Wall clock time and date at job start Mon Mar 30 2020 02:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.36228 * 117.00496 * 2 1 4 4 C 1.35122 * 126.31655 * 0.04344 * 3 2 1 5 5 N 1.36868 * 108.10714 * 179.97438 * 4 3 2 6 6 H 0.96997 * 125.63740 * 180.02562 * 5 4 3 7 7 C 1.36284 * 108.71223 * 359.75644 * 5 4 3 8 8 C 1.34888 * 108.32446 * 0.39943 * 7 5 4 9 9 C 1.50698 * 126.25285 * 179.87487 * 8 7 5 10 10 H 1.09001 * 109.46916 * 144.68290 * 9 8 7 11 11 N 1.46897 * 109.47283 * 24.68424 * 9 8 7 12 12 C 1.50699 * 109.47234 * 264.68272 * 9 8 7 13 13 H 1.08006 * 119.99604 * 5.41619 * 12 9 8 14 14 C 1.37871 * 120.00296 * 185.41887 * 12 9 8 15 15 N 1.31517 * 120.00153 * 9.69456 * 14 12 9 16 16 Si 1.86794 * 120.00348 * 189.69626 * 14 12 9 17 17 H 1.48508 * 109.47294 * 84.98826 * 16 14 12 18 18 H 1.48500 * 109.47419 * 204.99093 * 16 14 12 19 19 H 1.48506 * 109.47183 * 324.99207 * 16 14 12 20 20 H 1.09000 * 109.46788 * 59.99409 * 1 2 3 21 21 H 1.08994 * 109.48003 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46751 * 300.00566 * 1 2 3 23 23 H 1.08000 * 125.94592 * 359.96052 * 4 3 2 24 24 H 1.08003 * 125.83588 * 180.27834 * 7 5 4 25 25 H 1.00904 * 110.99818 * 177.35478 * 11 9 8 26 26 H 1.00894 * 111.00101 * 301.30946 * 11 9 8 27 27 H 0.97001 * 120.00378 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0475 1.2137 0.0000 4 6 1.4408 2.4211 0.0008 5 7 2.4122 3.3853 0.0011 6 1 2.2580 4.3429 0.0020 7 6 3.6319 2.7772 0.0059 8 6 3.4400 1.4420 -0.0002 9 6 4.5162 0.3871 -0.0006 10 1 4.1864 -0.4685 0.5888 11 7 5.7447 0.9405 0.5845 12 6 4.7879 -0.0529 -1.4161 13 1 4.3009 0.4476 -2.2400 14 6 5.6582 -1.0942 -1.6594 15 7 6.1029 -1.8263 -0.6614 16 14 6.2056 -1.4653 -3.4063 17 1 7.3635 -0.6035 -3.7559 18 1 6.6023 -2.8927 -3.5081 19 1 5.0863 -1.1945 -4.3439 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3635 -1.0275 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 0.3749 2.5950 0.0010 24 1 4.5884 3.2786 0.0115 25 1 6.4687 0.2396 0.6352 26 1 6.0590 1.7484 0.0683 27 1 6.7155 -2.5588 -0.8325 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238443177.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:00 Heat of formation + Delta-G solvation = -16.036676 kcal Electronic energy + Delta-G solvation = -12378.597984 eV Core-core repulsion = 10136.605659 eV Total energy + Delta-G solvation = -2241.992325 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.91532 -38.58003 -36.51004 -33.44615 -30.92058 -28.95164 -27.82528 -27.73466 -24.20641 -21.27635 -20.26609 -19.07236 -18.45603 -16.76133 -16.54142 -16.35241 -15.78696 -15.25352 -14.78419 -14.40665 -14.31613 -14.06090 -13.19785 -12.92657 -12.66453 -12.53948 -12.05870 -11.98864 -11.91048 -11.41298 -10.59796 -9.24367 -8.87138 -8.55186 -8.01317 -6.24745 1.38352 1.39409 1.49077 1.52275 2.25228 2.47990 2.56506 3.07114 3.12673 4.31865 4.38502 4.53113 4.57724 4.61456 4.76803 4.78840 5.14398 5.38349 5.70396 5.75305 5.91980 6.16624 6.37330 6.77521 6.89234 6.97560 7.12124 7.20806 7.47211 8.93092 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.037273 B = 0.012027 C = 0.010696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.027943 B = 2327.604582 C = 2617.288869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.341 6.341 3 C 0.005 3.995 4 C -0.095 4.095 5 N -0.542 5.542 6 H 0.433 0.567 7 C 0.013 3.987 8 C -0.172 4.172 9 C 0.280 3.720 10 H -0.006 1.006 11 N -0.836 5.836 12 C -0.546 4.546 13 H 0.039 0.961 14 C 0.017 3.983 15 N -0.919 5.919 16 Si 0.956 3.044 17 H -0.268 1.268 18 H -0.283 1.283 19 H -0.278 1.278 20 H 0.057 0.943 21 H 0.101 0.899 22 H 0.061 0.939 23 H 0.193 0.807 24 H 0.182 0.818 25 H 0.333 0.667 26 H 0.321 0.679 27 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.489 9.631 -0.035 12.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.254 6.254 3 C -0.046 4.046 4 C -0.224 4.224 5 N -0.143 5.143 6 H 0.274 0.726 7 C -0.119 4.119 8 C -0.180 4.180 9 C 0.170 3.830 10 H 0.012 0.988 11 N -0.362 5.362 12 C -0.586 4.586 13 H 0.057 0.943 14 C -0.182 4.182 15 N -0.559 5.559 16 Si 0.782 3.218 17 H -0.193 1.193 18 H -0.209 1.209 19 H -0.203 1.203 20 H 0.076 0.924 21 H 0.120 0.880 22 H 0.080 0.920 23 H 0.210 0.790 24 H 0.199 0.801 25 H 0.144 0.856 26 H 0.132 0.868 27 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.810 9.555 0.681 13.015 hybrid contribution 0.500 -0.527 -1.732 1.878 sum -8.311 9.028 -1.051 12.316 Atomic orbital electron populations 1.23106 0.77872 1.04274 1.01538 1.86106 1.22090 1.26290 1.90948 1.18524 0.92428 0.84805 1.08876 1.21736 0.95376 0.86555 1.18715 1.41361 1.04395 1.08689 1.59891 0.72646 1.21499 0.90008 0.91356 1.09040 1.19562 0.92287 0.95081 1.11094 1.16951 0.85820 0.89104 0.91160 0.98766 1.59417 1.08443 1.11230 1.57088 1.22010 1.25611 1.16914 0.94047 0.94311 1.25787 0.96631 0.94900 1.00904 1.70056 1.33595 1.19446 1.32778 0.85618 0.78571 0.77260 0.80393 1.19289 1.20863 1.20267 0.92428 0.88023 0.92003 0.78971 0.80067 0.85590 0.86846 0.92696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 10.13 113.37 1.15 1.93 15 2 O -0.34 -15.28 10.59 -96.16 -1.02 -16.30 15 3 C 0.00 0.20 7.01 22.26 0.16 0.35 15 4 C -0.09 -3.04 11.02 83.19 0.92 -2.12 15 5 N -0.54 -15.50 6.09 -193.98 -1.18 -16.68 15 6 H 0.43 8.03 8.96 -92.71 -0.83 7.19 15 7 C 0.01 0.48 11.18 83.23 0.93 1.41 15 8 C -0.17 -8.24 5.21 -19.93 -0.10 -8.34 15 9 C 0.28 15.68 3.07 43.42 0.13 15.81 15 10 H -0.01 -0.37 8.09 -2.39 -0.02 -0.39 15 11 N -0.84 -41.77 8.99 -174.96 -1.57 -43.34 15 12 C -0.55 -32.24 8.67 25.60 0.22 -32.02 15 13 H 0.04 2.33 7.76 -2.91 -0.02 2.31 15 14 C 0.02 1.00 5.27 84.65 0.45 1.45 15 15 N -0.92 -55.19 12.30 21.45 0.26 -54.93 15 16 Si 0.96 45.39 29.55 68.60 2.03 47.42 15 17 H -0.27 -12.06 7.11 99.48 0.71 -11.36 15 18 H -0.28 -13.14 7.11 99.48 0.71 -12.43 15 19 H -0.28 -13.14 7.11 99.48 0.71 -12.44 15 20 H 0.06 1.45 8.09 -2.39 -0.02 1.43 15 21 H 0.10 2.57 8.14 -2.39 -0.02 2.55 15 22 H 0.06 1.49 8.09 -2.39 -0.02 1.48 15 23 H 0.19 4.44 7.62 -2.91 -0.02 4.42 15 24 H 0.18 5.84 7.31 -2.91 -0.02 5.82 15 25 H 0.33 17.81 7.86 -89.69 -0.71 17.11 15 26 H 0.32 14.39 7.91 -89.70 -0.71 13.68 15 27 H 0.26 14.96 8.31 -92.71 -0.77 14.19 15 Total: -1.00 -73.12 238.54 1.33 -71.79 By element: Atomic # 1 Polarization: 34.60 SS G_CDS: -1.04 Total: 33.56 kcal Atomic # 6 Polarization: -25.38 SS G_CDS: 3.85 Total: -21.53 kcal Atomic # 7 Polarization: -112.46 SS G_CDS: -2.49 Total: -114.95 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -1.02 Total: -16.30 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -73.12 1.33 -71.79 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238443177.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.753 kcal (2) G-P(sol) polarization free energy of solvation -73.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds