Wall clock time and date at job start Mon Mar 30 2020 02:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29949 * 126.28516 * 2 1 4 4 O 1.21303 * 110.24828 * 179.97438 * 3 2 1 5 5 C 1.33639 * 109.81167 * 0.02562 * 4 3 2 6 6 C 1.50706 * 126.55166 * 179.97438 * 5 4 3 7 7 C 1.52991 * 109.47046 * 269.97597 * 6 5 4 8 8 H 1.09004 * 109.47135 * 304.99507 * 7 6 5 9 9 C 1.53000 * 109.47501 * 64.99669 * 7 6 5 10 10 C 1.50700 * 109.47212 * 184.99774 * 7 6 5 11 11 H 1.07997 * 119.99629 * 0.02562 * 10 7 6 12 12 C 1.37880 * 120.00284 * 179.97438 * 10 7 6 13 13 N 1.31514 * 119.99882 * 180.02562 * 12 10 7 14 14 Si 1.86801 * 119.99782 * 0.02562 * 12 10 7 15 15 H 1.48500 * 109.46925 * 90.00075 * 14 12 10 16 16 H 1.48501 * 109.46775 * 209.99757 * 14 12 10 17 17 H 1.48497 * 109.47187 * 329.99764 * 14 12 10 18 18 N 1.31134 * 106.89726 * 359.76539 * 5 4 3 19 19 H 1.09001 * 109.46953 * 90.02334 * 1 2 3 20 20 H 1.09000 * 109.47318 * 210.01931 * 1 2 3 21 21 H 1.09000 * 109.47161 * 330.02562 * 1 2 3 22 22 H 1.09002 * 109.46756 * 29.97587 * 6 5 4 23 23 H 1.09001 * 109.47141 * 149.96983 * 6 5 4 24 24 H 1.08998 * 109.47004 * 300.00317 * 9 7 6 25 25 H 1.09004 * 109.47058 * 59.99791 * 9 7 6 26 26 H 1.08996 * 109.47449 * 179.97438 * 9 7 6 27 27 H 0.97003 * 119.99383 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7124 0.0005 5 6 3.5299 -0.6211 0.0003 6 6 4.7970 -1.4370 0.0003 7 6 5.2255 -1.7134 -1.4422 8 1 4.4042 -2.1861 -1.9809 9 6 5.5928 -0.3952 -2.1267 10 6 6.4213 -2.6305 -1.4440 11 1 6.8340 -2.9815 -0.5098 12 6 6.9877 -3.0224 -2.6385 13 7 8.0310 -3.8232 -2.6400 14 14 6.2734 -2.4159 -4.2544 15 1 6.9363 -1.1450 -4.6426 16 1 6.5009 -3.4354 -5.3098 17 1 4.8151 -2.1850 -4.0953 18 7 2.3030 -1.0840 0.0048 19 1 -0.3633 -0.0004 -1.0277 20 1 -0.3634 -0.8898 0.5141 21 1 -0.3633 0.8902 0.5134 22 1 5.5844 -0.8852 0.5139 23 1 4.6208 -2.3818 0.5144 24 1 4.7279 0.2681 -2.1253 25 1 6.4140 0.0775 -1.5879 26 1 5.8985 -0.5922 -3.1542 27 1 8.4292 -4.0992 -3.4804 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235088018.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:30 Heat of formation + Delta-G solvation = 34.831550 kcal Electronic energy + Delta-G solvation = -12275.265622 eV Core-core repulsion = 10035.479108 eV Total energy + Delta-G solvation = -2239.786513 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -46.54410 -37.64542 -36.92357 -34.50966 -33.08867 -30.10301 -28.77924 -27.13865 -24.66009 -22.92466 -21.37803 -19.21486 -18.83104 -18.20453 -16.81525 -15.88406 -15.47078 -14.91553 -14.82223 -14.45890 -14.18771 -13.71001 -13.57436 -13.16190 -12.98960 -12.62036 -12.34280 -12.12932 -12.02214 -11.77697 -11.39723 -11.13561 -10.78865 -10.67919 -8.29180 -6.32978 0.13947 1.23836 1.30947 1.37423 1.45658 1.86961 2.32354 2.77677 3.07022 3.12388 4.02486 4.16273 4.32073 4.47990 4.58423 4.59566 4.66869 4.80741 4.87933 4.93660 5.05201 5.12514 5.27404 5.57148 5.62883 6.26779 6.74006 7.16845 7.32640 8.86668 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.059946 B = 0.009469 C = 0.009145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.977418 B = 2956.259481 C = 3060.991587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.161 3.839 3 N -0.415 5.415 4 O 0.061 5.939 5 C 0.209 3.791 6 C -0.008 4.008 7 C 0.016 3.984 8 H 0.022 0.978 9 C -0.150 4.150 10 C -0.513 4.513 11 H 0.055 0.945 12 C 0.022 3.978 13 N -0.942 5.942 14 Si 0.940 3.060 15 H -0.266 1.266 16 H -0.299 1.299 17 H -0.259 1.259 18 N -0.515 5.515 19 H 0.100 0.900 20 H 0.103 0.897 21 H 0.102 0.898 22 H 0.115 0.885 23 H 0.111 0.889 24 H 0.042 0.958 25 H 0.070 0.930 26 H 0.031 0.969 27 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.014 7.959 3.728 14.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.111 4.111 3 N -0.129 5.129 4 O 0.008 5.992 5 C -0.010 4.010 6 C -0.047 4.047 7 C -0.004 4.004 8 H 0.041 0.959 9 C -0.207 4.207 10 C -0.551 4.551 11 H 0.073 0.927 12 C -0.176 4.176 13 N -0.582 5.582 14 Si 0.769 3.231 15 H -0.192 1.192 16 H -0.227 1.227 17 H -0.184 1.184 18 N -0.250 5.250 19 H 0.119 0.881 20 H 0.121 0.879 21 H 0.121 0.879 22 H 0.134 0.866 23 H 0.129 0.871 24 H 0.061 0.939 25 H 0.089 0.911 26 H 0.049 0.951 27 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.510 8.382 3.645 15.494 hybrid contribution 0.360 -0.119 -0.925 1.000 sum -12.150 8.264 2.720 14.944 Atomic orbital electron populations 1.20348 0.80041 1.05885 1.05448 1.26755 1.02301 0.83080 0.99013 1.74556 0.89703 1.24789 1.23868 1.85263 1.22402 1.25201 1.66302 1.29372 0.97525 0.81776 0.92334 1.20397 0.86664 0.97539 1.00095 1.19080 0.95790 0.93802 0.91754 0.95940 1.22183 1.00843 0.97914 0.99750 1.21139 1.12393 1.27707 0.93843 0.92673 1.25679 0.94815 0.94817 1.02339 1.70003 1.23845 1.36411 1.27965 0.85976 0.80020 0.77387 0.79752 1.19225 1.22719 1.18362 1.71968 1.00356 1.30141 1.22508 0.88115 0.87872 0.87914 0.86631 0.87120 0.93948 0.91145 0.95055 0.92443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.13 10.51 71.24 0.75 -0.38 15 2 C 0.16 4.90 8.22 138.47 1.14 6.04 15 3 N -0.42 -13.74 12.16 -60.32 -0.73 -14.48 15 4 O 0.06 2.09 10.75 74.86 0.80 2.89 15 5 C 0.21 7.27 6.92 88.38 0.61 7.88 15 6 C -0.01 -0.29 5.26 29.85 0.16 -0.13 15 7 C 0.02 0.68 1.88 -11.54 -0.02 0.66 15 8 H 0.02 1.04 7.20 -2.38 -0.02 1.02 15 9 C -0.15 -6.03 8.49 71.98 0.61 -5.42 15 10 C -0.51 -27.08 9.14 25.60 0.23 -26.84 15 11 H 0.06 3.12 7.99 -2.91 -0.02 3.09 15 12 C 0.02 1.20 5.45 84.66 0.46 1.66 15 13 N -0.94 -56.64 13.96 21.45 0.30 -56.34 15 14 Si 0.94 44.20 24.37 68.60 1.67 45.87 15 15 H -0.27 -11.91 6.87 99.48 0.68 -11.23 15 16 H -0.30 -14.11 7.11 99.48 0.71 -13.40 15 17 H -0.26 -11.69 6.53 99.48 0.65 -11.04 15 18 N -0.51 -17.99 11.55 -303.19 -3.50 -21.50 15 19 H 0.10 1.64 8.14 -2.39 -0.02 1.62 15 20 H 0.10 1.68 8.14 -2.39 -0.02 1.66 15 21 H 0.10 1.55 8.14 -2.39 -0.02 1.53 15 22 H 0.12 3.60 8.14 -2.39 -0.02 3.58 15 23 H 0.11 3.81 8.14 -2.39 -0.02 3.79 15 24 H 0.04 1.54 6.93 -2.39 -0.02 1.53 15 25 H 0.07 2.65 8.14 -2.38 -0.02 2.63 15 26 H 0.03 1.32 3.27 -2.39 -0.01 1.32 15 27 H 0.27 15.11 8.31 -92.71 -0.77 14.34 15 Total: -1.00 -63.19 231.71 3.57 -59.62 By element: Atomic # 1 Polarization: -0.64 SS G_CDS: 1.09 Total: 0.45 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: 3.94 Total: -16.52 kcal Atomic # 7 Polarization: -88.37 SS G_CDS: -3.94 Total: -92.31 kcal Atomic # 8 Polarization: 2.09 SS G_CDS: 0.80 Total: 2.89 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.67 Total: 45.87 kcal Total: -63.19 3.57 -59.62 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235088018.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.453 kcal (2) G-P(sol) polarization free energy of solvation -63.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds