Wall clock time and date at job start Mon Mar 30 2020 02:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46893 * 2 1 4 4 H 1.08996 * 109.47591 * 305.00001 * 3 2 1 5 5 C 1.50705 * 109.46863 * 185.00040 * 3 2 1 6 6 H 1.07994 * 120.00091 * 240.00018 * 5 3 2 7 7 C 1.37876 * 119.99598 * 60.00112 * 5 3 2 8 8 N 1.31511 * 120.00471 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99678 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47118 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46974 * 120.00010 * 9 7 5 12 12 H 1.48497 * 109.47265 * 240.00051 * 9 7 5 13 13 N 1.46496 * 109.46951 * 65.00424 * 3 2 1 14 14 C 1.38691 * 125.98683 * 59.68720 * 13 3 2 15 15 C 1.32869 * 107.91763 * 180.26334 * 14 13 3 16 16 N 1.38698 * 107.91058 * 359.97438 * 15 14 13 17 17 H 0.97001 * 125.97877 * 179.97438 * 16 15 14 18 18 C 1.34752 * 108.03470 * 0.02562 * 16 15 14 19 19 O 1.21795 * 125.94854 * 179.97438 * 18 16 15 20 20 H 1.08995 * 109.47201 * 179.97438 * 1 2 3 21 21 H 1.09006 * 109.46883 * 300.00172 * 1 2 3 22 22 H 1.09003 * 109.47306 * 59.99868 * 1 2 3 23 23 H 1.08999 * 109.46682 * 240.00204 * 2 1 3 24 24 H 1.08994 * 109.47417 * 120.00397 * 2 1 3 25 25 H 0.97004 * 120.00475 * 180.02562 * 8 7 5 26 26 H 1.08000 * 126.04413 * 0.26316 * 14 13 3 27 27 H 1.08003 * 126.04425 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6522 7 6 4.1432 0.8784 -1.2280 8 7 3.4061 0.3376 -2.1734 9 14 6.0049 0.8813 -1.3819 10 1 6.5987 1.5463 -0.1943 11 1 6.4970 -0.5174 -1.4631 12 1 6.3989 1.6168 -2.6103 13 7 1.6524 2.0974 1.2518 14 6 2.0115 1.6922 2.5287 15 6 1.4616 2.5361 3.3952 16 7 0.7498 3.4837 2.6746 17 1 0.2459 4.2235 3.0484 18 6 0.8801 3.1960 1.3646 19 8 0.3857 3.8201 0.4429 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 1.8932 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 3.8291 -0.0609 -2.9500 26 1 2.6290 0.8411 2.7752 27 1 1.5528 2.4920 4.4704 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231930626.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:39 Heat of formation + Delta-G solvation = -16.918601 kcal Electronic energy + Delta-G solvation = -12655.826361 eV Core-core repulsion = 10413.795792 eV Total energy + Delta-G solvation = -2242.030568 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.91782 -37.69874 -37.24874 -34.26005 -32.77917 -29.78238 -28.80763 -25.38228 -23.12745 -22.65587 -20.92935 -19.14063 -18.32780 -17.12915 -16.75486 -16.29359 -15.54979 -15.28649 -14.80930 -14.51361 -13.97486 -13.40300 -13.25641 -13.01478 -12.73800 -12.61584 -12.13045 -12.07722 -11.72917 -11.49288 -11.26834 -10.62985 -10.49330 -8.50777 -8.17759 -6.37740 1.42044 1.43828 1.55337 1.67199 1.85066 2.08836 2.41369 3.08118 3.10064 4.29893 4.44846 4.50503 4.63597 4.81287 4.86973 4.92555 5.06468 5.18879 5.33152 5.51218 5.65518 5.77547 5.95569 6.09784 6.37608 6.67650 6.87330 7.31068 7.59484 8.84674 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.039596 B = 0.012894 C = 0.011569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.978240 B = 2171.102933 C = 2419.711638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.116 4.116 3 C 0.285 3.715 4 H 0.004 0.996 5 C -0.546 4.546 6 H 0.062 0.938 7 C 0.020 3.980 8 N -0.913 5.913 9 Si 0.971 3.029 10 H -0.266 1.266 11 H -0.270 1.270 12 H -0.285 1.285 13 N -0.511 5.511 14 C -0.015 4.015 15 C -0.018 4.018 16 N -0.626 5.626 17 H 0.438 0.562 18 C 0.609 3.391 19 O -0.648 6.648 20 H 0.068 0.932 21 H 0.037 0.963 22 H 0.025 0.975 23 H 0.083 0.917 24 H 0.058 0.942 25 H 0.268 0.732 26 H 0.190 0.810 27 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.101 -0.974 11.930 12.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.155 4.155 3 C 0.184 3.816 4 H 0.022 0.978 5 C -0.584 4.584 6 H 0.080 0.920 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.795 3.205 10 H -0.190 1.190 11 H -0.195 1.195 12 H -0.211 1.211 13 N -0.227 5.227 14 C -0.139 4.139 15 C -0.142 4.142 16 N -0.269 5.269 17 H 0.280 0.720 18 C 0.310 3.690 19 O -0.534 6.534 20 H 0.087 0.913 21 H 0.056 0.944 22 H 0.044 0.956 23 H 0.101 0.899 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.207 0.793 27 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -1.337 -0.786 11.014 11.122 hybrid contribution 0.549 0.454 -0.522 0.883 sum -0.788 -0.331 10.492 10.526 Atomic orbital electron populations 1.21663 0.96945 1.01000 0.99527 1.21734 0.93889 0.97098 1.02773 1.18727 0.94473 0.90073 0.78319 0.97787 1.21561 0.91051 1.39038 1.06776 0.92017 1.25730 1.03416 0.94210 0.94726 1.70002 1.37045 1.38215 1.09824 0.85318 0.78989 0.78192 0.77982 1.19042 1.19507 1.21112 1.45954 1.43096 1.24670 1.08992 1.22274 1.05823 1.04037 0.81774 1.22392 1.00808 0.91359 0.99593 1.43111 1.48763 1.29782 1.05230 0.72015 1.16767 0.84210 0.83788 0.84255 1.90915 1.59781 1.59216 1.43459 0.91341 0.94384 0.95550 0.89858 0.92357 0.92264 0.79341 0.75079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.55 9.80 71.98 0.71 -4.85 15 2 C -0.12 -5.44 5.24 30.60 0.16 -5.28 15 3 C 0.28 15.00 2.33 44.25 0.10 15.11 15 4 H 0.00 0.26 7.73 -2.39 -0.02 0.25 15 5 C -0.55 -29.74 8.52 25.60 0.22 -29.52 15 6 H 0.06 3.31 7.75 -2.91 -0.02 3.29 15 7 C 0.02 1.06 5.29 84.65 0.45 1.51 15 8 N -0.91 -51.46 11.29 21.45 0.24 -51.22 15 9 Si 0.97 42.40 29.54 68.60 2.03 44.43 15 10 H -0.27 -11.27 7.11 99.48 0.71 -10.56 15 11 H -0.27 -11.22 7.11 99.48 0.71 -10.51 15 12 H -0.29 -12.52 7.11 99.48 0.71 -11.81 15 13 N -0.51 -23.00 2.07 -637.52 -1.32 -24.32 15 14 C -0.01 -0.50 10.49 82.43 0.86 0.37 15 15 C -0.02 -0.45 11.95 82.43 0.98 0.53 15 16 N -0.63 -19.57 6.15 -323.81 -1.99 -21.57 15 17 H 0.44 10.48 8.96 -92.71 -0.83 9.65 15 18 C 0.61 27.93 8.92 179.07 1.60 29.52 15 19 O -0.65 -36.11 17.61 -4.65 -0.08 -36.19 15 20 H 0.07 2.38 8.14 -2.39 -0.02 2.36 15 21 H 0.04 1.52 7.75 -2.38 -0.02 1.50 15 22 H 0.03 1.16 8.14 -2.39 -0.02 1.14 15 23 H 0.08 4.35 5.95 -2.39 -0.01 4.33 15 24 H 0.06 2.47 7.79 -2.39 -0.02 2.46 15 25 H 0.27 14.21 8.31 -92.71 -0.77 13.44 15 26 H 0.19 5.37 8.06 -2.91 -0.02 5.35 15 27 H 0.23 2.87 8.06 -2.91 -0.02 2.85 15 Total: -1.00 -72.04 237.16 4.30 -67.74 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: 0.34 Total: 13.73 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: 5.08 Total: 7.39 kcal Atomic # 7 Polarization: -94.04 SS G_CDS: -3.07 Total: -97.11 kcal Atomic # 8 Polarization: -36.11 SS G_CDS: -0.08 Total: -36.19 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -72.04 4.30 -67.74 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231930626.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.826 kcal (2) G-P(sol) polarization free energy of solvation -72.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds