Wall clock time and date at job start Mon Mar 30 2020 01:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00126 * 2 1 4 4 H 1.48499 * 109.47346 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.46710 * 299.99638 * 3 2 1 6 6 H 1.48500 * 109.47506 * 59.99374 * 3 2 1 7 7 C 1.37879 * 120.00212 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00036 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99859 * 0.02562 * 7 2 1 10 10 C 1.50702 * 109.47142 * 179.97438 * 9 7 2 11 11 C 1.34512 * 125.78762 * 89.99616 * 10 9 7 12 12 C 1.41385 * 106.83926 * 179.76997 * 11 10 9 13 13 C 1.34515 * 106.83992 * 0.23220 * 12 11 10 14 14 C 1.50704 * 125.79099 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.46984 * 89.99648 * 14 13 12 16 16 O 1.42902 * 109.47213 * 179.97438 * 15 14 13 17 17 O 1.34305 * 125.78789 * 270.15828 * 10 9 7 18 18 H 0.97001 * 119.99918 * 0.02562 * 1 2 3 19 19 H 1.08999 * 109.47010 * 59.99492 * 9 7 2 20 20 H 1.09008 * 109.46874 * 299.99726 * 9 7 2 21 21 H 1.08002 * 126.58498 * 0.04167 * 11 10 9 22 22 H 1.08002 * 126.58069 * 180.26215 * 12 11 10 23 23 H 1.08999 * 109.46975 * 209.99542 * 14 13 12 24 24 H 1.08996 * 109.46842 * 329.99986 * 14 13 12 25 25 H 1.08999 * 109.47607 * 300.00413 * 15 14 13 26 26 H 1.09010 * 109.47235 * 60.00283 * 15 14 13 27 27 H 0.96694 * 114.00040 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2304 -3.6446 0.0005 11 6 2.7416 -4.2424 1.0917 12 6 3.6064 -5.2624 0.6326 13 6 3.5759 -5.2234 -0.7116 14 6 4.3460 -6.1296 -1.6374 15 6 3.5063 -7.3691 -1.9526 16 8 4.2362 -8.2281 -2.8309 17 8 2.7431 -4.2396 -1.0889 18 1 -0.4850 0.8401 -0.0004 19 1 0.6247 -2.5570 -0.8896 20 1 0.6241 -2.5567 0.8904 21 1 2.5287 -3.9942 2.1210 22 1 4.1809 -5.9426 1.2439 23 1 4.5707 -5.5981 -2.5621 24 1 5.2763 -6.4333 -1.1575 25 1 3.2815 -7.9005 -1.0279 26 1 2.5759 -7.0653 -2.4325 27 1 3.7636 -9.0361 -3.0734 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238682561.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:33 Heat of formation + Delta-G solvation = -77.335399 kcal Electronic energy + Delta-G solvation = -11764.242524 eV Core-core repulsion = 9487.299336 eV Total energy + Delta-G solvation = -2276.943188 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.089 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.42849 -37.99182 -35.64037 -34.17145 -33.56353 -31.34214 -27.76137 -25.23999 -23.46161 -22.47265 -20.94937 -18.74812 -18.52429 -17.19592 -16.87641 -16.41931 -16.09102 -15.04814 -14.88762 -14.39284 -14.18036 -13.66034 -13.58109 -13.24395 -12.76314 -12.71073 -12.44645 -12.36313 -11.88459 -11.65034 -10.93812 -10.71478 -10.67920 -9.12486 -8.27063 -6.42831 0.87586 1.39039 1.39322 1.53228 1.78115 2.09181 2.38677 3.03498 3.34367 3.98411 4.03312 4.22114 4.27511 4.31928 4.51352 4.77414 4.91223 4.92969 5.04141 5.12963 5.33509 5.37132 5.62969 5.76647 6.02293 6.43038 6.65735 6.86528 7.26116 8.81507 Molecular weight = 196.09amu Principal moments of inertia in cm(-1) A = 0.065543 B = 0.007009 C = 0.006923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.098435 B = 3993.675023 C = 4043.322177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.973 3.027 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.270 1.270 7 C -0.541 4.541 8 H 0.053 0.947 9 C 0.093 3.907 10 C 0.013 3.987 11 C -0.242 4.242 12 C -0.194 4.194 13 C -0.050 4.050 14 C -0.030 4.030 15 C 0.086 3.914 16 O -0.587 6.587 17 O -0.199 6.199 18 H 0.270 0.730 19 H 0.011 0.989 20 H 0.040 0.960 21 H 0.150 0.850 22 H 0.177 0.823 23 H 0.078 0.922 24 H 0.116 0.884 25 H 0.066 0.934 26 H 0.042 0.958 27 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.802 -12.701 -1.320 14.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.190 4.190 3 Si 0.796 3.204 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.196 1.196 7 C -0.579 4.579 8 H 0.071 0.929 9 C 0.056 3.944 10 C -0.037 4.037 11 C -0.261 4.261 12 C -0.212 4.212 13 C -0.099 4.099 14 C -0.067 4.067 15 C 0.008 3.992 16 O -0.396 6.396 17 O -0.097 6.097 18 H 0.079 0.921 19 H 0.029 0.971 20 H 0.058 0.942 21 H 0.168 0.832 22 H 0.195 0.805 23 H 0.097 0.903 24 H 0.135 0.865 25 H 0.084 0.916 26 H 0.060 0.940 27 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 7.024 -12.060 -1.560 14.043 hybrid contribution -0.458 0.592 0.160 0.765 sum 6.566 -11.468 -1.400 13.289 Atomic orbital electron populations 1.70054 1.07560 1.28391 1.50398 1.25917 0.95891 1.03148 0.94015 0.85287 0.78663 0.78168 0.78265 1.19226 1.19912 1.19557 1.21325 0.93155 0.90995 1.52388 0.92885 1.17714 0.91247 0.87861 0.97590 1.23297 0.99528 0.96706 0.84165 1.21711 1.03991 1.00959 0.99419 1.21805 1.03674 1.01980 0.93774 1.22607 0.98381 0.93636 0.95264 1.19904 0.97212 0.91894 0.97716 1.22016 0.93282 0.90259 0.93643 1.86363 1.47807 1.37166 1.68279 1.83956 1.49132 1.40225 1.36350 0.92114 0.97066 0.94157 0.83207 0.80538 0.90313 0.86544 0.91626 0.93973 0.74751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.13 13.29 21.45 0.28 -54.84 15 2 C 0.01 0.54 5.46 84.66 0.46 1.00 15 3 Si 0.97 44.36 29.54 68.60 2.03 46.39 15 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 15 5 H -0.27 -12.07 7.11 99.48 0.71 -11.36 15 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 15 7 C -0.54 -31.67 9.09 25.60 0.23 -31.44 15 8 H 0.05 3.10 7.74 -2.91 -0.02 3.08 15 9 C 0.09 5.12 5.51 29.10 0.16 5.28 15 10 C 0.01 0.63 6.51 24.83 0.16 0.79 15 11 C -0.24 -9.95 10.81 22.19 0.24 -9.71 15 12 C -0.19 -6.52 10.81 22.19 0.24 -6.28 15 13 C -0.05 -1.75 6.57 24.83 0.16 -1.59 15 14 C -0.03 -0.79 6.12 29.85 0.18 -0.60 15 15 C 0.09 1.88 7.03 71.98 0.51 2.38 15 16 O -0.59 -11.53 13.66 -148.98 -2.04 -13.57 15 17 O -0.20 -8.98 10.65 -2.52 -0.03 -9.00 15 18 H 0.27 14.92 8.31 -92.71 -0.77 14.15 15 19 H 0.01 0.65 8.14 -2.39 -0.02 0.63 15 20 H 0.04 2.26 8.14 -2.38 -0.02 2.24 15 21 H 0.15 5.73 8.06 -2.91 -0.02 5.71 15 22 H 0.18 4.43 8.06 -2.91 -0.02 4.41 15 23 H 0.08 2.14 8.14 -2.39 -0.02 2.12 15 24 H 0.12 2.50 8.14 -2.39 -0.02 2.49 15 25 H 0.07 1.25 8.14 -2.39 -0.02 1.23 15 26 H 0.04 0.99 8.14 -2.38 -0.02 0.97 15 27 H 0.40 3.89 9.12 -74.06 -0.68 3.21 15 Total: -1.00 -67.75 246.50 3.09 -64.66 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: 0.49 Total: 6.53 kcal Atomic # 6 Polarization: -42.52 SS G_CDS: 2.35 Total: -40.17 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: 0.28 Total: -54.84 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -2.06 Total: -22.57 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -67.75 3.09 -64.66 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238682561.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.675 kcal (2) G-P(sol) polarization free energy of solvation -67.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds