Wall clock time and date at job start Mon Mar 30 2020 02:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35865 * 116.99662 * 2 1 4 4 C 1.35388 * 125.92505 * 179.71237 * 3 2 1 5 5 C 1.41007 * 107.42417 * 179.85008 * 4 3 2 6 6 C 1.50706 * 126.25168 * 180.16175 * 5 4 3 7 7 H 1.08994 * 109.46755 * 340.27374 * 6 5 4 8 8 N 1.46899 * 109.47019 * 220.27664 * 6 5 4 9 9 C 1.50697 * 109.47107 * 100.27804 * 6 5 4 10 10 H 1.08004 * 119.99885 * 0.02562 * 9 6 5 11 11 C 1.37874 * 119.99983 * 179.97438 * 9 6 5 12 12 N 1.31509 * 120.00099 * 359.97438 * 11 9 6 13 13 Si 1.86805 * 119.99940 * 179.97438 * 11 9 6 14 14 H 1.48495 * 109.46963 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.46832 * 119.99987 * 13 11 9 16 16 H 1.48495 * 109.47215 * 239.99953 * 13 11 9 17 17 C 1.34747 * 107.49534 * 0.41743 * 5 4 3 18 18 N 1.36406 * 125.93234 * 0.02732 * 3 2 1 19 19 H 0.97003 * 125.65774 * 0.02562 * 18 3 2 20 20 H 1.08993 * 109.47230 * 299.99856 * 1 2 3 21 21 H 1.08995 * 109.47007 * 60.00313 * 1 2 3 22 22 H 1.09007 * 109.46630 * 179.97438 * 1 2 3 23 23 H 1.07999 * 126.28944 * 359.97438 * 4 3 2 24 24 H 1.00902 * 111.00086 * 176.04267 * 8 6 5 25 25 H 1.00896 * 111.00510 * 300.00247 * 8 6 5 26 26 H 0.97004 * 120.00226 * 179.97438 * 12 11 9 27 27 H 1.07998 * 125.86569 * 179.74430 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2106 0.0000 4 6 3.3832 1.4207 0.0055 5 6 3.5915 2.8153 -0.0003 6 6 4.9252 3.5171 -0.0006 7 1 5.6964 2.8318 0.3509 8 7 4.8646 4.6842 0.8895 9 6 5.2546 3.9692 -1.3999 10 1 4.5668 3.7687 -2.2081 11 6 6.4335 4.6396 -1.6483 12 7 7.2703 4.8850 -0.6639 13 14 6.8421 5.1993 -3.3830 14 1 5.7446 4.8043 -4.3020 15 1 6.9965 6.6761 -3.4031 16 1 8.1098 4.5631 -3.8227 17 6 2.3804 3.4058 0.0003 18 7 1.4250 2.4252 0.0005 19 1 0.4658 2.5700 0.0013 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0278 -0.0005 23 1 4.1498 0.6600 0.0111 24 1 5.7649 5.1348 0.9568 25 1 4.1564 5.3351 0.5847 26 1 8.0999 5.3564 -0.8386 27 1 2.1952 4.4698 0.0006 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238423919.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:41 Heat of formation + Delta-G solvation = 8.860414 kcal Electronic energy + Delta-G solvation = -12137.685894 eV Core-core repulsion = 9896.773188 eV Total energy + Delta-G solvation = -2240.912706 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.63610 -37.52172 -34.46046 -31.37221 -29.93208 -28.03459 -26.05258 -25.67091 -22.30083 -20.11502 -18.95523 -17.80972 -16.30166 -15.66529 -15.01647 -14.82528 -14.46986 -13.49270 -13.23171 -12.81682 -12.58479 -11.95415 -11.79896 -11.26776 -11.01191 -10.89917 -10.69241 -10.52515 -9.87386 -9.56790 -8.52863 -7.88166 -7.05056 -6.83932 -5.93119 -4.08993 2.99058 3.29109 3.37542 3.42525 3.44703 3.82545 3.94989 4.46685 4.99776 5.06882 5.27725 5.35952 5.97496 6.22034 6.42127 6.56746 6.78628 7.09324 7.33747 7.56523 7.89521 7.94619 8.05466 8.32849 8.41894 8.86874 9.12406 9.29247 9.62220 11.03224 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.058069 B = 0.008879 C = 0.008375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.070490 B = 3152.666728 C = 3342.295804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.301 6.301 3 C 0.182 3.818 4 C -0.206 4.206 5 C -0.075 4.075 6 C 0.268 3.732 7 H 0.044 0.956 8 N -0.849 5.849 9 C -0.533 4.533 10 H 0.055 0.945 11 C 0.062 3.938 12 N -0.897 5.897 13 Si 0.894 3.106 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.284 1.284 17 C -0.038 4.038 18 N -0.595 5.595 19 H 0.400 0.600 20 H 0.047 0.953 21 H 0.047 0.953 22 H 0.099 0.901 23 H 0.134 0.866 24 H 0.353 0.647 25 H 0.308 0.692 26 H 0.262 0.738 27 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.721 -4.267 0.822 12.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.212 6.212 3 C 0.030 3.970 4 C -0.233 4.233 5 C -0.082 4.082 6 C 0.157 3.843 7 H 0.062 0.938 8 N -0.377 5.377 9 C -0.573 4.573 10 H 0.073 0.927 11 C -0.139 4.139 12 N -0.537 5.537 13 Si 0.722 3.278 14 H -0.199 1.199 15 H -0.212 1.212 16 H -0.210 1.210 17 C -0.163 4.163 18 N -0.205 5.205 19 H 0.235 0.765 20 H 0.066 0.934 21 H 0.065 0.935 22 H 0.117 0.883 23 H 0.152 0.848 24 H 0.169 0.831 25 H 0.116 0.884 26 H 0.072 0.928 27 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -11.741 -4.933 1.442 12.816 hybrid contribution -0.214 1.017 -1.945 2.205 sum -11.955 -3.916 -0.502 12.590 Atomic orbital electron populations 1.22865 0.79836 1.03907 1.00493 1.86249 1.19967 1.23489 1.91478 1.18825 0.90652 0.77154 1.10355 1.20041 0.90437 0.96754 1.16049 1.19857 0.95722 0.91600 1.01006 1.17404 0.87323 0.89255 0.90299 0.93850 1.59481 1.12113 1.12106 1.54050 1.21973 1.04193 1.35851 0.95268 0.92691 1.25032 0.95869 0.95954 0.97082 1.69761 1.10926 1.41990 1.31038 0.86515 0.78283 0.78104 0.84924 1.19880 1.21170 1.20989 1.21270 0.87147 0.92571 1.15284 1.42156 1.08187 1.05576 1.64572 0.76477 0.93440 0.93458 0.88279 0.84833 0.83138 0.88396 0.92758 0.82353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.29 101.05 1.04 1.31 15 2 O -0.30 -4.91 10.57 -19.31 -0.20 -5.12 15 3 C 0.18 3.42 7.77 -16.53 -0.13 3.29 15 4 C -0.21 -4.51 10.83 -39.55 -0.43 -4.94 15 5 C -0.08 -1.75 5.08 -104.81 -0.53 -2.28 15 6 C 0.27 7.01 3.18 -70.02 -0.22 6.79 15 7 H 0.04 1.26 8.14 -51.93 -0.42 0.84 15 8 N -0.85 -20.91 9.09 -6.65 -0.06 -20.97 15 9 C -0.53 -14.85 8.71 -34.44 -0.30 -15.15 15 10 H 0.05 1.56 7.74 -52.48 -0.41 1.16 15 11 C 0.06 1.71 5.38 -17.82 -0.10 1.62 15 12 N -0.90 -25.38 11.53 55.43 0.64 -24.75 15 13 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 15 14 H -0.27 -6.58 7.11 56.52 0.40 -6.18 15 15 H -0.29 -6.77 7.11 56.52 0.40 -6.37 15 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 17 C -0.04 -0.75 11.31 -16.52 -0.19 -0.94 15 18 N -0.59 -9.93 5.86 -12.87 -0.08 -10.00 15 19 H 0.40 5.01 8.29 -40.82 -0.34 4.67 15 20 H 0.05 0.45 8.14 -51.93 -0.42 0.02 15 21 H 0.05 0.45 8.14 -51.93 -0.42 0.03 15 22 H 0.10 0.80 8.14 -51.92 -0.42 0.38 15 23 H 0.13 2.84 8.06 -52.49 -0.42 2.42 15 24 H 0.35 9.26 7.08 -39.29 -0.28 8.98 15 25 H 0.31 7.08 8.14 -39.29 -0.32 6.76 15 26 H 0.26 7.08 8.31 -40.82 -0.34 6.74 15 27 H 0.16 2.86 7.59 -52.49 -0.40 2.46 15 LS Contribution 238.23 15.07 3.59 3.59 Total: -1.00 -30.62 238.23 -4.98 -35.60 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -2.99 Total: 15.50 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: -0.85 Total: -10.29 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: 0.50 Total: -55.71 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: -0.20 Total: -5.12 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -30.62 -4.98 -35.60 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238423919.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.456 kcal (2) G-P(sol) polarization free energy of solvation -30.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds