Wall clock time and date at job start Mon Mar 30 2020 02:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 N 1.12404 * 1 3 3 N 1.12399 * 179.97438 * 2 1 4 4 C 1.46505 * 119.99690 * 196.89766 * 3 2 1 5 5 C 1.52995 * 109.47244 * 120.00048 * 4 3 2 6 6 H 1.09010 * 109.87025 * 64.56175 * 5 4 3 7 7 C 1.54320 * 110.01336 * 185.65894 * 5 4 3 8 8 C 1.55159 * 102.94349 * 141.68460 * 7 5 4 9 9 C 1.55129 * 101.48377 * 324.33664 * 8 7 5 10 10 N 1.47018 * 109.88358 * 303.54771 * 5 4 3 11 11 C 1.36945 * 125.64695 * 61.45002 * 10 5 4 12 12 H 1.07999 * 120.00077 * 359.97438 * 11 10 5 13 13 C 1.38812 * 119.99637 * 179.97438 * 11 10 5 14 14 N 1.31617 * 120.00227 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99854 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47118 * 90.00067 * 15 13 11 17 17 H 1.48499 * 109.47293 * 210.00071 * 15 13 11 18 18 H 1.48504 * 109.47104 * 330.00316 * 15 13 11 19 19 H 1.09003 * 109.46845 * 0.02562 * 4 3 2 20 20 H 1.09004 * 109.47181 * 240.00576 * 4 3 2 21 21 H 1.08996 * 110.72172 * 260.04734 * 7 5 4 22 22 H 1.08998 * 110.72014 * 23.14617 * 7 5 4 23 23 H 1.09004 * 111.00410 * 82.57393 * 8 7 5 24 24 H 1.08993 * 111.00686 * 206.38740 * 8 7 5 25 25 H 1.08996 * 110.49705 * 278.45279 * 9 8 7 26 26 H 1.08997 * 110.34301 * 156.05884 * 9 8 7 27 27 H 0.97005 * 120.00046 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 7 1.1240 0.0000 0.0000 3 7 2.2480 0.0005 0.0000 4 6 2.9799 1.2149 0.3688 5 6 3.8597 0.9298 1.5876 6 1 4.6234 0.1959 1.3298 7 6 4.5273 2.2334 2.0736 8 6 4.4868 2.0899 3.6180 9 6 3.1317 1.3636 3.8252 10 7 3.0333 0.4241 2.6934 11 6 2.2906 -0.7263 2.6734 12 1 2.2805 -1.3472 1.7898 13 6 1.5507 -1.0942 3.7888 14 7 1.5626 -0.3372 4.8654 15 14 0.5370 -2.6630 3.7612 16 1 1.3656 -3.7963 4.2451 17 1 -0.6467 -2.5030 4.6437 18 1 0.0861 -2.9367 2.3730 19 1 2.2712 2.0071 0.6100 20 1 3.6064 1.5292 -0.4660 21 1 5.5561 2.2952 1.7190 22 1 3.9562 3.1033 1.7493 23 1 5.3181 1.4825 3.9759 24 1 4.4830 3.0668 4.1012 25 1 2.3083 2.0772 3.7984 26 1 3.1336 0.8204 4.7702 27 1 1.0453 -0.5941 5.6447 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238546762.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:46 Heat of formation + Delta-G solvation = 110.056486 kcal Electronic energy + Delta-G solvation = -12741.018550 eV Core-core repulsion = 10536.786786 eV Total energy + Delta-G solvation = -2204.231764 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.102 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.41172 -39.36156 -36.91265 -34.60058 -31.70119 -30.99234 -27.09389 -26.03001 -22.07034 -21.29294 -19.76013 -19.19890 -18.75643 -18.00594 -17.04112 -16.43219 -16.06858 -15.68625 -14.19103 -13.98890 -13.74841 -13.56504 -13.04459 -12.81025 -12.71878 -12.16949 -12.07347 -11.73141 -11.40357 -11.34739 -10.85774 -10.73820 -9.62067 -8.87382 -7.78376 -5.20491 0.61919 1.37989 1.40135 1.46941 1.67298 2.45057 2.46187 3.31865 3.67197 4.04078 4.06124 4.24767 4.40791 4.55628 4.63079 4.81506 4.89652 5.07425 5.18120 5.30399 5.51474 5.57646 5.70781 5.85926 6.34251 7.12950 7.81803 8.42914 8.83682 9.22753 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.028091 B = 0.019129 C = 0.012410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.507879 B = 1463.387299 C = 2255.683005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.234 5.234 2 N 0.289 4.711 3 N -0.365 5.365 4 C 0.065 3.935 5 C 0.145 3.855 6 H 0.052 0.948 7 C -0.108 4.108 8 C -0.133 4.133 9 C 0.147 3.853 10 N -0.617 5.617 11 C -0.217 4.217 12 H 0.083 0.917 13 C -0.065 4.065 14 N -0.946 5.946 15 Si 0.950 3.050 16 H -0.284 1.284 17 H -0.294 1.294 18 H -0.277 1.277 19 H 0.051 0.949 20 H 0.137 0.863 21 H 0.104 0.896 22 H 0.079 0.921 23 H 0.062 0.938 24 H 0.082 0.918 25 H -0.018 1.018 26 H 0.068 0.932 27 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.113 5.811 -7.371 11.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.226 5.226 2 N 0.291 4.709 3 N -0.281 5.281 4 C -0.064 4.064 5 C 0.037 3.963 6 H 0.070 0.930 7 C -0.147 4.147 8 C -0.171 4.171 9 C 0.022 3.978 10 N -0.341 5.341 11 C -0.346 4.346 12 H 0.101 0.899 13 C -0.258 4.258 14 N -0.596 5.596 15 Si 0.780 3.220 16 H -0.211 1.211 17 H -0.220 1.220 18 H -0.203 1.203 19 H 0.070 0.930 20 H 0.154 0.846 21 H 0.122 0.878 22 H 0.097 0.903 23 H 0.081 0.919 24 H 0.100 0.900 25 H 0.000 1.000 26 H 0.086 0.914 27 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 5.587 5.218 -7.409 10.646 hybrid contribution -0.918 -0.535 0.610 1.225 sum 4.670 4.683 -6.798 9.484 Atomic orbital electron populations 1.87481 0.89443 1.05001 1.40724 1.41265 1.01860 1.15775 1.12020 1.70518 0.88558 1.28012 1.41024 1.23451 0.97038 0.84664 1.01270 1.21467 0.91991 0.96070 0.86763 0.93003 1.22552 1.01704 0.95298 0.95134 1.22881 0.97388 1.00260 0.96615 1.21815 0.92401 0.90260 0.93357 1.44914 1.53598 1.23168 1.12434 1.19452 1.18563 0.97989 0.98633 0.89919 1.25432 1.02442 1.01292 0.96611 1.70036 1.45977 1.39207 1.04420 0.85470 0.78459 0.80747 0.77321 1.21069 1.22038 1.20278 0.93001 0.84550 0.87783 0.90259 0.91886 0.89957 0.99980 0.91379 0.94677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.23 -9.61 20.57 37.02 0.76 -8.85 15 2 N 0.29 11.63 9.49 37.02 0.35 11.99 15 3 N -0.36 -13.87 8.98 -187.48 -1.68 -15.56 15 4 C 0.06 2.04 6.16 86.38 0.53 2.57 15 5 C 0.15 5.21 3.51 45.34 0.16 5.37 15 6 H 0.05 1.87 8.14 -2.38 -0.02 1.85 15 7 C -0.11 -2.98 6.48 31.78 0.21 -2.77 15 8 C -0.13 -4.47 7.10 32.06 0.23 -4.24 15 9 C 0.15 6.98 5.91 86.93 0.51 7.49 15 10 N -0.62 -29.94 3.13 -667.85 -2.09 -32.03 15 11 C -0.22 -11.88 8.78 84.03 0.74 -11.14 15 12 H 0.08 4.50 6.21 -2.91 -0.02 4.48 15 13 C -0.07 -3.76 5.49 84.86 0.47 -3.30 15 14 N -0.95 -57.05 10.08 21.65 0.22 -56.83 15 15 Si 0.95 47.72 29.55 68.60 2.03 49.75 15 16 H -0.28 -13.89 7.11 99.48 0.71 -13.18 15 17 H -0.29 -14.85 7.11 99.48 0.71 -14.14 15 18 H -0.28 -13.68 7.11 99.48 0.71 -12.97 15 19 H 0.05 1.69 7.97 -2.39 -0.02 1.67 15 20 H 0.14 2.98 8.14 -2.38 -0.02 2.96 15 21 H 0.10 2.12 8.14 -2.39 -0.02 2.10 15 22 H 0.08 1.93 7.80 -2.39 -0.02 1.91 15 23 H 0.06 2.10 8.14 -2.39 -0.02 2.08 15 24 H 0.08 2.37 8.14 -2.39 -0.02 2.35 15 25 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 15 26 H 0.07 3.79 5.85 -2.39 -0.01 3.78 15 27 H 0.24 14.44 8.31 -92.70 -0.77 13.67 15 Total: -1.00 -65.52 231.55 3.59 -61.92 By element: Atomic # 1 Polarization: -5.54 SS G_CDS: 1.16 Total: -4.38 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: 2.84 Total: -6.01 kcal Atomic # 7 Polarization: -98.84 SS G_CDS: -2.44 Total: -101.28 kcal Atomic # 14 Polarization: 47.72 SS G_CDS: 2.03 Total: 49.75 kcal Total: -65.52 3.59 -61.92 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238546762.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.980 kcal (2) G-P(sol) polarization free energy of solvation -65.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds