240.53316 * 17 15 14 19 19 O 1.34237 * 119.99803 * 60.52612 * 17 15 14 20 20 H 0.96998 * 120.00163 * 359.97438 * 1 2 3 21 21 H 1.09006 * 109.35427 * 49.96140 * 11 9 7 22 22 H 1.08996 * 109.36396 * 169.54930 * 11 9 7 23 23 H 1.07995 * 117.96301 * 162.89185 * 12 11 9 24 24 H 1.08004 * 117.96591 * 180.49387 * 13 12 11 25 25 H 1.09002 * 109.35333 * 222.65940 * 14 13 12 26 26 H 1.09002 * 109.35492 * 103.07994 * 14 13 12 27 27 H 0.96700 * 116.99651 * 180.02562 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 1 3.8783 -0.6744 0.8841 11 6 4.0254 -0.4963 -1.2624 12 6 3.7502 -1.3434 -2.4702 13 6 3.4618 -2.6043 -2.4213 14 6 3.3524 -3.3931 -1.1493 15 6 4.0272 -2.6387 -0.0017 16 1 5.1076 -2.6420 -0.1462 17 6 3.6897 -3.2974 1.3111 18 8 3.1039 -2.6761 2.1659 19 8 4.0397 -4.5746 1.5306 20 1 -0.4850 0.8400 0.0004 21 1 3.5237 0.4650 -1.3733 22 1 5.0993 -0.3329 -1.1728 23 1 3.7961 -0.8716 -3.4407 24 1 3.2896 -3.1210 -3.3540 25 1 3.8379 -4.3600 -1.2810 26 1 2.3004 -3.5488 -0.9102 27 1 3.8013 -4.9540 2.3876 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214959587.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:49 Heat of formation + Delta-G solvation = -100.901899 kcal Electronic energy + Delta-G solvation = -12834.321759 eV Core-core repulsion = 10556.356650 eV Total energy + Delta-G solvation = -2277.965108 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.089 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.41409 -39.09297 -36.87139 -34.50922 -32.29734 -31.79780 -27.29144 -25.07995 -23.54143 -21.31366 -19.77650 -18.79827 -17.83973 -17.37363 -16.46565 -16.33342 -15.94556 -15.11780 -14.65800 -14.12960 -14.05219 -13.63542 -13.25414 -13.11124 -12.65788 -12.33482 -12.19849 -11.81830 -11.61598 -11.17611 -10.97628 -10.82641 -10.59031 -9.61856 -8.18815 -6.17126 1.29483 1.37772 1.44041 1.45533 1.67780 2.33045 2.38802 3.17856 3.85652 4.05193 4.19397 4.52369 4.59372 4.61837 4.74866 4.86117 4.97051 5.09024 5.17745 5.37429 5.45015 5.75235 5.79176 6.01006 6.29906 6.36218 6.82648 7.22162 7.43361 8.98569 Molecular weight = 196.09amu Principal moments of inertia in cm(-1) A = 0.034356 B = 0.017181 C = 0.014058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.795756 B = 1629.287054 C = 1991.323433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C 0.003 3.997 3 Si 0.940 3.060 4 H -0.260 1.260 5 H -0.306 1.306 6 H -0.249 1.249 7 C -0.470 4.470 8 H 0.033 0.967 9 C 0.017 3.983 10 H 0.023 0.977 11 C -0.097 4.097 12 C -0.148 4.148 13 C -0.151 4.151 14 C -0.062 4.062 15 C -0.063 4.063 16 H 0.125 0.875 17 C 0.482 3.518 18 O -0.538 6.538 19 O -0.512 6.512 20 H 0.259 0.741 21 H 0.046 0.954 22 H 0.085 0.915 23 H 0.112 0.888 24 H 0.124 0.876 25 H 0.098 0.902 26 H 0.051 0.949 27 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.704 -5.907 -3.161 13.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.192 4.192 3 Si 0.767 3.233 4 H -0.186 1.186 5 H -0.235 1.235 6 H -0.173 1.173 7 C -0.509 4.509 8 H 0.051 0.949 9 C -0.002 4.002 10 H 0.041 0.959 11 C -0.134 4.134 12 C -0.166 4.166 13 C -0.169 4.169 14 C -0.099 4.099 15 C -0.082 4.082 16 H 0.142 0.858 17 C 0.325 3.675 18 O -0.427 6.427 19 O -0.325 6.325 20 H 0.068 0.932 21 H 0.064 0.936 22 H 0.104 0.896 23 H 0.130 0.870 24 H 0.141 0.859 25 H 0.116 0.884 26 H 0.069 0.931 27 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 11.516 -5.478 -3.308 13.175 hybrid contribution -0.716 0.739 0.867 1.346 sum 10.800 -4.738 -2.441 12.044 Atomic orbital electron populations 1.70051 1.08123 1.27305 1.54577 1.25784 0.95371 1.02736 0.95329 0.85985 0.79297 0.79396 0.78606 1.18552 1.23480 1.17307 1.21014 0.90425 0.92520 1.46903 0.94865 1.19185 0.94927 0.91798 0.94320 0.95854 1.20840 1.00118 0.97867 0.94575 1.21955 1.01206 0.95277 0.98115 1.21932 1.01034 0.95951 0.97966 1.20221 0.99936 0.98252 0.91501 1.21075 1.02631 0.95581 0.88914 0.85750 1.23812 0.74292 0.79601 0.89838 1.90732 1.38784 1.65600 1.47574 1.84501 1.75866 1.27774 1.44397 0.93186 0.93620 0.89650 0.87021 0.85854 0.88364 0.93095 0.72034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.11 13.96 21.45 0.30 -61.81 15 2 C 0.00 0.15 5.45 84.66 0.46 0.61 15 3 Si 0.94 46.16 24.48 68.60 1.68 47.84 15 4 H -0.26 -11.80 6.80 99.48 0.68 -11.12 15 5 H -0.31 -15.36 7.11 99.48 0.71 -14.66 15 6 H -0.25 -11.41 6.53 99.48 0.65 -10.76 15 7 C -0.47 -26.76 6.85 25.60 0.18 -26.58 15 8 H 0.03 2.11 6.44 -2.91 -0.02 2.09 15 9 C 0.02 0.76 1.32 -11.40 -0.02 0.74 15 10 H 0.02 1.14 6.92 -2.39 -0.02 1.13 15 11 C -0.10 -3.81 5.03 29.66 0.15 -3.67 15 12 C -0.15 -5.18 9.53 27.04 0.26 -4.92 15 13 C -0.15 -5.00 9.61 27.04 0.26 -4.74 15 14 C -0.06 -2.15 4.86 29.66 0.14 -2.01 15 15 C -0.06 -2.34 2.46 -11.40 -0.03 -2.36 15 16 H 0.12 3.68 8.12 -2.39 -0.02 3.66 15 17 C 0.48 18.59 7.36 71.24 0.52 19.11 15 18 O -0.54 -26.13 15.89 21.98 0.35 -25.78 15 19 O -0.51 -14.42 13.37 -51.48 -0.69 -15.11 15 20 H 0.26 15.91 8.31 -92.71 -0.77 15.14 15 21 H 0.05 1.96 3.42 -2.38 -0.01 1.95 15 22 H 0.09 2.74 8.14 -2.39 -0.02 2.72 15 23 H 0.11 3.40 8.06 -2.91 -0.02 3.37 15 24 H 0.12 3.36 8.06 -2.91 -0.02 3.33 15 25 H 0.10 2.67 8.14 -2.39 -0.02 2.65 15 26 H 0.05 2.12 6.54 -2.39 -0.02 2.11 15 27 H 0.42 8.13 9.10 -74.06 -0.67 7.45 15 Total: -1.00 -73.60 221.87 3.99 -69.61 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: 0.42 Total: 9.06 kcal Atomic # 6 Polarization: -25.73 SS G_CDS: 1.93 Total: -23.81 kcal Atomic # 7 Polarization: -62.11 SS G_CDS: 0.30 Total: -61.81 kcal Atomic # 8 Polarization: -40.55 SS G_CDS: -0.34 Total: -40.89 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 1.68 Total: 47.84 kcal Total: -73.60 3.99 -69.61 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214959587.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.295 kcal (2) G-P(sol) polarization free energy of solvation -73.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds