Wall clock time and date at job start Mon Mar 30 2020 02:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.27570 * 126.41461 * 2 1 4 4 N 1.39155 * 113.16148 * 179.97438 * 3 2 1 5 5 C 1.46495 * 124.43632 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.47340 * 180.02562 * 5 4 3 7 7 C 1.52994 * 109.47714 * 300.03018 * 5 4 3 8 8 C 1.50703 * 109.47277 * 60.02906 * 5 4 3 9 9 H 1.08005 * 119.99946 * 0.02562 * 8 5 4 10 10 C 1.37870 * 120.00456 * 179.97438 * 8 5 4 11 11 N 1.31515 * 119.99804 * 0.02562 * 10 8 5 12 12 Si 1.86800 * 120.00226 * 180.02562 * 10 8 5 13 13 H 1.48501 * 109.47295 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47454 * 120.00034 * 12 10 8 15 15 H 1.48508 * 109.46966 * 240.00191 * 12 10 8 16 16 C 1.34954 * 111.12213 * 0.02562 * 4 3 2 17 17 O 1.21298 * 127.49594 * 180.02562 * 16 4 3 18 18 C 1.51438 * 126.41860 * 179.97438 * 2 1 3 19 19 H 1.09003 * 109.47110 * 0.02584 * 1 2 3 20 20 H 1.08999 * 109.47130 * 120.02017 * 1 2 3 21 21 H 1.08990 * 109.47290 * 240.02400 * 1 2 3 22 22 H 1.09004 * 109.47525 * 59.99744 * 7 5 4 23 23 H 1.09003 * 109.47661 * 180.02562 * 7 5 4 24 24 H 1.09004 * 109.47122 * 299.99980 * 7 5 4 25 25 H 0.97002 * 119.99720 * 179.97438 * 11 10 8 26 26 H 1.09004 * 110.60839 * 61.52830 * 18 2 1 27 27 H 1.09006 * 110.60340 * 298.56603 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2643 1.0266 0.0000 4 7 3.6188 0.7076 0.0006 5 6 4.7021 1.6937 0.0002 6 1 5.6626 1.1784 0.0003 7 6 4.5937 2.5700 -1.2492 8 6 4.5955 2.5577 1.2304 9 1 3.8005 2.3887 1.9417 10 6 5.5134 3.5630 1.4485 11 7 6.4818 3.7684 0.5826 12 14 5.3816 4.6334 2.9737 13 1 4.2130 4.2018 3.7819 14 1 6.6201 4.4982 3.7819 15 1 5.2066 6.0516 2.5695 16 6 3.8035 -0.6292 0.0004 17 8 4.8579 -1.2289 0.0012 18 6 2.4060 -1.2186 0.0005 19 1 -0.3633 1.0277 -0.0005 20 1 -0.3633 -0.5141 -0.8898 21 1 -0.3633 -0.5134 0.8901 22 1 3.6333 3.0855 -1.2494 23 1 5.4001 3.3035 -1.2498 24 1 4.6709 1.9452 -2.1391 25 1 7.1274 4.4760 0.7359 26 1 2.2424 -1.8165 -0.8961 27 1 2.2412 -1.8165 0.8969 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238386996.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:39 Heat of formation + Delta-G solvation = -10.657389 kcal Electronic energy + Delta-G solvation = -12393.901130 eV Core-core repulsion = 10152.142068 eV Total energy + Delta-G solvation = -2241.759062 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.99472 -38.42842 -36.58095 -33.99316 -31.51845 -30.08126 -28.45469 -27.39246 -23.38762 -22.06908 -20.19761 -18.58573 -17.66556 -17.10476 -16.45610 -16.05069 -15.55679 -14.80859 -14.50646 -14.20103 -13.91088 -13.37541 -13.17833 -13.05678 -13.03356 -12.82445 -12.38341 -12.30785 -12.18605 -11.62440 -11.27060 -10.65781 -10.59323 -9.44034 -8.24269 -6.40667 0.79523 1.37438 1.37911 1.50536 1.73074 1.81211 2.36816 2.99196 3.07487 3.28679 4.03481 4.38585 4.54510 4.64235 4.76977 4.85763 4.86253 4.99860 5.12336 5.23821 5.45194 5.57351 5.69433 5.85889 6.04032 6.61181 6.86748 7.13640 7.30290 8.81209 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.040638 B = 0.011491 C = 0.010388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.844236 B = 2436.055496 C = 2694.676790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.085 3.915 3 N -0.267 5.267 4 N -0.457 5.457 5 C 0.284 3.716 6 H 0.018 0.982 7 C -0.126 4.126 8 C -0.537 4.537 9 H 0.052 0.948 10 C 0.016 3.984 11 N -0.917 5.917 12 Si 0.973 3.027 13 H -0.271 1.271 14 H -0.277 1.277 15 H -0.270 1.270 16 C 0.459 3.541 17 O -0.570 6.570 18 C -0.157 4.157 19 H 0.076 0.924 20 H 0.115 0.885 21 H 0.112 0.888 22 H 0.042 0.958 23 H 0.077 0.923 24 H 0.020 0.980 25 H 0.269 0.731 26 H 0.163 0.837 27 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.435 -6.479 -0.919 14.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.108 4.108 3 N -0.075 5.075 4 N -0.274 5.274 5 C 0.184 3.816 6 H 0.036 0.964 7 C -0.185 4.185 8 C -0.576 4.576 9 H 0.070 0.930 10 C -0.184 4.184 11 N -0.555 5.555 12 Si 0.797 3.203 13 H -0.195 1.195 14 H -0.202 1.202 15 H -0.195 1.195 16 C 0.248 3.752 17 O -0.450 6.450 18 C -0.198 4.198 19 H 0.095 0.905 20 H 0.134 0.866 21 H 0.130 0.870 22 H 0.061 0.939 23 H 0.096 0.904 24 H 0.039 0.961 25 H 0.078 0.922 26 H 0.180 0.820 27 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -12.470 -5.565 -0.961 13.689 hybrid contribution 0.853 -0.100 0.608 1.053 sum -11.617 -5.665 -0.352 12.930 Atomic orbital electron populations 1.20533 0.81015 1.04947 1.06050 1.26297 0.99202 0.89580 0.95685 1.74680 0.89014 1.28859 1.14918 1.50450 1.03836 1.06697 1.66387 1.18651 0.81761 0.85340 0.95848 0.96411 1.21812 1.01921 0.99992 0.94772 1.21421 1.13133 1.16526 1.06474 0.93009 1.25770 0.94283 0.98196 1.00158 1.69993 1.15778 1.32849 1.36915 0.85285 0.78041 0.78394 0.78559 1.19524 1.20238 1.19499 1.22498 0.93039 0.83669 0.75976 1.90657 1.33651 1.67277 1.53417 1.22178 0.88755 0.99395 1.09461 0.90545 0.86632 0.87010 0.93903 0.90429 0.96104 0.92165 0.82014 0.82523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.95 10.50 71.24 0.75 -0.20 15 2 C 0.08 2.30 7.59 46.83 0.36 2.66 15 3 N -0.27 -10.82 11.77 -40.85 -0.48 -11.30 15 4 N -0.46 -22.17 3.23 -444.74 -1.44 -23.61 15 5 C 0.28 16.10 2.98 44.25 0.13 16.23 15 6 H 0.02 1.16 7.68 -2.39 -0.02 1.14 15 7 C -0.13 -6.67 9.18 71.98 0.66 -6.01 15 8 C -0.54 -31.63 8.72 25.60 0.22 -31.41 15 9 H 0.05 3.08 7.81 -2.91 -0.02 3.06 15 10 C 0.02 0.89 5.30 84.65 0.45 1.34 15 11 N -0.92 -53.96 11.32 21.44 0.24 -53.71 15 12 Si 0.97 44.80 29.54 68.60 2.03 46.83 15 13 H -0.27 -12.26 7.11 99.48 0.71 -11.55 15 14 H -0.28 -12.41 7.11 99.48 0.71 -11.71 15 15 H -0.27 -11.85 7.11 99.48 0.71 -11.14 15 16 C 0.46 20.34 8.43 87.94 0.74 21.08 15 17 O -0.57 -29.70 17.57 -3.09 -0.05 -29.76 15 18 C -0.16 -4.19 6.93 29.65 0.21 -3.99 15 19 H 0.08 1.22 8.14 -2.39 -0.02 1.20 15 20 H 0.12 0.94 8.14 -2.39 -0.02 0.92 15 21 H 0.11 1.01 8.14 -2.39 -0.02 0.99 15 22 H 0.04 2.18 8.14 -2.39 -0.02 2.16 15 23 H 0.08 4.36 6.07 -2.39 -0.01 4.35 15 24 H 0.02 0.99 8.14 -2.39 -0.02 0.97 15 25 H 0.27 14.77 8.31 -92.71 -0.77 14.00 15 26 H 0.16 3.14 8.14 -2.39 -0.02 3.12 15 27 H 0.16 3.24 8.14 -2.38 -0.02 3.22 15 Total: -1.00 -76.09 241.25 4.97 -71.12 By element: Atomic # 1 Polarization: -0.44 SS G_CDS: 1.16 Total: 0.72 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: 3.52 Total: -0.30 kcal Atomic # 7 Polarization: -86.94 SS G_CDS: -1.67 Total: -88.62 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -0.05 Total: -29.76 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -76.09 4.97 -71.12 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238386996.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.463 kcal (2) G-P(sol) polarization free energy of solvation -76.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds