Wall clock time and date at job start Mon Mar 30 2020 02:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.46959 * 2 1 4 4 C 1.34332 * 126.44280 * 90.00343 * 3 2 1 5 5 N 1.34471 * 107.66856 * 180.02562 * 4 3 2 6 6 C 1.30253 * 108.70602 * 0.02562 * 5 4 3 7 7 C 1.50696 * 125.62276 * 180.26292 * 6 5 4 8 8 N 1.46502 * 109.47064 * 89.69084 * 7 6 5 9 9 C 1.36939 * 120.00057 * 180.02562 * 8 7 6 10 10 H 1.08001 * 119.99911 * 359.97438 * 9 8 7 11 11 C 1.38805 * 120.00342 * 180.02562 * 9 8 7 12 12 N 1.31626 * 120.00018 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00346 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47443 * 89.99511 * 13 11 9 15 15 H 1.48500 * 109.46999 * 209.99947 * 13 11 9 16 16 H 1.48502 * 109.46920 * 329.99004 * 13 11 9 17 17 O 1.33974 * 108.75653 * 359.97438 * 6 5 4 18 18 H 1.09000 * 109.47334 * 59.99698 * 1 2 3 19 19 H 1.09003 * 109.46851 * 179.97438 * 1 2 3 20 20 H 1.08999 * 109.46637 * 299.99324 * 1 2 3 21 21 H 1.08999 * 109.46637 * 240.00676 * 2 1 3 22 22 H 1.08991 * 109.47564 * 120.00414 * 2 1 3 23 23 H 1.08005 * 126.16232 * 0.02562 * 4 3 2 24 24 H 1.09003 * 109.46949 * 209.69285 * 7 6 5 25 25 H 1.09000 * 109.47067 * 329.69047 * 7 6 5 26 26 H 0.96998 * 120.00435 * 0.02562 * 8 7 6 27 27 H 0.96990 * 120.00453 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2983 2.1731 1.0806 5 7 2.7221 3.3737 0.6479 6 6 2.7207 3.3726 -0.6547 7 6 3.1331 4.5249 -1.5339 8 7 4.5684 4.4364 -1.8137 9 6 5.1727 5.3825 -2.5979 10 1 4.5912 6.1937 -3.0103 11 6 6.5325 5.2983 -2.8635 12 7 7.2413 4.3094 -2.3613 13 14 7.3571 6.5893 -3.9325 14 1 7.8454 7.7013 -3.0781 15 1 8.5032 5.9777 -4.6520 16 1 6.3780 7.1150 -4.9176 17 8 2.2982 2.1758 -1.0840 18 1 -0.3634 0.5139 -0.8899 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3632 0.5137 0.8901 21 1 1.8933 -0.5137 -0.8901 22 1 1.8934 -0.5138 0.8898 23 1 2.1912 1.8686 2.1113 24 1 2.5770 4.4844 -2.4705 25 1 2.9194 5.4648 -1.0249 26 1 5.0907 3.7076 -1.4436 27 1 8.1915 4.2508 -2.5466 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231646069.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:22 Heat of formation + Delta-G solvation = 25.946965 kcal Electronic energy + Delta-G solvation = -11849.639290 eV Core-core repulsion = 9609.467512 eV Total energy + Delta-G solvation = -2240.171778 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.92199 -35.07910 -34.30783 -33.95868 -31.43007 -28.78901 -26.03037 -23.61107 -22.78779 -21.52196 -20.45114 -17.48684 -16.54788 -16.08264 -14.89141 -14.71763 -14.43709 -13.69419 -13.27722 -13.03426 -12.72801 -12.45464 -12.03144 -11.74324 -11.28765 -11.02724 -10.85846 -10.83610 -10.14316 -10.07109 -9.83258 -8.97544 -8.35721 -7.04466 -5.80486 -3.12999 1.78532 3.01441 3.08901 3.43586 3.48087 3.50123 4.47803 4.62760 4.79688 4.98015 5.09553 5.32898 5.44676 5.53157 5.64418 5.71073 5.96423 5.97941 6.14895 6.24984 6.36207 6.49121 6.70043 7.64173 8.18924 8.34466 9.46960 9.96672 10.33160 11.41909 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.080819 B = 0.006947 C = 0.006872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 346.368938 B = 4029.573933 C = 4073.819323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.035 4.035 3 C -0.062 4.062 4 C -0.043 4.043 5 N -0.480 5.480 6 C 0.207 3.793 7 C 0.245 3.755 8 N -0.726 5.726 9 C -0.247 4.247 10 H 0.077 0.923 11 C -0.009 4.009 12 N -0.929 5.929 13 Si 0.914 3.086 14 H -0.288 1.288 15 H -0.291 1.291 16 H -0.280 1.280 17 O -0.197 6.197 18 H 0.058 0.942 19 H 0.064 0.936 20 H 0.059 0.941 21 H 0.082 0.918 22 H 0.093 0.907 23 H 0.177 0.823 24 H 0.049 0.951 25 H 0.066 0.934 26 H 0.388 0.612 27 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.033 -7.462 4.246 14.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.073 4.073 3 C -0.115 4.115 4 C -0.182 4.182 5 N -0.209 5.209 6 C 0.000 4.000 7 C 0.117 3.883 8 N -0.372 5.372 9 C -0.378 4.378 10 H 0.095 0.905 11 C -0.206 4.206 12 N -0.577 5.577 13 Si 0.744 3.256 14 H -0.215 1.215 15 H -0.217 1.217 16 H -0.206 1.206 17 O -0.083 6.083 18 H 0.077 0.923 19 H 0.083 0.917 20 H 0.078 0.922 21 H 0.100 0.900 22 H 0.112 0.888 23 H 0.195 0.805 24 H 0.067 0.933 25 H 0.083 0.917 26 H 0.222 0.778 27 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -11.828 -6.810 4.446 14.354 hybrid contribution 0.561 -0.220 -0.673 0.903 sum -11.267 -7.030 3.773 13.806 Atomic orbital electron populations 1.21797 0.94074 1.02139 1.02656 1.19977 0.96118 0.86977 1.04181 1.23367 1.06883 0.96235 0.85062 1.23025 1.04802 0.90397 0.99979 1.70490 1.18379 1.22407 1.09614 1.26940 0.96759 0.85965 0.90359 1.19173 0.88277 0.87689 0.93189 1.42278 1.01412 1.32445 1.61095 1.19201 0.91706 1.03899 1.22951 0.90549 1.24803 0.96360 0.98543 1.00893 1.69687 1.07076 1.32247 1.48684 0.86093 0.79028 0.80616 0.79820 1.21502 1.21691 1.20550 1.84430 1.63703 1.23823 1.36359 0.92301 0.91673 0.92205 0.89988 0.88834 0.80549 0.93313 0.91684 0.77802 0.93300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.89 37.16 0.37 -0.97 15 2 C -0.03 -0.37 6.49 -27.88 -0.18 -0.55 15 3 C -0.06 -0.97 6.64 -35.69 -0.24 -1.21 15 4 C -0.04 -0.71 11.80 -17.77 -0.21 -0.92 15 5 N -0.48 -9.78 11.29 -11.10 -0.13 -9.91 15 6 C 0.21 4.28 7.71 -12.95 -0.10 4.18 15 7 C 0.24 5.30 6.88 -5.19 -0.04 5.26 15 8 N -0.73 -19.37 5.59 -61.09 -0.34 -19.71 15 9 C -0.25 -7.00 9.99 -15.06 -0.15 -7.15 15 10 H 0.08 2.04 7.83 -52.49 -0.41 1.63 15 11 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 15 12 N -0.93 -28.69 13.06 55.49 0.72 -27.96 15 13 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 15 14 H -0.29 -7.03 7.11 56.52 0.40 -6.63 15 15 H -0.29 -7.17 7.11 56.52 0.40 -6.77 15 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 17 O -0.20 -3.78 10.78 5.35 0.06 -3.72 15 18 H 0.06 0.58 8.14 -51.93 -0.42 0.16 15 19 H 0.06 0.44 8.14 -51.93 -0.42 0.02 15 20 H 0.06 0.52 8.14 -51.93 -0.42 0.09 15 21 H 0.08 0.86 8.14 -51.93 -0.42 0.43 15 22 H 0.09 0.79 8.14 -51.93 -0.42 0.37 15 23 H 0.18 2.25 8.06 -52.48 -0.42 1.82 15 24 H 0.05 0.99 8.14 -51.93 -0.42 0.56 15 25 H 0.07 1.36 8.14 -51.93 -0.42 0.94 15 26 H 0.39 11.17 7.66 -40.82 -0.31 10.86 15 27 H 0.26 7.61 8.31 -40.82 -0.34 7.27 15 LS Contribution 245.35 15.07 3.70 3.70 Total: -1.00 -32.48 245.35 -4.89 -37.38 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -3.24 Total: 4.54 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -0.64 Total: -1.73 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: 0.26 Total: -57.57 kcal Atomic # 8 Polarization: -3.78 SS G_CDS: 0.06 Total: -3.72 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -32.48 -4.89 -37.38 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231646069.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.322 kcal (2) G-P(sol) polarization free energy of solvation -32.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds