Wall clock time and date at job start Mon Mar 30 2020 02:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00067 * 2 1 4 4 H 1.48498 * 109.47256 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46975 * 300.00190 * 3 2 1 6 6 H 1.48502 * 109.47007 * 60.00287 * 3 2 1 7 7 C 1.37875 * 119.99818 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99831 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00343 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47295 * 180.02562 * 9 7 2 11 11 C 1.35041 * 126.39322 * 269.95696 * 10 9 7 12 12 N 1.30503 * 108.69928 * 180.02562 * 11 10 9 13 13 C 1.34124 * 109.25583 * 0.02562 * 12 11 10 14 14 C 1.50698 * 125.99348 * 180.02562 * 13 12 11 15 15 C 1.53001 * 109.46879 * 304.99636 * 14 13 12 16 16 O 1.42902 * 109.46904 * 179.97438 * 15 14 13 17 17 C 1.34675 * 108.02139 * 359.97438 * 13 12 11 18 18 H 0.96997 * 119.99774 * 359.97438 * 1 2 3 19 19 H 1.08996 * 109.47112 * 60.00005 * 9 7 2 20 20 H 1.09002 * 109.46967 * 300.00003 * 9 7 2 21 21 H 1.07997 * 125.65385 * 0.05440 * 11 10 9 22 22 H 1.09002 * 109.47034 * 64.99474 * 14 13 12 23 23 H 1.08993 * 109.47516 * 184.99697 * 14 13 12 24 24 H 1.08997 * 109.47603 * 299.99749 * 15 14 13 25 25 H 1.09007 * 109.47118 * 59.99845 * 15 14 13 26 26 H 0.96710 * 113.99814 * 180.02562 * 16 15 14 27 27 H 1.07999 * 126.59056 * 179.74167 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.7231 -4.2222 -1.0876 12 7 3.5308 -5.1674 -0.6909 13 6 3.5546 -5.1951 0.6498 14 6 4.3626 -6.1397 1.5019 15 6 4.0420 -7.5829 1.1079 16 8 4.8086 -8.4786 1.9155 17 6 2.7307 -4.2301 1.1012 18 1 -0.4850 0.8400 0.0004 19 1 0.6241 -2.5568 -0.8903 20 1 0.6247 -2.5571 0.8897 21 1 2.5068 -3.9692 -2.1149 22 1 5.4248 -5.9487 1.3490 23 1 4.1132 -5.9857 2.5517 24 1 2.9798 -7.7740 1.2608 25 1 4.2914 -7.7369 0.0580 26 1 4.6560 -9.4133 1.7197 27 1 2.5227 -3.9924 2.1340 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238684290.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:18 Heat of formation + Delta-G solvation = -7.810889 kcal Electronic energy + Delta-G solvation = -11776.729837 eV Core-core repulsion = 9535.094209 eV Total energy + Delta-G solvation = -2241.635628 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.22698 -36.83075 -34.21653 -32.51907 -31.10139 -28.15244 -26.75738 -23.34544 -22.66546 -20.25790 -19.22760 -17.28863 -16.82961 -15.92076 -15.09605 -14.48905 -14.38697 -13.62122 -13.37904 -13.03606 -12.45078 -12.15528 -11.75235 -11.59692 -11.20178 -10.97378 -10.95359 -10.38569 -9.96807 -9.79268 -9.24698 -8.74615 -8.56710 -7.63593 -6.37784 -4.46224 2.91926 3.13712 3.22265 3.28055 3.71426 3.93809 4.22920 4.49744 4.97619 5.15930 5.43015 5.53554 5.73678 5.81554 6.01275 6.10478 6.31385 6.46620 6.56995 6.86779 7.32628 7.52110 7.58123 7.71538 7.75888 8.09953 8.61959 8.82883 9.22394 10.70513 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.076667 B = 0.006916 C = 0.006772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.130338 B = 4047.776077 C = 4133.736896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.066 3.934 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.544 4.544 8 H 0.066 0.934 9 C 0.230 3.770 10 N -0.424 5.424 11 C 0.176 3.824 12 N -0.511 5.511 13 C -0.030 4.030 14 C -0.021 4.021 15 C 0.084 3.916 16 O -0.581 6.581 17 C -0.039 4.039 18 H 0.268 0.732 19 H 0.051 0.949 20 H 0.048 0.952 21 H 0.195 0.805 22 H 0.072 0.928 23 H 0.074 0.926 24 H 0.042 0.958 25 H 0.053 0.947 26 H 0.375 0.625 27 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.514 -8.978 1.471 9.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.734 3.266 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.582 4.582 8 H 0.085 0.915 9 C 0.111 3.889 10 N -0.101 5.101 11 C -0.107 4.107 12 N -0.231 5.231 13 C -0.161 4.161 14 C -0.060 4.060 15 C 0.006 3.994 16 O -0.387 6.387 17 C -0.177 4.177 18 H 0.078 0.922 19 H 0.069 0.931 20 H 0.066 0.934 21 H 0.212 0.788 22 H 0.090 0.910 23 H 0.092 0.908 24 H 0.060 0.940 25 H 0.071 0.929 26 H 0.221 0.779 27 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 3.859 -8.638 1.187 9.535 hybrid contribution -0.439 1.164 0.199 1.260 sum 3.420 -7.474 1.385 8.336 Atomic orbital electron populations 1.69928 1.06117 1.27753 1.48910 1.24963 0.94986 0.99679 0.94172 0.86278 0.80066 0.82325 0.77922 1.19475 1.20554 1.20577 1.21355 0.93828 0.89682 1.53361 0.91530 1.19813 0.87182 0.82018 0.99918 1.46048 1.32736 1.25719 1.05627 1.24654 0.97724 0.94143 0.94165 1.70000 1.20659 1.21265 1.11144 1.20161 1.03857 1.01060 0.91005 1.19497 0.98950 0.90139 0.97365 1.22141 0.93751 0.89530 0.93957 1.86437 1.68872 1.19555 1.63790 1.22362 1.02844 0.99203 0.93329 0.92194 0.93085 0.93365 0.78797 0.90954 0.90771 0.94004 0.92888 0.77889 0.81972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.39 13.29 55.43 0.74 -23.65 15 2 C 0.07 1.75 5.46 -17.82 -0.10 1.65 15 3 Si 0.91 20.55 29.54 -169.99 -5.02 15.53 15 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 15 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 15 6 H -0.28 -6.27 7.11 56.52 0.40 -5.86 15 7 C -0.54 -14.40 9.39 -34.44 -0.32 -14.72 15 8 H 0.07 1.82 7.81 -52.49 -0.41 1.41 15 9 C 0.23 5.52 5.90 -5.19 -0.03 5.49 15 10 N -0.42 -9.21 2.73 -119.87 -0.33 -9.54 15 11 C 0.18 3.60 12.56 -90.37 -1.14 2.46 15 12 N -0.51 -10.46 11.23 -10.88 -0.12 -10.59 15 13 C -0.03 -0.58 6.36 -82.85 -0.53 -1.11 15 14 C -0.02 -0.33 6.15 -27.88 -0.17 -0.51 15 15 C 0.08 1.19 7.02 37.16 0.26 1.45 15 16 O -0.58 -7.54 13.66 -35.23 -0.48 -8.02 15 17 C -0.04 -0.79 11.46 -16.56 -0.19 -0.98 15 18 H 0.27 6.93 8.31 -40.82 -0.34 6.59 15 19 H 0.05 1.25 8.14 -51.93 -0.42 0.82 15 20 H 0.05 1.20 8.14 -51.93 -0.42 0.77 15 21 H 0.20 3.41 8.06 -52.49 -0.42 2.99 15 22 H 0.07 1.16 8.14 -51.93 -0.42 0.74 15 23 H 0.07 1.08 8.11 -51.93 -0.42 0.66 15 24 H 0.04 0.58 8.14 -51.93 -0.42 0.15 15 25 H 0.05 0.78 8.14 -51.93 -0.42 0.36 15 26 H 0.38 2.98 9.12 45.56 0.42 3.39 15 27 H 0.16 2.90 8.06 -52.49 -0.42 2.48 15 LS Contribution 246.24 15.07 3.71 3.71 Total: -1.00 -29.69 246.24 -6.23 -35.92 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -2.51 Total: 2.90 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -2.21 Total: -6.26 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: 0.29 Total: -43.77 kcal Atomic # 8 Polarization: -7.54 SS G_CDS: -0.48 Total: -8.02 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -29.69 -6.23 -35.92 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238684290.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.110 kcal (2) G-P(sol) polarization free energy of solvation -29.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds