Wall clock time and date at job start Mon Mar 30 2020 02:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35865 * 116.99662 * 2 1 4 4 C 1.35388 * 125.92505 * 179.71237 * 3 2 1 5 5 C 1.41007 * 107.42417 * 179.85008 * 4 3 2 6 6 C 1.50706 * 126.25168 * 180.16175 * 5 4 3 7 7 H 1.08994 * 109.46755 * 340.27374 * 6 5 4 8 8 N 1.46899 * 109.47019 * 220.27664 * 6 5 4 9 9 C 1.50697 * 109.47107 * 100.27804 * 6 5 4 10 10 H 1.08004 * 119.99885 * 0.02562 * 9 6 5 11 11 C 1.37874 * 119.99983 * 179.97438 * 9 6 5 12 12 N 1.31509 * 120.00099 * 359.97438 * 11 9 6 13 13 Si 1.86805 * 119.99940 * 179.97438 * 11 9 6 14 14 H 1.48495 * 109.46963 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.46832 * 119.99987 * 13 11 9 16 16 H 1.48495 * 109.47215 * 239.99953 * 13 11 9 17 17 C 1.34747 * 107.49534 * 0.41743 * 5 4 3 18 18 N 1.36406 * 125.93234 * 0.02732 * 3 2 1 19 19 H 0.97003 * 125.65774 * 0.02562 * 18 3 2 20 20 H 1.08993 * 109.47230 * 299.99856 * 1 2 3 21 21 H 1.08995 * 109.47007 * 60.00313 * 1 2 3 22 22 H 1.09007 * 109.46630 * 179.97438 * 1 2 3 23 23 H 1.07999 * 126.28944 * 359.97438 * 4 3 2 24 24 H 1.00902 * 111.00086 * 176.04267 * 8 6 5 25 25 H 1.00896 * 111.00510 * 300.00247 * 8 6 5 26 26 H 0.97004 * 120.00226 * 179.97438 * 12 11 9 27 27 H 1.07998 * 125.86569 * 179.74430 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2106 0.0000 4 6 3.3832 1.4207 0.0055 5 6 3.5915 2.8153 -0.0003 6 6 4.9252 3.5171 -0.0006 7 1 5.6964 2.8318 0.3509 8 7 4.8646 4.6842 0.8895 9 6 5.2546 3.9692 -1.3999 10 1 4.5668 3.7687 -2.2081 11 6 6.4335 4.6396 -1.6483 12 7 7.2703 4.8850 -0.6639 13 14 6.8421 5.1993 -3.3830 14 1 5.7446 4.8043 -4.3020 15 1 6.9965 6.6761 -3.4031 16 1 8.1098 4.5631 -3.8227 17 6 2.3804 3.4058 0.0003 18 7 1.4250 2.4252 0.0005 19 1 0.4658 2.5700 0.0013 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0278 -0.0005 23 1 4.1498 0.6600 0.0111 24 1 5.7649 5.1348 0.9568 25 1 4.1564 5.3351 0.5847 26 1 8.0999 5.3564 -0.8386 27 1 2.1952 4.4698 0.0006 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238423919.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:41 Heat of formation + Delta-G solvation = -15.288845 kcal Electronic energy + Delta-G solvation = -12138.733084 eV Core-core repulsion = 9896.773188 eV Total energy + Delta-G solvation = -2241.959897 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.12814 -38.83905 -36.43262 -33.37379 -31.53716 -29.40619 -27.79410 -27.22325 -24.22737 -21.60024 -20.37845 -19.48258 -18.41746 -16.84690 -16.60877 -16.38064 -16.09990 -15.28905 -14.84930 -14.35785 -14.28625 -13.68120 -13.18706 -12.88431 -12.78918 -12.64832 -12.40469 -12.05364 -11.81831 -11.58683 -10.64618 -9.53161 -9.05826 -8.41963 -8.00058 -6.27907 1.39457 1.41987 1.48005 1.54111 2.11487 2.22519 2.47435 2.61510 3.13400 4.22064 4.30385 4.54664 4.56563 4.63416 4.73367 4.90813 5.11568 5.29463 5.66368 5.75135 5.82208 6.17901 6.27792 6.45154 6.76450 7.04208 7.08337 7.24245 7.49389 8.91476 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.058069 B = 0.008879 C = 0.008375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.070490 B = 3152.666728 C = 3342.295804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.315 6.315 3 C 0.209 3.791 4 C -0.253 4.253 5 C -0.117 4.117 6 C 0.273 3.727 7 H -0.002 1.002 8 N -0.839 5.839 9 C -0.549 4.549 10 H 0.045 0.955 11 C 0.017 3.983 12 N -0.920 5.920 13 Si 0.960 3.040 14 H -0.273 1.273 15 H -0.276 1.276 16 H -0.282 1.282 17 C -0.023 4.023 18 N -0.570 5.570 19 H 0.425 0.575 20 H 0.064 0.936 21 H 0.062 0.938 22 H 0.127 0.873 23 H 0.120 0.880 24 H 0.342 0.658 25 H 0.318 0.682 26 H 0.266 0.734 27 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.859 -4.047 0.116 14.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.226 6.226 3 C 0.054 3.946 4 C -0.279 4.279 5 C -0.123 4.123 6 C 0.162 3.838 7 H 0.016 0.984 8 N -0.367 5.367 9 C -0.589 4.589 10 H 0.063 0.937 11 C -0.182 4.182 12 N -0.560 5.560 13 Si 0.786 3.214 14 H -0.198 1.198 15 H -0.201 1.201 16 H -0.208 1.208 17 C -0.150 4.150 18 N -0.182 5.182 19 H 0.265 0.735 20 H 0.083 0.917 21 H 0.080 0.920 22 H 0.146 0.854 23 H 0.139 0.861 24 H 0.157 0.843 25 H 0.128 0.872 26 H 0.075 0.925 27 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -13.938 -4.725 0.743 14.735 hybrid contribution 0.350 0.856 -1.685 1.922 sum -13.587 -3.869 -0.942 14.159 Atomic orbital electron populations 1.23332 0.76466 1.06473 1.02030 1.86259 1.23382 1.21900 1.91014 1.18589 0.90064 0.78475 1.07449 1.20022 0.92215 0.96308 1.19402 1.19643 0.95576 0.92512 1.04599 1.17139 0.88199 0.88944 0.89539 0.98376 1.59427 1.11722 1.11908 1.53664 1.22139 1.04546 1.36399 0.95797 0.93702 1.25777 0.95628 0.95909 1.00879 1.69867 1.11176 1.42178 1.32806 0.85483 0.77779 0.77933 0.80201 1.19779 1.20136 1.20814 1.21366 0.86576 0.93658 1.13389 1.41977 1.09158 1.04193 1.62875 0.73533 0.91728 0.91957 0.85446 0.86149 0.84349 0.87208 0.92488 0.80395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 10.29 113.37 1.17 1.37 15 2 O -0.31 -9.55 10.57 -92.03 -0.97 -10.52 15 3 C 0.21 7.52 7.77 83.32 0.65 8.17 15 4 C -0.25 -11.30 10.83 22.29 0.24 -11.06 15 5 C -0.12 -5.49 5.08 -19.98 -0.10 -5.59 15 6 C 0.27 14.76 3.18 43.42 0.14 14.90 15 7 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 15 8 N -0.84 -42.03 9.09 -174.96 -1.59 -43.62 15 9 C -0.55 -31.17 8.71 25.60 0.22 -30.95 15 10 H 0.04 2.58 7.74 -2.91 -0.02 2.56 15 11 C 0.02 0.96 5.38 84.65 0.46 1.42 15 12 N -0.92 -52.78 11.53 21.45 0.25 -52.54 15 13 Si 0.96 44.13 29.54 68.60 2.03 46.16 15 14 H -0.27 -12.41 7.11 99.48 0.71 -11.71 15 15 H -0.28 -12.19 7.11 99.48 0.71 -11.48 15 16 H -0.28 -12.83 7.11 99.48 0.71 -12.12 15 17 C -0.02 -0.89 11.31 83.10 0.94 0.05 15 18 N -0.57 -17.44 5.86 -305.19 -1.79 -19.23 15 19 H 0.42 8.88 8.29 -92.71 -0.77 8.11 15 20 H 0.06 0.94 8.14 -2.39 -0.02 0.92 15 21 H 0.06 0.93 8.14 -2.39 -0.02 0.91 15 22 H 0.13 1.53 8.14 -2.38 -0.02 1.51 15 23 H 0.12 5.46 8.06 -2.91 -0.02 5.43 15 24 H 0.34 18.37 7.08 -89.69 -0.63 17.73 15 25 H 0.32 14.59 8.14 -89.70 -0.73 13.86 15 26 H 0.27 14.40 8.31 -92.71 -0.77 13.63 15 27 H 0.18 5.98 7.59 -2.91 -0.02 5.96 15 Total: -1.00 -66.96 238.23 0.70 -66.25 By element: Atomic # 1 Polarization: 36.11 SS G_CDS: -0.93 Total: 35.18 kcal Atomic # 6 Polarization: -25.40 SS G_CDS: 3.71 Total: -21.69 kcal Atomic # 7 Polarization: -112.25 SS G_CDS: -3.13 Total: -115.39 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: -0.97 Total: -10.52 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -66.96 0.70 -66.25 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238423919.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.965 kcal (2) G-P(sol) polarization free energy of solvation -66.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds