Wall clock time and date at job start Mon Mar 30 2020 02:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35866 * 117.00118 * 2 1 4 4 N 1.36405 * 125.92498 * 359.97438 * 3 2 1 5 5 H 0.96998 * 125.66904 * 359.97438 * 4 3 2 6 6 C 1.36919 * 108.66804 * 179.97438 * 4 3 2 7 7 C 1.34745 * 108.26240 * 359.74888 * 6 4 3 8 8 C 1.35375 * 125.92647 * 179.97438 * 3 2 1 9 9 C 1.50701 * 126.28781 * 359.97438 * 8 3 2 10 10 H 1.09002 * 109.47060 * 324.99807 * 9 8 3 11 11 N 1.46901 * 109.46921 * 204.99626 * 9 8 3 12 12 C 1.50699 * 109.47269 * 84.99660 * 9 8 3 13 13 H 1.08000 * 119.99792 * 0.02562 * 12 9 8 14 14 C 1.37878 * 119.99902 * 179.97438 * 12 9 8 15 15 N 1.31522 * 119.99730 * 179.97438 * 14 12 9 16 16 Si 1.86801 * 120.00223 * 0.02562 * 14 12 9 17 17 H 1.48501 * 109.46854 * 89.99533 * 16 14 12 18 18 H 1.48495 * 109.46995 * 209.99565 * 16 14 12 19 19 H 1.48503 * 109.46814 * 329.99605 * 16 14 12 20 20 H 1.08998 * 109.47291 * 59.99998 * 1 2 3 21 21 H 1.08997 * 109.47358 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46924 * 300.00353 * 1 2 3 23 23 H 1.08004 * 125.86835 * 180.02562 * 6 4 3 24 24 H 1.08004 * 126.25369 * 180.23535 * 7 6 4 25 25 H 1.00898 * 111.00245 * 299.99784 * 11 9 8 26 26 H 1.00904 * 111.00313 * 63.95601 * 11 9 8 27 27 H 0.96999 * 119.99784 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2106 0.0000 4 7 1.4250 2.4251 -0.0005 5 1 0.4659 2.5701 -0.0013 6 6 2.3806 3.4058 0.0003 7 6 3.5917 2.8152 0.0068 8 6 3.3832 1.4206 0.0005 9 6 4.4528 0.3589 0.0017 10 1 4.1174 -0.4941 0.5916 11 7 5.6843 0.9053 0.5871 12 6 4.7227 -0.0838 -1.4133 13 1 4.1748 0.3596 -2.2316 14 6 5.6698 -1.0542 -1.6632 15 7 5.9050 -1.4409 -2.8981 16 14 6.6179 -1.8205 -0.2478 17 1 5.8868 -3.0137 0.2491 18 1 7.9666 -2.2267 -0.7180 19 1 6.7539 -0.8303 0.8505 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 2.1954 4.4698 0.0005 24 1 4.5475 3.3181 0.0126 25 1 6.0157 1.6978 0.0578 26 1 5.5465 1.1499 1.5563 27 1 6.5710 -2.1238 -3.0739 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238436704.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:46 Heat of formation + Delta-G solvation = -4.949277 kcal Electronic energy + Delta-G solvation = -12455.474504 eV Core-core repulsion = 10213.962965 eV Total energy + Delta-G solvation = -2241.511539 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.15291 -38.68772 -36.54838 -33.85209 -31.20786 -29.78998 -28.19215 -27.15348 -23.67624 -21.54652 -20.58044 -19.44193 -18.82103 -16.81909 -16.52483 -16.22595 -16.10319 -15.57001 -14.85633 -14.45860 -14.30542 -13.95403 -13.47580 -12.85755 -12.73802 -12.47183 -12.22740 -12.03945 -11.72413 -11.33067 -10.64912 -9.50524 -8.80339 -8.33672 -8.14189 -6.23930 1.47031 1.55815 1.60233 1.99659 2.15935 2.24618 2.67224 2.69603 3.24111 4.15326 4.26309 4.39900 4.45736 4.53606 4.58829 4.83566 5.09154 5.23091 5.49332 5.70311 5.80595 6.09020 6.29480 6.42032 6.74483 6.91469 7.06467 7.21560 7.52456 8.99702 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.040402 B = 0.012726 C = 0.011265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.871481 B = 2199.639757 C = 2484.932096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.321 6.321 3 C 0.183 3.817 4 N -0.575 5.575 5 H 0.423 0.577 6 C -0.013 4.013 7 C -0.195 4.195 8 C -0.213 4.213 9 C 0.265 3.735 10 H 0.020 0.980 11 N -0.831 5.831 12 C -0.499 4.499 13 H 0.013 0.987 14 C 0.016 3.984 15 N -0.961 5.961 16 Si 0.933 3.067 17 H -0.306 1.306 18 H -0.313 1.313 19 H -0.155 1.155 20 H 0.058 0.942 21 H 0.116 0.884 22 H 0.070 0.930 23 H 0.209 0.791 24 H 0.142 0.858 25 H 0.334 0.666 26 H 0.328 0.672 27 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.843 9.376 10.020 17.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.232 6.232 3 C 0.030 3.970 4 N -0.187 5.187 5 H 0.263 0.737 6 C -0.140 4.140 7 C -0.220 4.220 8 C -0.222 4.222 9 C 0.154 3.846 10 H 0.038 0.962 11 N -0.361 5.361 12 C -0.537 4.537 13 H 0.031 0.969 14 C -0.181 4.181 15 N -0.602 5.602 16 Si 0.758 3.242 17 H -0.234 1.234 18 H -0.241 1.241 19 H -0.075 1.075 20 H 0.076 0.924 21 H 0.134 0.866 22 H 0.089 0.911 23 H 0.225 0.775 24 H 0.160 0.840 25 H 0.148 0.852 26 H 0.140 0.860 27 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.488 8.359 9.783 16.601 hybrid contribution -0.844 0.149 -0.275 0.900 sum -11.333 8.507 9.509 17.065 Atomic orbital electron populations 1.23250 0.77086 1.05947 1.01808 1.86358 1.22880 1.23016 1.90924 1.18831 0.90674 0.78253 1.09259 1.42157 1.09516 1.04344 1.62694 0.73745 1.22082 0.86564 0.94511 1.10866 1.20721 0.98675 0.91744 1.10896 1.20118 0.91521 0.96747 1.13821 1.17361 0.84446 0.90297 0.92474 0.96217 1.59706 1.32368 1.38197 1.05790 1.21059 1.20306 1.20434 0.91927 0.96864 1.25979 0.97342 0.96395 0.98362 1.70137 1.35443 1.32255 1.22348 0.86275 0.75345 0.78341 0.84223 1.23385 1.24145 1.07526 0.92374 0.86607 0.91102 0.77477 0.83993 0.85243 0.85997 0.93251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.33 10.29 113.37 1.17 1.50 15 2 O -0.32 -12.55 10.52 -92.04 -0.97 -13.52 15 3 C 0.18 7.15 7.71 83.32 0.64 7.80 15 4 N -0.58 -16.01 5.86 -305.19 -1.79 -17.80 15 5 H 0.42 8.07 8.29 -92.71 -0.77 7.30 15 6 C -0.01 -0.35 11.95 83.10 0.99 0.64 15 7 C -0.20 -6.89 10.11 22.15 0.22 -6.67 15 8 C -0.21 -9.33 5.19 -19.85 -0.10 -9.43 15 9 C 0.27 13.32 2.54 43.42 0.11 13.43 15 10 H 0.02 1.06 7.57 -2.39 -0.02 1.04 15 11 N -0.83 -35.49 5.60 -174.95 -0.98 -36.47 15 12 C -0.50 -30.93 9.29 25.60 0.24 -30.70 15 13 H 0.01 0.92 7.98 -2.91 -0.02 0.89 15 14 C 0.02 0.99 5.47 84.65 0.46 1.45 15 15 N -0.96 -64.97 13.96 21.45 0.30 -64.67 15 16 Si 0.93 48.23 26.94 68.60 1.85 50.08 15 17 H -0.31 -15.99 7.11 99.48 0.71 -15.29 15 18 H -0.31 -16.38 7.11 99.48 0.71 -15.67 15 19 H -0.15 -7.08 5.17 99.48 0.51 -6.56 15 20 H 0.06 1.23 8.14 -2.39 -0.02 1.21 15 21 H 0.12 2.36 8.14 -2.39 -0.02 2.34 15 22 H 0.07 1.29 8.14 -2.39 -0.02 1.27 15 23 H 0.21 3.49 8.06 -2.91 -0.02 3.46 15 24 H 0.14 4.57 7.49 -2.91 -0.02 4.55 15 25 H 0.33 13.81 8.06 -89.70 -0.72 13.09 15 26 H 0.33 11.84 9.06 -89.69 -0.81 11.03 15 27 H 0.26 16.54 8.31 -92.71 -0.77 15.77 15 Total: -1.00 -80.77 234.06 0.85 -79.92 By element: Atomic # 1 Polarization: 25.73 SS G_CDS: -1.29 Total: 24.44 kcal Atomic # 6 Polarization: -25.72 SS G_CDS: 3.73 Total: -21.98 kcal Atomic # 7 Polarization: -116.47 SS G_CDS: -2.47 Total: -118.93 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: -0.97 Total: -13.52 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 1.85 Total: 50.08 kcal Total: -80.77 0.85 -79.92 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238436704.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.967 kcal (2) G-P(sol) polarization free energy of solvation -80.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds