Wall clock time and date at job start Mon Mar 30 2020 02:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00291 * 2 1 4 4 H 1.48499 * 109.47110 * 269.99536 * 3 2 1 5 5 H 1.48501 * 109.47137 * 29.99528 * 3 2 1 6 6 H 1.48496 * 109.47323 * 149.99569 * 3 2 1 7 7 C 1.37878 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00179 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99714 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46807 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46916 * 179.97438 * 10 9 7 12 12 C 1.46905 * 110.99870 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47066 * 180.02562 * 12 11 10 14 14 C 1.35451 * 126.77702 * 90.00119 * 13 12 11 15 15 C 1.41379 * 103.99089 * 179.97438 * 14 13 12 16 16 N 1.30183 * 106.39293 * 359.97438 * 15 14 13 17 17 O 1.20926 * 111.60310 * 359.72622 * 16 15 14 18 18 H 0.97007 * 120.00038 * 0.02562 * 1 2 3 19 19 H 1.08995 * 109.47327 * 60.00338 * 9 7 2 20 20 H 1.08996 * 109.47062 * 299.99195 * 9 7 2 21 21 H 1.09004 * 109.46889 * 60.00274 * 10 9 7 22 22 H 1.08995 * 109.47384 * 299.99914 * 10 9 7 23 23 H 1.00901 * 111.00067 * 303.95263 * 11 10 9 24 24 H 1.09001 * 109.46798 * 300.00327 * 12 11 10 25 25 H 1.08998 * 109.46961 * 60.00043 * 12 11 10 26 26 H 1.07999 * 128.00827 * 359.97438 * 14 13 12 27 27 H 1.07990 * 126.80804 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5106 -4.9343 0.0012 12 6 2.4351 -6.0760 0.0018 13 6 1.6470 -7.3604 0.0018 14 6 1.2234 -8.0519 -1.0832 15 6 0.5420 -9.1631 -0.5356 16 7 0.6180 -9.0397 0.7581 17 8 1.2327 -8.0478 1.0754 18 1 -0.4850 0.8401 -0.0004 19 1 0.6246 -2.5571 -0.8897 20 1 0.6240 -2.5567 0.8903 21 1 2.8718 -3.6043 0.8906 22 1 2.8718 -3.6044 -0.8894 23 1 0.8744 -4.9841 0.7828 24 1 3.0631 -6.0353 -0.8882 25 1 3.0630 -6.0345 0.8918 26 1 1.3717 -7.8104 -2.1253 27 1 0.0550 -9.9570 -1.0822 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231897259.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:55 Heat of formation + Delta-G solvation = 31.522800 kcal Electronic energy + Delta-G solvation = -11594.458498 eV Core-core repulsion = 9354.528507 eV Total energy + Delta-G solvation = -2239.929991 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -45.84730 -37.78190 -35.26977 -34.72348 -33.25458 -30.91910 -27.33123 -25.13045 -24.38780 -22.50629 -22.16158 -18.62215 -18.43787 -18.21443 -16.91139 -16.43722 -15.99336 -15.45027 -14.79160 -14.36407 -14.16029 -13.88106 -13.45141 -13.05616 -12.79985 -12.42605 -12.26379 -11.90197 -11.44199 -11.41303 -11.30451 -10.55005 -10.41208 -9.38466 -8.18676 -6.30036 0.47365 1.39133 1.43032 1.44212 1.55127 2.12332 2.42629 3.15398 3.42640 3.50891 3.65420 4.14887 4.29134 4.47103 4.60484 4.63297 4.71827 4.86432 5.09098 5.18825 5.46049 5.67563 5.77584 6.07390 6.21299 6.38975 6.88029 7.27059 7.39541 8.93534 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.102775 B = 0.005561 C = 0.005473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 272.374460 B = 5034.261025 C = 5114.798561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.967 3.033 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.261 1.261 7 C -0.543 4.543 8 H 0.065 0.935 9 C 0.028 3.972 10 C 0.084 3.916 11 N -0.695 5.695 12 C 0.140 3.860 13 C -0.032 4.032 14 C -0.216 4.216 15 C -0.007 4.007 16 N -0.400 5.400 17 O 0.071 5.929 18 H 0.263 0.737 19 H -0.005 1.005 20 H -0.011 1.011 21 H 0.029 0.971 22 H 0.072 0.928 23 H 0.339 0.661 24 H 0.123 0.877 25 H 0.062 0.938 26 H 0.195 0.805 27 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.178 -13.831 -2.150 14.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.792 3.208 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.185 1.185 7 C -0.581 4.581 8 H 0.083 0.917 9 C -0.010 4.010 10 C -0.044 4.044 11 N -0.327 5.327 12 C 0.011 3.989 13 C -0.096 4.096 14 C -0.238 4.238 15 C -0.185 4.185 16 N -0.108 5.108 17 O 0.009 5.991 18 H 0.072 0.928 19 H 0.014 0.986 20 H 0.008 0.992 21 H 0.047 0.953 22 H 0.090 0.910 23 H 0.156 0.844 24 H 0.141 0.859 25 H 0.080 0.920 26 H 0.212 0.788 27 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 4.529 -14.450 -1.778 15.247 hybrid contribution 0.350 1.194 0.168 1.255 sum 4.879 -13.256 -1.610 14.217 Atomic orbital electron populations 1.70115 1.07906 1.27765 1.51566 1.25993 0.95738 1.03471 0.94732 0.85416 0.78647 0.78289 0.78494 1.19740 1.21044 1.18525 1.21634 0.93733 0.92065 1.50671 0.91653 1.18953 0.94464 0.92427 0.95130 1.21840 0.95593 0.87098 0.99887 1.60590 1.20071 1.01644 1.50407 1.20462 0.91961 0.82121 1.04362 1.24741 1.01227 0.97333 0.86269 1.22958 1.03172 0.95680 1.01978 1.25669 1.01437 1.01596 0.89756 1.73871 1.14026 1.04183 1.18671 1.84773 1.52602 1.27284 1.34435 0.92819 0.98629 0.99224 0.95311 0.90951 0.84354 0.85935 0.92001 0.78795 0.76112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.79 13.29 21.45 0.28 -56.50 15 2 C 0.00 -0.09 5.46 84.66 0.46 0.38 15 3 Si 0.97 43.62 29.54 68.60 2.03 45.65 15 4 H -0.27 -11.84 7.11 99.48 0.71 -11.14 15 5 H -0.28 -12.67 7.11 99.48 0.71 -11.97 15 6 H -0.26 -11.14 7.11 99.48 0.71 -10.44 15 7 C -0.54 -30.23 9.11 25.60 0.23 -30.00 15 8 H 0.07 3.43 7.74 -2.91 -0.02 3.40 15 9 C 0.03 1.44 5.23 29.85 0.16 1.60 15 10 C 0.08 3.26 5.62 86.30 0.49 3.75 15 11 N -0.70 -22.99 6.49 -517.92 -3.36 -26.35 15 12 C 0.14 3.45 6.25 85.55 0.53 3.99 15 13 C -0.03 -0.80 7.00 25.04 0.18 -0.63 15 14 C -0.22 -4.64 11.09 22.40 0.25 -4.40 15 15 C -0.01 -0.14 12.17 85.71 1.04 0.90 15 16 N -0.40 -11.18 12.07 -59.25 -0.72 -11.89 15 17 O 0.07 2.04 11.20 71.59 0.80 2.84 15 18 H 0.26 15.04 8.31 -92.70 -0.77 14.27 15 19 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 15 20 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 15 21 H 0.03 1.07 8.14 -2.39 -0.02 1.05 15 22 H 0.07 2.68 8.14 -2.39 -0.02 2.66 15 23 H 0.34 11.55 8.72 -89.69 -0.78 10.76 15 24 H 0.12 2.54 8.14 -2.39 -0.02 2.52 15 25 H 0.06 1.40 8.14 -2.39 -0.02 1.38 15 26 H 0.19 3.17 8.06 -2.91 -0.02 3.14 15 27 H 0.22 2.95 8.06 -2.92 -0.02 2.92 15 Total: -1.00 -65.75 245.58 2.76 -62.99 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: 0.38 Total: 7.67 kcal Atomic # 6 Polarization: -27.74 SS G_CDS: 3.34 Total: -24.41 kcal Atomic # 7 Polarization: -90.95 SS G_CDS: -3.79 Total: -94.74 kcal Atomic # 8 Polarization: 2.04 SS G_CDS: 0.80 Total: 2.84 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -65.75 2.76 -62.99 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231897259.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.513 kcal (2) G-P(sol) polarization free energy of solvation -65.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds