Wall clock time and date at job start Mon Mar 30 2020 02:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.27570 * 126.41461 * 2 1 4 4 N 1.39155 * 113.16148 * 179.97438 * 3 2 1 5 5 C 1.46495 * 124.43632 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.47340 * 180.02562 * 5 4 3 7 7 C 1.52994 * 109.47714 * 300.03018 * 5 4 3 8 8 C 1.50703 * 109.47277 * 60.02906 * 5 4 3 9 9 H 1.08005 * 119.99946 * 0.02562 * 8 5 4 10 10 C 1.37870 * 120.00456 * 179.97438 * 8 5 4 11 11 N 1.31515 * 119.99804 * 0.02562 * 10 8 5 12 12 Si 1.86800 * 120.00226 * 180.02562 * 10 8 5 13 13 H 1.48501 * 109.47295 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47454 * 120.00034 * 12 10 8 15 15 H 1.48508 * 109.46966 * 240.00191 * 12 10 8 16 16 C 1.34954 * 111.12213 * 0.02562 * 4 3 2 17 17 O 1.21298 * 127.49594 * 180.02562 * 16 4 3 18 18 C 1.51438 * 126.41860 * 179.97438 * 2 1 3 19 19 H 1.09003 * 109.47110 * 0.02584 * 1 2 3 20 20 H 1.08999 * 109.47130 * 120.02017 * 1 2 3 21 21 H 1.08990 * 109.47290 * 240.02400 * 1 2 3 22 22 H 1.09004 * 109.47525 * 59.99744 * 7 5 4 23 23 H 1.09003 * 109.47661 * 180.02562 * 7 5 4 24 24 H 1.09004 * 109.47122 * 299.99980 * 7 5 4 25 25 H 0.97002 * 119.99720 * 179.97438 * 11 10 8 26 26 H 1.09004 * 110.60839 * 61.52830 * 18 2 1 27 27 H 1.09006 * 110.60340 * 298.56603 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2643 1.0266 0.0000 4 7 3.6188 0.7076 0.0006 5 6 4.7021 1.6937 0.0002 6 1 5.6626 1.1784 0.0003 7 6 4.5937 2.5700 -1.2492 8 6 4.5955 2.5577 1.2304 9 1 3.8005 2.3887 1.9417 10 6 5.5134 3.5630 1.4485 11 7 6.4818 3.7684 0.5826 12 14 5.3816 4.6334 2.9737 13 1 4.2130 4.2018 3.7819 14 1 6.6201 4.4982 3.7819 15 1 5.2066 6.0516 2.5695 16 6 3.8035 -0.6292 0.0004 17 8 4.8579 -1.2289 0.0012 18 6 2.4060 -1.2186 0.0005 19 1 -0.3633 1.0277 -0.0005 20 1 -0.3633 -0.5141 -0.8898 21 1 -0.3633 -0.5134 0.8901 22 1 3.6333 3.0855 -1.2494 23 1 5.4001 3.3035 -1.2498 24 1 4.6709 1.9452 -2.1391 25 1 7.1274 4.4760 0.7359 26 1 2.2424 -1.8165 -0.8961 27 1 2.2412 -1.8165 0.8969 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238386996.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:39 Heat of formation + Delta-G solvation = 12.665585 kcal Electronic energy + Delta-G solvation = -12392.889770 eV Core-core repulsion = 10152.142068 eV Total energy + Delta-G solvation = -2240.747702 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.44904 -36.76638 -34.64201 -32.19350 -29.89993 -28.66032 -27.08132 -25.23043 -21.50336 -20.57298 -18.59295 -16.61409 -15.79543 -15.54258 -14.74481 -14.42071 -13.90996 -13.36456 -12.98301 -12.67838 -12.28490 -12.16458 -11.81489 -11.40383 -11.14037 -10.86739 -10.62534 -10.42039 -10.23656 -10.00142 -9.24920 -8.99459 -8.49716 -7.72944 -6.11487 -4.18300 2.14476 3.26531 3.28342 3.34377 3.38683 3.42312 4.33251 4.39799 4.56104 5.19658 5.26276 5.45347 5.59917 5.68188 5.75564 6.15408 6.49358 6.74015 6.88244 6.95628 7.19578 7.55045 7.71306 7.93917 8.10378 8.53169 8.63650 8.88781 9.47053 10.94459 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.040638 B = 0.011491 C = 0.010388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.844236 B = 2436.055496 C = 2694.676790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.038 3.962 3 N -0.202 5.202 4 N -0.435 5.435 5 C 0.282 3.718 6 H 0.065 0.935 7 C -0.145 4.145 8 C -0.519 4.519 9 H 0.063 0.937 10 C 0.063 3.937 11 N -0.891 5.891 12 Si 0.905 3.095 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.282 1.282 16 C 0.485 3.515 17 O -0.518 6.518 18 C -0.173 4.173 19 H 0.078 0.922 20 H 0.078 0.922 21 H 0.078 0.922 22 H 0.041 0.959 23 H 0.097 0.903 24 H 0.010 0.990 25 H 0.264 0.736 26 H 0.121 0.879 27 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.625 -5.809 -1.440 12.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.155 4.155 3 N -0.010 5.010 4 N -0.254 5.254 5 C 0.184 3.816 6 H 0.082 0.918 7 C -0.204 4.204 8 C -0.557 4.557 9 H 0.081 0.919 10 C -0.139 4.139 11 N -0.530 5.530 12 Si 0.732 3.268 13 H -0.198 1.198 14 H -0.209 1.209 15 H -0.208 1.208 16 C 0.272 3.728 17 O -0.394 6.394 18 C -0.215 4.215 19 H 0.097 0.903 20 H 0.096 0.904 21 H 0.097 0.903 22 H 0.060 0.940 23 H 0.116 0.884 24 H 0.029 0.971 25 H 0.074 0.926 26 H 0.139 0.861 27 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.618 -4.899 -1.471 10.893 hybrid contribution 0.118 -0.200 0.801 0.834 sum -9.500 -5.099 -0.670 10.803 Atomic orbital electron populations 1.20164 0.85714 1.03941 1.02748 1.25116 0.97107 0.90818 1.02479 1.74581 0.90665 1.26788 1.08973 1.50611 1.02607 1.06656 1.65570 1.19131 0.81790 0.85075 0.95634 0.91759 1.22060 1.02864 1.00636 0.94810 1.21288 1.13008 1.15586 1.05853 0.91866 1.24900 0.94868 0.97074 0.97089 1.69879 1.15345 1.32380 1.35382 0.86330 0.78009 0.79985 0.82456 1.19753 1.20870 1.20759 1.21316 0.90737 0.83898 0.76897 1.90707 1.31172 1.66570 1.50919 1.22072 0.94067 0.99349 1.06008 0.90278 0.90379 0.90329 0.94026 0.88430 0.97118 0.92579 0.86120 0.86052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.66 10.50 36.00 0.38 -0.28 15 2 C 0.04 0.58 7.59 -78.73 -0.60 -0.01 15 3 N -0.20 -4.18 11.77 35.53 0.42 -3.76 15 4 N -0.44 -10.34 3.23 -54.54 -0.18 -10.52 15 5 C 0.28 7.60 2.98 -69.09 -0.21 7.40 15 6 H 0.06 1.92 7.68 -51.93 -0.40 1.52 15 7 C -0.15 -3.68 9.18 37.15 0.34 -3.34 15 8 C -0.52 -14.77 8.72 -34.44 -0.30 -15.07 15 9 H 0.06 1.83 7.81 -52.48 -0.41 1.42 15 10 C 0.06 1.76 5.30 -17.82 -0.09 1.66 15 11 N -0.89 -25.52 11.32 55.43 0.63 -24.89 15 12 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 15 13 H -0.27 -6.50 7.11 56.52 0.40 -6.09 15 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 16 C 0.48 10.67 8.43 -10.43 -0.09 10.58 15 17 O -0.52 -12.98 17.57 5.54 0.10 -12.88 15 18 C -0.17 -2.62 6.93 -28.20 -0.20 -2.82 15 19 H 0.08 0.80 8.14 -51.93 -0.42 0.38 15 20 H 0.08 0.58 8.14 -51.93 -0.42 0.16 15 21 H 0.08 0.62 8.14 -51.93 -0.42 0.19 15 22 H 0.04 1.03 8.14 -51.93 -0.42 0.60 15 23 H 0.10 2.63 6.07 -51.93 -0.32 2.31 15 24 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 15 25 H 0.26 7.13 8.31 -40.82 -0.34 6.79 15 26 H 0.12 1.49 8.14 -51.93 -0.42 1.06 15 27 H 0.12 1.55 8.14 -51.93 -0.42 1.13 15 LS Contribution 241.25 15.07 3.64 3.64 Total: -1.00 -32.51 241.25 -4.40 -36.90 By element: Atomic # 1 Polarization: 0.01 SS G_CDS: -3.22 Total: -3.21 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -0.76 Total: -1.89 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 0.87 Total: -39.18 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.10 Total: -12.88 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -32.51 -4.40 -36.90 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238386996.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.570 kcal (2) G-P(sol) polarization free energy of solvation -32.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds