Wall clock time and date at job start Mon Mar 30 2020 01:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00126 * 2 1 4 4 H 1.48499 * 109.47346 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.46710 * 299.99638 * 3 2 1 6 6 H 1.48500 * 109.47506 * 59.99374 * 3 2 1 7 7 C 1.37879 * 120.00212 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00036 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99859 * 0.02562 * 7 2 1 10 10 C 1.50702 * 109.47142 * 179.97438 * 9 7 2 11 11 C 1.34512 * 125.78762 * 89.99616 * 10 9 7 12 12 C 1.41385 * 106.83926 * 179.76997 * 11 10 9 13 13 C 1.34515 * 106.83992 * 0.23220 * 12 11 10 14 14 C 1.50704 * 125.79099 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.46984 * 89.99648 * 14 13 12 16 16 O 1.42902 * 109.47213 * 179.97438 * 15 14 13 17 17 O 1.34305 * 125.78789 * 270.15828 * 10 9 7 18 18 H 0.97001 * 119.99918 * 0.02562 * 1 2 3 19 19 H 1.08999 * 109.47010 * 59.99492 * 9 7 2 20 20 H 1.09008 * 109.46874 * 299.99726 * 9 7 2 21 21 H 1.08002 * 126.58498 * 0.04167 * 11 10 9 22 22 H 1.08002 * 126.58069 * 180.26215 * 12 11 10 23 23 H 1.08999 * 109.46975 * 209.99542 * 14 13 12 24 24 H 1.08996 * 109.46842 * 329.99986 * 14 13 12 25 25 H 1.08999 * 109.47607 * 300.00413 * 15 14 13 26 26 H 1.09010 * 109.47235 * 60.00283 * 15 14 13 27 27 H 0.96694 * 114.00040 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2304 -3.6446 0.0005 11 6 2.7416 -4.2424 1.0917 12 6 3.6064 -5.2624 0.6326 13 6 3.5759 -5.2234 -0.7116 14 6 4.3460 -6.1296 -1.6374 15 6 3.5063 -7.3691 -1.9526 16 8 4.2362 -8.2281 -2.8309 17 8 2.7431 -4.2396 -1.0889 18 1 -0.4850 0.8401 -0.0004 19 1 0.6247 -2.5570 -0.8896 20 1 0.6241 -2.5567 0.8904 21 1 2.5287 -3.9942 2.1210 22 1 4.1809 -5.9426 1.2439 23 1 4.5707 -5.5981 -2.5621 24 1 5.2763 -6.4333 -1.1575 25 1 3.2815 -7.9005 -1.0279 26 1 2.5759 -7.0653 -2.4325 27 1 3.7636 -9.0361 -3.0734 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238682561.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:34 Heat of formation + Delta-G solvation = -55.391618 kcal Electronic energy + Delta-G solvation = -11763.290971 eV Core-core repulsion = 9487.299336 eV Total energy + Delta-G solvation = -2275.991635 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.089 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.81351 -37.07954 -33.60724 -32.76951 -31.88181 -29.59852 -26.06855 -23.52275 -22.03134 -20.88237 -19.37204 -17.61836 -16.53348 -15.57161 -15.25105 -15.20361 -14.44125 -13.83994 -13.43543 -12.60513 -12.35923 -12.07780 -11.98400 -11.56433 -11.37319 -11.17413 -10.82236 -10.58210 -10.04965 -9.89077 -9.55304 -9.14735 -8.51603 -7.47433 -6.12669 -4.17660 2.43678 3.26904 3.32259 3.36176 3.43485 3.58861 4.34595 4.40552 5.03242 5.19187 5.22619 5.32077 5.57564 5.69165 5.82095 5.94063 6.01167 6.55024 6.63394 6.94586 7.16759 7.31213 7.42996 7.48998 7.82327 8.09863 8.15564 8.85618 9.46571 10.96809 Molecular weight = 196.09amu Principal moments of inertia in cm(-1) A = 0.065543 B = 0.007009 C = 0.006923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.098435 B = 3993.675023 C = 4043.322177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.901 3.099 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.518 4.518 8 H 0.061 0.939 9 C 0.084 3.916 10 C 0.060 3.940 11 C -0.252 4.252 12 C -0.194 4.194 13 C -0.060 4.060 14 C -0.029 4.029 15 C 0.079 3.921 16 O -0.577 6.577 17 O -0.175 6.175 18 H 0.264 0.736 19 H 0.038 0.962 20 H 0.054 0.946 21 H 0.141 0.859 22 H 0.136 0.864 23 H 0.083 0.917 24 H 0.092 0.908 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.157 -11.878 -1.578 13.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.729 3.271 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.556 4.556 8 H 0.079 0.921 9 C 0.048 3.952 10 C 0.009 3.991 11 C -0.271 4.271 12 C -0.213 4.213 13 C -0.109 4.109 14 C -0.066 4.066 15 C 0.001 3.999 16 O -0.382 6.382 17 O -0.072 6.072 18 H 0.074 0.926 19 H 0.056 0.944 20 H 0.072 0.928 21 H 0.158 0.842 22 H 0.154 0.846 23 H 0.102 0.898 24 H 0.110 0.890 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 5.389 -11.208 -1.816 12.568 hybrid contribution 0.028 0.464 0.280 0.543 sum 5.417 -10.744 -1.536 12.130 Atomic orbital electron populations 1.69953 1.06049 1.27076 1.50085 1.24995 0.94960 0.99423 0.94841 0.86377 0.80107 0.82948 0.77707 1.19583 1.20782 1.20785 1.21054 0.93342 0.89496 1.51709 0.92104 1.18069 0.90929 0.86662 0.99567 1.23813 0.97232 0.95270 0.82747 1.21425 1.04784 1.01196 0.99683 1.21438 1.03985 1.02228 0.93656 1.21728 1.00252 0.95023 0.93932 1.19711 0.96591 0.91845 0.98483 1.22205 0.94228 0.90698 0.92764 1.86425 1.47296 1.36039 1.68481 1.84005 1.48017 1.38929 1.36217 0.92639 0.94423 0.92802 0.84154 0.84585 0.89849 0.88973 0.93187 0.93109 0.77347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.12 13.29 55.43 0.74 -25.39 15 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 15 3 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 15 4 H -0.27 -6.44 7.11 56.52 0.40 -6.03 15 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 7 C -0.52 -14.75 9.09 -34.44 -0.31 -15.07 15 8 H 0.06 1.74 7.74 -52.49 -0.41 1.34 15 9 C 0.08 2.22 5.51 -29.03 -0.16 2.06 15 10 C 0.06 1.42 6.51 -35.62 -0.23 1.18 15 11 C -0.25 -5.27 10.81 -39.70 -0.43 -5.70 15 12 C -0.19 -3.51 10.81 -39.70 -0.43 -3.94 15 13 C -0.06 -1.10 6.57 -35.62 -0.23 -1.34 15 14 C -0.03 -0.42 6.12 -27.88 -0.17 -0.59 15 15 C 0.08 0.97 7.03 37.16 0.26 1.23 15 16 O -0.58 -6.53 13.66 -35.23 -0.48 -7.01 15 17 O -0.17 -3.91 10.65 5.70 0.06 -3.85 15 18 H 0.26 7.23 8.31 -40.82 -0.34 6.89 15 19 H 0.04 1.03 8.14 -51.93 -0.42 0.61 15 20 H 0.05 1.43 8.14 -51.92 -0.42 1.01 15 21 H 0.14 2.74 8.06 -52.49 -0.42 2.31 15 22 H 0.14 2.02 8.06 -52.49 -0.42 1.59 15 23 H 0.08 1.21 8.14 -51.93 -0.42 0.78 15 24 H 0.09 1.17 8.14 -51.93 -0.42 0.75 15 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 15 26 H 0.05 0.64 8.14 -51.92 -0.42 0.21 15 27 H 0.38 2.41 9.12 45.56 0.42 2.83 15 LS Contribution 246.50 15.07 3.71 3.71 Total: -1.00 -31.28 246.50 -5.30 -36.58 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -2.51 Total: -0.03 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: -1.80 Total: -20.57 kcal Atomic # 7 Polarization: -26.12 SS G_CDS: 0.74 Total: -25.39 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: -0.42 Total: -10.86 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -31.28 -5.30 -36.58 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238682561.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.811 kcal (2) G-P(sol) polarization free energy of solvation -31.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds