Wall clock time and date at job start Mon Mar 30 2020 02:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36229 * 116.99620 * 2 1 4 4 C 1.35125 * 126.32092 * 359.97438 * 3 2 1 5 5 N 1.36866 * 108.10886 * 180.02562 * 4 3 2 6 6 H 0.97001 * 125.63939 * 179.97438 * 5 4 3 7 7 C 1.36288 * 108.71257 * 0.24173 * 5 4 3 8 8 C 1.50697 * 125.83623 * 179.71849 * 7 5 4 9 9 H 1.09001 * 109.47338 * 185.02568 * 8 7 5 10 10 N 1.46900 * 109.47311 * 305.02356 * 8 7 5 11 11 C 1.50702 * 109.47134 * 65.02420 * 8 7 5 12 12 H 1.07996 * 119.99862 * 359.97438 * 11 8 7 13 13 C 1.37882 * 119.99926 * 179.97438 * 11 8 7 14 14 N 1.31509 * 120.00305 * 0.02562 * 13 11 8 15 15 Si 1.86800 * 119.99765 * 180.02562 * 13 11 8 16 16 H 1.48504 * 109.46972 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.46892 * 120.00054 * 15 13 11 18 18 H 1.48503 * 109.47084 * 240.00348 * 15 13 11 19 19 C 1.34878 * 108.32249 * 359.60071 * 7 5 4 20 20 H 1.09003 * 109.46652 * 60.00447 * 1 2 3 21 21 H 1.09004 * 109.46610 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47715 * 299.99948 * 1 2 3 23 23 H 1.07999 * 125.94371 * 0.03526 * 4 3 2 24 24 H 1.00900 * 110.99993 * 60.00564 * 10 8 7 25 25 H 1.00906 * 111.00011 * 183.95136 * 10 8 7 26 26 H 0.96995 * 120.00416 * 180.02562 * 14 13 11 27 27 H 1.08003 * 126.25258 * 180.14653 * 19 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0474 1.2139 0.0000 4 6 1.4406 2.4212 -0.0005 5 7 2.4119 3.3855 -0.0009 6 1 2.2576 4.3431 -0.0016 7 6 3.6316 2.7774 -0.0061 8 6 4.9662 3.4772 -0.0142 9 1 5.7630 2.7391 -0.1070 10 7 5.0250 4.4065 -1.1504 11 6 5.1392 4.2441 1.2715 12 1 4.3604 4.2269 2.0194 13 6 6.2918 4.9678 1.4928 14 7 7.2400 4.9892 0.5818 15 14 6.5064 5.9178 3.0868 16 1 5.3051 5.7316 3.9396 17 1 7.7053 5.4154 3.8048 18 1 6.6798 7.3611 2.7833 19 6 3.4399 1.4424 0.0000 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 0.3747 2.5950 -0.0004 24 1 4.2959 5.1012 -1.0874 25 1 5.9335 4.8408 -1.2158 26 1 8.0509 5.4980 0.7376 27 1 4.2112 0.6864 0.0002 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238442586.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:53 Heat of formation + Delta-G solvation = -20.948626 kcal Electronic energy + Delta-G solvation = -12145.797012 eV Core-core repulsion = 9903.591688 eV Total energy + Delta-G solvation = -2242.205323 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.01737 -38.78846 -36.39555 -33.25132 -31.43919 -29.41039 -27.80544 -27.64512 -24.01617 -21.26488 -21.04751 -18.85588 -18.31620 -16.77921 -16.66432 -16.41610 -16.07912 -15.18174 -15.02671 -14.66171 -14.24154 -13.62049 -13.21752 -13.12533 -12.84316 -12.63160 -12.11521 -12.00508 -11.92371 -11.80004 -10.75065 -9.36217 -9.17194 -8.56046 -8.12420 -6.41659 1.36033 1.40055 1.48405 1.53936 2.14991 2.37337 2.46340 2.93043 3.04095 4.31004 4.35409 4.40761 4.54138 4.63532 4.71048 4.80703 5.03935 5.25874 5.44777 5.60676 5.72561 6.00089 6.37739 6.59079 6.72043 6.85051 6.99624 7.06912 7.35841 8.80034 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.060770 B = 0.008810 C = 0.008365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.645048 B = 3177.494742 C = 3346.571582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.334 6.334 3 C 0.020 3.980 4 C -0.102 4.102 5 N -0.536 5.536 6 H 0.423 0.577 7 C 0.098 3.902 8 C 0.269 3.731 9 H 0.024 0.976 10 N -0.840 5.840 11 C -0.563 4.563 12 H 0.049 0.951 13 C 0.025 3.975 14 N -0.913 5.913 15 Si 0.963 3.037 16 H -0.273 1.273 17 H -0.282 1.282 18 H -0.275 1.275 19 C -0.260 4.260 20 H 0.058 0.942 21 H 0.114 0.886 22 H 0.056 0.944 23 H 0.194 0.806 24 H 0.317 0.683 25 H 0.350 0.650 26 H 0.270 0.730 27 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.513 -2.155 -0.210 11.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.248 6.248 3 C -0.030 4.030 4 C -0.231 4.231 5 N -0.134 5.134 6 H 0.261 0.739 7 C -0.020 4.020 8 C 0.159 3.841 9 H 0.042 0.958 10 N -0.369 5.369 11 C -0.603 4.603 12 H 0.067 0.933 13 C -0.176 4.176 14 N -0.552 5.552 15 Si 0.788 3.212 16 H -0.198 1.198 17 H -0.207 1.207 18 H -0.201 1.201 19 C -0.285 4.285 20 H 0.077 0.923 21 H 0.132 0.868 22 H 0.074 0.926 23 H 0.211 0.789 24 H 0.127 0.873 25 H 0.165 0.835 26 H 0.079 0.921 27 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -11.444 -2.815 -0.716 11.807 hybrid contribution 0.451 1.547 1.534 2.225 sum -10.994 -1.268 0.818 11.097 Atomic orbital electron populations 1.23168 0.77285 1.04841 1.01625 1.85963 1.22524 1.25150 1.91131 1.18175 0.91852 0.84713 1.08243 1.21842 0.95169 0.86763 1.19279 1.41494 1.04536 1.08854 1.58555 0.73920 1.20598 0.87857 0.91532 1.01965 1.17409 0.86666 0.91304 0.88764 0.95792 1.59437 1.09766 1.23212 1.44513 1.22023 1.03565 1.30525 1.04166 0.93297 1.25732 0.94935 0.97051 0.99851 1.69831 1.07928 1.41909 1.35546 0.85441 0.77879 0.78272 0.79559 1.19787 1.20748 1.20084 1.20144 0.94105 0.94804 1.19483 0.92347 0.86775 0.92552 0.78866 0.87337 0.83488 0.92104 0.85968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.12 113.37 1.15 1.70 15 2 O -0.33 -11.55 10.59 -96.17 -1.02 -12.56 15 3 C 0.02 0.79 7.06 22.26 0.16 0.94 15 4 C -0.10 -3.40 11.02 83.19 0.92 -2.48 15 5 N -0.54 -19.85 6.09 -182.20 -1.11 -20.96 15 6 H 0.42 13.64 8.96 -92.71 -0.83 12.81 15 7 C 0.10 4.43 5.90 41.09 0.24 4.68 15 8 C 0.27 13.69 3.19 43.42 0.14 13.82 15 9 H 0.02 1.38 8.11 -2.39 -0.02 1.36 15 10 N -0.84 -39.68 9.18 -174.95 -1.61 -41.28 15 11 C -0.56 -29.90 8.71 25.60 0.22 -29.67 15 12 H 0.05 2.62 7.74 -2.91 -0.02 2.60 15 13 C 0.03 1.33 5.38 84.66 0.46 1.78 15 14 N -0.91 -49.53 11.54 21.45 0.25 -49.28 15 15 Si 0.96 41.97 29.54 68.60 2.03 44.00 15 16 H -0.27 -11.82 7.11 99.48 0.71 -11.11 15 17 H -0.28 -12.24 7.11 99.48 0.71 -11.53 15 18 H -0.28 -11.58 7.11 99.48 0.71 -10.87 15 19 C -0.26 -11.70 10.74 22.20 0.24 -11.47 15 20 H 0.06 1.12 8.09 -2.39 -0.02 1.10 15 21 H 0.11 1.86 8.14 -2.38 -0.02 1.84 15 22 H 0.06 1.10 8.09 -2.39 -0.02 1.08 15 23 H 0.19 4.62 7.62 -2.91 -0.02 4.60 15 24 H 0.32 13.68 8.98 -89.69 -0.81 12.87 15 25 H 0.35 17.67 7.08 -89.69 -0.63 17.03 15 26 H 0.27 13.84 8.31 -92.71 -0.77 13.07 15 27 H 0.12 5.53 8.06 -2.91 -0.02 5.51 15 Total: -1.00 -61.42 239.56 0.99 -60.43 By element: Atomic # 1 Polarization: 41.42 SS G_CDS: -1.07 Total: 40.36 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: 3.52 Total: -20.69 kcal Atomic # 7 Polarization: -109.05 SS G_CDS: -2.47 Total: -111.52 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: -1.02 Total: -12.56 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Total: -61.42 0.99 -60.43 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238442586.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.477 kcal (2) G-P(sol) polarization free energy of solvation -61.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds