Wall clock time and date at job start Mon Mar 30 2020 02:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36227 * 117.00080 * 2 1 4 4 C 1.41110 * 126.31608 * 359.96055 * 3 2 1 5 5 C 1.34884 * 107.49059 * 180.02562 * 4 3 2 6 6 N 1.36286 * 108.31912 * 359.75813 * 5 4 3 7 7 H 0.97005 * 125.64578 * 180.24559 * 6 5 4 8 8 C 1.35126 * 126.31592 * 179.97438 * 3 2 1 9 9 C 1.50700 * 125.94905 * 359.94222 * 8 3 2 10 10 H 1.09000 * 109.47078 * 325.00806 * 9 8 3 11 11 N 1.46898 * 109.47424 * 204.99734 * 9 8 3 12 12 C 1.50701 * 109.46655 * 85.00029 * 9 8 3 13 13 H 1.07999 * 120.00467 * 5.17196 * 12 9 8 14 14 C 1.37875 * 119.99908 * 185.17724 * 12 9 8 15 15 N 1.31519 * 120.00086 * 186.63767 * 14 12 9 16 16 Si 1.86806 * 120.00052 * 6.63778 * 14 12 9 17 17 H 1.48503 * 109.46936 * 270.00191 * 16 14 12 18 18 H 1.48503 * 109.46843 * 30.00041 * 16 14 12 19 19 H 1.48497 * 109.47273 * 150.00455 * 16 14 12 20 20 H 1.09000 * 109.47580 * 299.99795 * 1 2 3 21 21 H 1.09002 * 109.46890 * 60.00106 * 1 2 3 22 22 H 1.08998 * 109.47236 * 179.97438 * 1 2 3 23 23 H 1.07998 * 126.25558 * 0.02973 * 4 3 2 24 24 H 1.07992 * 125.83726 * 179.97438 * 5 4 3 25 25 H 1.00897 * 111.00041 * 173.88848 * 11 9 8 26 26 H 1.00900 * 111.00023 * 297.84978 * 11 9 8 27 27 H 0.96991 * 120.00162 * 354.93615 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0475 1.2138 0.0000 4 6 1.4138 2.4746 -0.0008 5 6 2.3812 3.4145 -0.0011 6 7 3.5900 2.7851 0.0050 7 1 4.4555 3.2232 0.0095 8 6 3.3809 1.4325 0.0005 9 6 4.4514 0.3718 0.0024 10 1 4.1166 -0.4812 0.5925 11 7 5.6824 0.9195 0.5876 12 6 4.7218 -0.0713 -1.4124 13 1 4.2351 0.4280 -2.2371 14 6 5.5905 -1.1144 -1.6540 15 7 5.9278 -1.4168 -2.8887 16 14 6.2883 -2.0982 -0.2275 17 1 7.5563 -1.4752 0.2300 18 1 5.3110 -2.1101 0.8905 19 1 6.5524 -3.4912 -0.6691 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 0.3489 2.6542 -0.0010 24 1 2.2247 4.4830 -0.0020 25 1 6.3837 0.2016 0.6919 26 1 6.0324 1.6899 0.0381 27 1 5.5101 -0.9552 -3.6324 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238428630.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:50 Heat of formation + Delta-G solvation = -19.751262 kcal Electronic energy + Delta-G solvation = -12477.074753 eV Core-core repulsion = 10234.921351 eV Total energy + Delta-G solvation = -2242.153402 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.02734 -38.62473 -36.70154 -33.86932 -31.12145 -30.07154 -27.90362 -27.01937 -23.63825 -21.44090 -21.00918 -19.89235 -18.68834 -16.82608 -16.57698 -16.44668 -15.70118 -15.52622 -15.11068 -14.61474 -14.37857 -13.96765 -13.73241 -13.18204 -12.83151 -12.37263 -11.98085 -11.92554 -11.79912 -11.33154 -10.78067 -9.68665 -9.34764 -8.88741 -8.27492 -6.51704 1.36366 1.49535 1.50878 1.66414 2.14760 2.37363 2.39147 2.98130 3.12881 3.93837 4.24724 4.47737 4.49974 4.51724 4.66249 4.78947 4.84306 5.16568 5.32684 5.61776 5.81109 5.90567 6.12012 6.36341 6.43290 6.66669 6.87921 6.97614 7.30999 8.54162 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.038736 B = 0.013100 C = 0.011516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.665739 B = 2136.877090 C = 2430.758640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.341 6.341 3 C -0.011 4.011 4 C -0.273 4.273 5 C 0.011 3.989 6 N -0.536 5.536 7 H 0.426 0.574 8 C 0.008 3.992 9 C 0.252 3.748 10 H 0.041 0.959 11 N -0.837 5.837 12 C -0.608 4.608 13 H 0.009 0.991 14 C -0.023 4.023 15 N -0.935 5.935 16 Si 1.087 2.913 17 H -0.245 1.245 18 H -0.262 1.262 19 H -0.287 1.287 20 H 0.060 0.940 21 H 0.048 0.952 22 H 0.106 0.894 23 H 0.155 0.845 24 H 0.210 0.790 25 H 0.327 0.673 26 H 0.333 0.667 27 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.605 7.790 8.178 13.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.255 6.255 3 C -0.060 4.060 4 C -0.299 4.299 5 C -0.122 4.122 6 N -0.134 5.134 7 H 0.264 0.736 8 C -0.105 4.105 9 C 0.141 3.859 10 H 0.058 0.942 11 N -0.367 5.367 12 C -0.648 4.648 13 H 0.027 0.973 14 C -0.221 4.221 15 N -0.571 5.571 16 Si 0.908 3.092 17 H -0.169 1.169 18 H -0.186 1.186 19 H -0.213 1.213 20 H 0.079 0.921 21 H 0.067 0.933 22 H 0.124 0.876 23 H 0.173 0.827 24 H 0.226 0.774 25 H 0.141 0.859 26 H 0.144 0.856 27 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.807 6.616 9.200 12.733 hybrid contribution -0.733 1.035 -2.106 2.458 sum -6.540 7.651 7.094 12.314 Atomic orbital electron populations 1.23039 0.77691 1.04080 1.01243 1.85987 1.22222 1.25997 1.91319 1.18151 0.91669 0.85514 1.10641 1.21100 1.00196 0.90618 1.17998 1.22246 0.82793 0.99546 1.07585 1.41550 1.09109 1.04380 1.58357 0.73573 1.19557 0.93399 0.84857 1.12642 1.17644 0.85930 0.90320 0.92042 0.94157 1.59588 1.07934 1.13739 1.55479 1.22803 1.29480 1.19302 0.93229 0.97266 1.27327 0.95334 0.96337 1.03103 1.70935 1.41902 1.44941 0.99368 0.83468 0.77684 0.75736 0.72360 1.16934 1.18637 1.21290 0.92113 0.93315 0.87612 0.82708 0.77353 0.85884 0.85625 0.94065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.05 10.20 113.37 1.16 2.21 15 2 O -0.34 -15.18 10.54 -96.14 -1.01 -16.19 15 3 C -0.01 -0.46 6.93 22.26 0.15 -0.31 15 4 C -0.27 -9.37 9.93 22.20 0.22 -9.15 15 5 C 0.01 0.32 11.93 83.23 0.99 1.32 15 6 N -0.54 -18.89 5.93 -182.24 -1.08 -19.97 15 7 H 0.43 12.71 8.23 -92.70 -0.76 11.95 15 8 C 0.01 0.38 6.07 41.06 0.25 0.63 15 9 C 0.25 12.59 2.65 43.42 0.12 12.70 15 10 H 0.04 2.18 6.62 -2.39 -0.02 2.17 15 11 N -0.84 -35.38 9.05 -174.95 -1.58 -36.96 15 12 C -0.61 -35.81 9.07 25.60 0.23 -35.57 15 13 H 0.01 0.60 7.97 -2.91 -0.02 0.57 15 14 C -0.02 -1.34 5.46 84.65 0.46 -0.88 15 15 N -0.94 -59.43 13.70 21.45 0.29 -59.13 15 16 Si 1.09 50.33 25.54 68.60 1.75 52.08 15 17 H -0.24 -9.86 6.93 99.48 0.69 -9.17 15 18 H -0.26 -11.57 6.36 99.48 0.63 -10.94 15 19 H -0.29 -13.33 7.11 99.48 0.71 -12.62 15 20 H 0.06 1.57 8.11 -2.39 -0.02 1.55 15 21 H 0.05 1.38 8.10 -2.39 -0.02 1.36 15 22 H 0.11 2.70 8.14 -2.39 -0.02 2.68 15 23 H 0.16 4.31 7.75 -2.91 -0.02 4.29 15 24 H 0.21 3.91 8.06 -2.91 -0.02 3.88 15 25 H 0.33 13.63 5.47 -89.70 -0.49 13.14 15 26 H 0.33 13.02 8.27 -89.69 -0.74 12.28 15 27 H 0.25 16.31 8.72 -92.71 -0.81 15.50 15 Total: -1.00 -73.63 232.83 1.03 -72.60 By element: Atomic # 1 Polarization: 37.56 SS G_CDS: -0.92 Total: 36.64 kcal Atomic # 6 Polarization: -32.64 SS G_CDS: 3.58 Total: -29.06 kcal Atomic # 7 Polarization: -113.70 SS G_CDS: -2.37 Total: -116.07 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -1.01 Total: -16.19 kcal Atomic # 14 Polarization: 50.33 SS G_CDS: 1.75 Total: 52.08 kcal Total: -73.63 1.03 -72.60 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238428630.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.844 kcal (2) G-P(sol) polarization free energy of solvation -73.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds