Wall clock time and date at job start Mon Mar 30 2020 02:18:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50706 * 1
3 3 N 1.29949 * 126.28516 * 2 1
4 4 O 1.21303 * 110.24828 * 179.97438 * 3 2 1
5 5 C 1.33639 * 109.81167 * 0.02562 * 4 3 2
6 6 C 1.50706 * 126.55166 * 179.97438 * 5 4 3
7 7 C 1.52991 * 109.47046 * 269.97597 * 6 5 4
8 8 H 1.09004 * 109.47135 * 304.99507 * 7 6 5
9 9 C 1.53000 * 109.47501 * 64.99669 * 7 6 5
10 10 C 1.50700 * 109.47212 * 184.99774 * 7 6 5
11 11 H 1.07997 * 119.99629 * 0.02562 * 10 7 6
12 12 C 1.37880 * 120.00284 * 179.97438 * 10 7 6
13 13 N 1.31514 * 119.99882 * 180.02562 * 12 10 7
14 14 Si 1.86801 * 119.99782 * 0.02562 * 12 10 7
15 15 H 1.48500 * 109.46925 * 90.00075 * 14 12 10
16 16 H 1.48501 * 109.46775 * 209.99757 * 14 12 10
17 17 H 1.48497 * 109.47187 * 329.99764 * 14 12 10
18 18 N 1.31134 * 106.89726 * 359.76539 * 5 4 3
19 19 H 1.09001 * 109.46953 * 90.02334 * 1 2 3
20 20 H 1.09000 * 109.47318 * 210.01931 * 1 2 3
21 21 H 1.09000 * 109.47161 * 330.02562 * 1 2 3
22 22 H 1.09002 * 109.46756 * 29.97587 * 6 5 4
23 23 H 1.09001 * 109.47141 * 149.96983 * 6 5 4
24 24 H 1.08998 * 109.47004 * 300.00317 * 9 7 6
25 25 H 1.09004 * 109.47058 * 59.99791 * 9 7 6
26 26 H 1.08996 * 109.47449 * 179.97438 * 9 7 6
27 27 H 0.97003 * 119.99383 * 179.97438 * 13 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 7 2.2761 1.0475 0.0000
4 8 3.4419 0.7124 0.0005
5 6 3.5299 -0.6211 0.0003
6 6 4.7970 -1.4370 0.0003
7 6 5.2255 -1.7134 -1.4422
8 1 4.4042 -2.1861 -1.9809
9 6 5.5928 -0.3952 -2.1267
10 6 6.4213 -2.6305 -1.4440
11 1 6.8340 -2.9815 -0.5098
12 6 6.9877 -3.0224 -2.6385
13 7 8.0310 -3.8232 -2.6400
14 14 6.2734 -2.4159 -4.2544
15 1 6.9363 -1.1450 -4.6426
16 1 6.5009 -3.4354 -5.3098
17 1 4.8151 -2.1850 -4.0953
18 7 2.3030 -1.0840 0.0048
19 1 -0.3633 -0.0004 -1.0277
20 1 -0.3634 -0.8898 0.5141
21 1 -0.3633 0.8902 0.5134
22 1 5.5844 -0.8852 0.5139
23 1 4.6208 -2.3818 0.5144
24 1 4.7279 0.2681 -2.1253
25 1 6.4140 0.0775 -1.5879
26 1 5.8985 -0.5922 -3.1542
27 1 8.4292 -4.0992 -3.4804
RHF calculation, no. of doubly occupied orbitals= 36
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000235088018.mol2 27
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:18:30
Heat of formation + Delta-G solvation = 34.831550 kcal
Electronic energy + Delta-G solvation = -12275.265622 eV
Core-core repulsion = 10035.479108 eV
Total energy + Delta-G solvation = -2239.786513 eV
No. of doubly occupied orbitals = 36
Molecular weight
(most abundant/longest-lived isotopes) = 196.095 amu
Computer time = 0.16 seconds
Orbital eigenvalues (eV)
-46.54410 -37.64542 -36.92357 -34.50966 -33.08867 -30.10301 -28.77924 -27.13865
-24.66009 -22.92466 -21.37803 -19.21486 -18.83104 -18.20453 -16.81525 -15.88406
-15.47078 -14.91553 -14.82223 -14.45890 -14.18771 -13.71001 -13.57436 -13.16190
-12.98960 -12.62036 -12.34280 -12.12932 -12.02214 -11.77697 -11.39723 -11.13561
-10.78865 -10.67919 -8.29180 -6.32978 0.13947 1.23836 1.30947 1.37423
1.45658 1.86961 2.32354 2.77677 3.07022 3.12388 4.02486 4.16273
4.32073 4.47990 4.58423 4.59566 4.66869 4.80741 4.87933 4.93660
5.05201 5.12514 5.27404 5.57148 5.62883 6.26779 6.74006 7.16845
7.32640 8.86668
Molecular weight = 196.10amu
Principal moments of inertia in cm(-1)
A = 0.059946 B = 0.009469 C = 0.009145
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 466.977418 B = 2956.259481 C = 3060.991587
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.059 4.059
2 C 0.161 3.839
3 N -0.415 5.415
4 O 0.061 5.939
5 C 0.209 3.791
6 C -0.008 4.008
7 C 0.016 3.984
8 H 0.022 0.978
9 C -0.150 4.150
10 C -0.513 4.513
11 H 0.055 0.945
12 C 0.022 3.978
13 N -0.942 5.942
14 Si 0.940 3.060
15 H -0.266 1.266
16 H -0.299 1.299
17 H -0.259 1.259
18 N -0.515 5.515
19 H 0.100 0.900
20 H 0.103 0.897
21 H 0.102 0.898
22 H 0.115 0.885
23 H 0.111 0.889
24 H 0.042 0.958
25 H 0.070 0.930
26 H 0.031 0.969
27 H 0.266 0.734
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.014 7.959 3.728 14.885
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.117 4.117
2 C -0.111 4.111
3 N -0.129 5.129
4 O 0.008 5.992
5 C -0.010 4.010
6 C -0.047 4.047
7 C -0.004 4.004
8 H 0.041 0.959
9 C -0.207 4.207
10 C -0.551 4.551
11 H 0.073 0.927
12 C -0.176 4.176
13 N -0.582 5.582
14 Si 0.769 3.231
15 H -0.192 1.192
16 H -0.227 1.227
17 H -0.184 1.184
18 N -0.250 5.250
19 H 0.119 0.881
20 H 0.121 0.879
21 H 0.121 0.879
22 H 0.134 0.866
23 H 0.129 0.871
24 H 0.061 0.939
25 H 0.089 0.911
26 H 0.049 0.951
27 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges -12.510 8.382 3.645 15.494
hybrid contribution 0.360 -0.119 -0.925 1.000
sum -12.150 8.264 2.720 14.944
Atomic orbital electron populations
1.20348 0.80041 1.05885 1.05448 1.26755 1.02301 0.83080 0.99013
1.74556 0.89703 1.24789 1.23868 1.85263 1.22402 1.25201 1.66302
1.29372 0.97525 0.81776 0.92334 1.20397 0.86664 0.97539 1.00095
1.19080 0.95790 0.93802 0.91754 0.95940 1.22183 1.00843 0.97914
0.99750 1.21139 1.12393 1.27707 0.93843 0.92673 1.25679 0.94815
0.94817 1.02339 1.70003 1.23845 1.36411 1.27965 0.85976 0.80020
0.77387 0.79752 1.19225 1.22719 1.18362 1.71968 1.00356 1.30141
1.22508 0.88115 0.87872 0.87914 0.86631 0.87120 0.93948 0.91145
0.95055 0.92443
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -1.13 10.51 71.24 0.75 -0.38 15
2 C 0.16 4.90 8.22 138.47 1.14 6.04 15
3 N -0.42 -13.74 12.16 -60.32 -0.73 -14.48 15
4 O 0.06 2.09 10.75 74.86 0.80 2.89 15
5 C 0.21 7.27 6.92 88.38 0.61 7.88 15
6 C -0.01 -0.29 5.26 29.85 0.16 -0.13 15
7 C 0.02 0.68 1.88 -11.54 -0.02 0.66 15
8 H 0.02 1.04 7.20 -2.38 -0.02 1.02 15
9 C -0.15 -6.03 8.49 71.98 0.61 -5.42 15
10 C -0.51 -27.08 9.14 25.60 0.23 -26.84 15
11 H 0.06 3.12 7.99 -2.91 -0.02 3.09 15
12 C 0.02 1.20 5.45 84.66 0.46 1.66 15
13 N -0.94 -56.64 13.96 21.45 0.30 -56.34 15
14 Si 0.94 44.20 24.37 68.60 1.67 45.87 15
15 H -0.27 -11.91 6.87 99.48 0.68 -11.23 15
16 H -0.30 -14.11 7.11 99.48 0.71 -13.40 15
17 H -0.26 -11.69 6.53 99.48 0.65 -11.04 15
18 N -0.51 -17.99 11.55 -303.19 -3.50 -21.50 15
19 H 0.10 1.64 8.14 -2.39 -0.02 1.62 15
20 H 0.10 1.68 8.14 -2.39 -0.02 1.66 15
21 H 0.10 1.55 8.14 -2.39 -0.02 1.53 15
22 H 0.12 3.60 8.14 -2.39 -0.02 3.58 15
23 H 0.11 3.81 8.14 -2.39 -0.02 3.79 15
24 H 0.04 1.54 6.93 -2.39 -0.02 1.53 15
25 H 0.07 2.65 8.14 -2.38 -0.02 2.63 15
26 H 0.03 1.32 3.27 -2.39 -0.01 1.32 15
27 H 0.27 15.11 8.31 -92.71 -0.77 14.34 15
Total: -1.00 -63.19 231.71 3.57 -59.62
By element:
Atomic # 1 Polarization: -0.64 SS G_CDS: 1.09 Total: 0.45 kcal
Atomic # 6 Polarization: -20.46 SS G_CDS: 3.94 Total: -16.52 kcal
Atomic # 7 Polarization: -88.37 SS G_CDS: -3.94 Total: -92.31 kcal
Atomic # 8 Polarization: 2.09 SS G_CDS: 0.80 Total: 2.89 kcal
Atomic # 14 Polarization: 44.20 SS G_CDS: 1.67 Total: 45.87 kcal
Total: -63.19 3.57 -59.62 kcal
The number of atoms in the molecule is 27
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000235088018.mol2 27
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 94.453 kcal
(2) G-P(sol) polarization free energy of solvation -63.189 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.264 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.568 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.621 kcal
(6) G-S(sol) free energy of system = (1) + (5) 34.832 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.16 seconds