Wall clock time and date at job start Mon Mar 30 2020 02:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35865 * 117.00189 * 2 1 4 4 C 1.35381 * 125.92679 * 179.71345 * 3 2 1 5 5 C 1.41014 * 107.42400 * 179.90912 * 4 3 2 6 6 C 1.50698 * 126.25015 * 180.13847 * 5 4 3 7 7 H 1.08995 * 109.47541 * 20.28726 * 6 5 4 8 8 N 1.46899 * 109.46834 * 140.28325 * 6 5 4 9 9 C 1.50699 * 109.47470 * 260.28056 * 6 5 4 10 10 H 1.08007 * 119.99524 * 0.02562 * 9 6 5 11 11 C 1.37877 * 120.00216 * 180.02562 * 9 6 5 12 12 N 1.31512 * 120.00171 * 359.97438 * 11 9 6 13 13 Si 1.86802 * 120.00021 * 180.02562 * 11 9 6 14 14 H 1.48498 * 109.47341 * 59.99594 * 13 11 9 15 15 H 1.48499 * 109.47055 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.46684 * 299.99899 * 13 11 9 17 17 C 1.34741 * 107.49472 * 0.35731 * 5 4 3 18 18 N 1.36411 * 125.92713 * 0.02595 * 3 2 1 19 19 H 0.96992 * 125.66263 * 359.92911 * 18 3 2 20 20 H 1.08999 * 109.47054 * 59.99721 * 1 2 3 21 21 H 1.09005 * 109.47515 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47255 * 299.99811 * 1 2 3 23 23 H 1.08003 * 126.29094 * 0.04099 * 4 3 2 24 24 H 1.00899 * 111.00406 * 296.04825 * 8 6 5 25 25 H 1.00898 * 111.00161 * 60.00021 * 8 6 5 26 26 H 0.96991 * 120.00272 * 180.02562 * 12 11 9 27 27 H 1.07997 * 125.86933 * 179.78070 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0458 1.2105 0.0000 4 6 3.3832 1.4206 0.0055 5 6 3.5916 2.8152 0.0011 6 6 4.9253 3.5169 0.0018 7 1 5.6965 2.8319 -0.3504 8 7 4.8645 4.6846 -0.8875 9 6 5.2550 3.9680 1.4013 10 1 4.5676 3.7663 2.2097 11 6 6.4340 4.6381 1.6499 12 7 7.2712 4.8833 0.6658 13 14 6.8430 5.1966 3.3850 14 1 6.9051 4.0159 4.2834 15 1 8.1571 5.8882 3.3855 16 1 5.7919 6.1294 3.8653 17 6 2.3805 3.4058 0.0012 18 7 1.4250 2.4252 0.0005 19 1 0.4659 2.5701 -0.0001 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 4.1497 0.6598 0.0100 24 1 4.7086 4.4032 -1.8438 25 1 4.1565 5.3353 -0.5820 26 1 8.1007 5.3544 0.8407 27 1 2.1953 4.4698 0.0017 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238416125.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:39 Heat of formation + Delta-G solvation = 16.609059 kcal Electronic energy + Delta-G solvation = -12131.979691 eV Core-core repulsion = 9891.402991 eV Total energy + Delta-G solvation = -2240.576700 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.74366 -37.61428 -34.28828 -31.41635 -30.03483 -28.05669 -26.10689 -25.68965 -22.19025 -20.18985 -19.05130 -17.89674 -16.21038 -15.73326 -15.11493 -14.72652 -14.36245 -13.75952 -13.25200 -12.99177 -12.25191 -12.04947 -11.87225 -11.62965 -11.03738 -10.84378 -10.61475 -10.49529 -9.77128 -9.08025 -8.27347 -7.88401 -7.08617 -6.80068 -5.71028 -3.83745 2.87146 3.36428 3.44704 3.48937 3.51259 3.73200 3.82672 4.63318 4.93177 5.00558 5.30317 5.53392 5.84208 6.11473 6.31600 6.51814 6.59103 6.96537 7.19141 7.51125 7.83144 7.90767 8.08176 8.27449 8.45128 8.85008 9.21336 9.35175 9.83427 11.33427 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.057589 B = 0.008897 C = 0.008381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.088387 B = 3146.226674 C = 3340.055146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.301 6.301 3 C 0.184 3.816 4 C -0.205 4.205 5 C -0.119 4.119 6 C 0.280 3.720 7 H 0.043 0.957 8 N -0.809 5.809 9 C -0.522 4.522 10 H 0.051 0.949 11 C 0.081 3.919 12 N -0.851 5.851 13 Si 0.882 3.118 14 H -0.279 1.279 15 H -0.289 1.289 16 H -0.280 1.280 17 C -0.048 4.048 18 N -0.594 5.594 19 H 0.400 0.600 20 H 0.047 0.953 21 H 0.100 0.900 22 H 0.047 0.953 23 H 0.135 0.865 24 H 0.296 0.704 25 H 0.313 0.687 26 H 0.254 0.746 27 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.796 -5.201 -2.021 13.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.211 6.211 3 C 0.032 3.968 4 C -0.232 4.232 5 C -0.128 4.128 6 C 0.170 3.830 7 H 0.061 0.939 8 N -0.334 5.334 9 C -0.561 4.561 10 H 0.069 0.931 11 C -0.125 4.125 12 N -0.486 5.486 13 Si 0.710 3.290 14 H -0.205 1.205 15 H -0.215 1.215 16 H -0.206 1.206 17 C -0.173 4.173 18 N -0.204 5.204 19 H 0.236 0.764 20 H 0.065 0.935 21 H 0.118 0.882 22 H 0.066 0.934 23 H 0.153 0.847 24 H 0.106 0.894 25 H 0.125 0.875 26 H 0.064 0.936 27 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -11.848 -5.181 -1.853 13.064 hybrid contribution -1.626 0.165 0.885 1.858 sum -13.474 -5.017 -0.969 14.411 Atomic orbital electron populations 1.22876 0.79763 1.04002 1.00492 1.86259 1.20032 1.23439 1.91408 1.18936 0.90746 0.77150 1.09967 1.20139 0.90380 0.96927 1.15731 1.21291 0.97781 0.92374 1.01329 1.17603 0.85376 0.87103 0.92905 0.93880 1.59251 1.54183 1.17152 1.02766 1.20864 1.04393 1.38631 0.92204 0.93095 1.24957 0.96224 0.95521 0.95775 1.70096 1.09383 1.38992 1.30174 0.86869 0.77329 0.78780 0.86044 1.20498 1.21506 1.20563 1.21300 0.87306 0.92656 1.16063 1.42161 1.08201 1.05578 1.64449 0.76436 0.93474 0.88188 0.93401 0.84707 0.89362 0.87544 0.93624 0.82413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.29 101.05 1.04 1.29 15 2 O -0.30 -4.79 10.57 -19.31 -0.20 -4.99 15 3 C 0.18 3.36 7.77 -16.53 -0.13 3.23 15 4 C -0.21 -4.36 10.83 -39.55 -0.43 -4.78 15 5 C -0.12 -2.66 5.07 -104.81 -0.53 -3.19 15 6 C 0.28 7.23 3.08 -70.02 -0.22 7.02 15 7 H 0.04 1.23 8.14 -51.93 -0.42 0.81 15 8 N -0.81 -19.42 8.43 -6.65 -0.06 -19.48 15 9 C -0.52 -14.82 8.71 -34.44 -0.30 -15.12 15 10 H 0.05 1.46 7.74 -52.48 -0.41 1.06 15 11 C 0.08 2.32 5.39 -17.82 -0.10 2.23 15 12 N -0.85 -25.43 12.77 55.43 0.71 -24.72 15 13 Si 0.88 21.89 29.54 -169.99 -5.02 16.87 15 14 H -0.28 -6.89 7.11 56.52 0.40 -6.49 15 15 H -0.29 -7.12 7.11 56.52 0.40 -6.72 15 16 H -0.28 -6.87 7.11 56.52 0.40 -6.47 15 17 C -0.05 -0.92 11.31 -16.52 -0.19 -1.10 15 18 N -0.59 -9.56 5.86 -12.87 -0.08 -9.64 15 19 H 0.40 4.83 8.29 -40.82 -0.34 4.49 15 20 H 0.05 0.42 8.14 -51.93 -0.42 0.00 15 21 H 0.10 0.78 8.14 -51.93 -0.42 0.36 15 22 H 0.05 0.45 8.14 -51.93 -0.42 0.02 15 23 H 0.14 2.80 8.06 -52.48 -0.42 2.38 15 24 H 0.30 6.43 9.06 -39.29 -0.36 6.07 15 25 H 0.31 7.07 8.14 -39.29 -0.32 6.75 15 26 H 0.25 7.27 8.31 -40.82 -0.34 6.93 15 27 H 0.16 2.72 7.59 -52.49 -0.40 2.32 15 LS Contribution 240.70 15.07 3.63 3.63 Total: -1.00 -32.30 240.70 -4.94 -37.23 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -3.07 Total: 11.52 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: -0.85 Total: -10.43 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: 0.58 Total: -53.83 kcal Atomic # 8 Polarization: -4.79 SS G_CDS: -0.20 Total: -4.99 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -32.30 -4.94 -37.23 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238416125.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.843 kcal (2) G-P(sol) polarization free energy of solvation -32.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds