Wall clock time and date at job start Mon Mar 30 2020 02:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00067 * 2 1 4 4 H 1.48498 * 109.47256 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46975 * 300.00190 * 3 2 1 6 6 H 1.48502 * 109.47007 * 60.00287 * 3 2 1 7 7 C 1.37875 * 119.99818 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99831 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00343 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47295 * 180.02562 * 9 7 2 11 11 C 1.35041 * 126.39322 * 269.95696 * 10 9 7 12 12 N 1.30503 * 108.69928 * 180.02562 * 11 10 9 13 13 C 1.34124 * 109.25583 * 0.02562 * 12 11 10 14 14 C 1.50698 * 125.99348 * 180.02562 * 13 12 11 15 15 C 1.53001 * 109.46879 * 304.99636 * 14 13 12 16 16 O 1.42902 * 109.46904 * 179.97438 * 15 14 13 17 17 C 1.34675 * 108.02139 * 359.97438 * 13 12 11 18 18 H 0.96997 * 119.99774 * 359.97438 * 1 2 3 19 19 H 1.08996 * 109.47112 * 60.00005 * 9 7 2 20 20 H 1.09002 * 109.46967 * 300.00003 * 9 7 2 21 21 H 1.07997 * 125.65385 * 0.05440 * 11 10 9 22 22 H 1.09002 * 109.47034 * 64.99474 * 14 13 12 23 23 H 1.08993 * 109.47516 * 184.99697 * 14 13 12 24 24 H 1.08997 * 109.47603 * 299.99749 * 15 14 13 25 25 H 1.09007 * 109.47118 * 59.99845 * 15 14 13 26 26 H 0.96710 * 113.99814 * 180.02562 * 16 15 14 27 27 H 1.07999 * 126.59056 * 179.74167 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.7231 -4.2222 -1.0876 12 7 3.5308 -5.1674 -0.6909 13 6 3.5546 -5.1951 0.6498 14 6 4.3626 -6.1397 1.5019 15 6 4.0420 -7.5829 1.1079 16 8 4.8086 -8.4786 1.9155 17 6 2.7307 -4.2301 1.1012 18 1 -0.4850 0.8400 0.0004 19 1 0.6241 -2.5568 -0.8903 20 1 0.6247 -2.5571 0.8897 21 1 2.5068 -3.9692 -2.1149 22 1 5.4248 -5.9487 1.3490 23 1 4.1132 -5.9857 2.5517 24 1 2.9798 -7.7740 1.2608 25 1 4.2914 -7.7369 0.0580 26 1 4.6560 -9.4133 1.7197 27 1 2.5227 -3.9924 2.1340 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238684290.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:17 Heat of formation + Delta-G solvation = -27.148995 kcal Electronic energy + Delta-G solvation = -11777.568400 eV Core-core repulsion = 9535.094209 eV Total energy + Delta-G solvation = -2242.474191 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.82142 -37.90168 -36.01924 -34.26100 -32.58500 -29.83168 -28.43248 -25.19901 -23.98068 -21.87852 -20.72820 -18.88998 -18.38188 -17.56851 -16.46832 -16.15941 -15.90765 -15.09750 -14.84376 -14.51348 -14.22529 -13.73190 -13.54301 -12.96137 -12.89986 -12.73889 -12.30365 -12.19492 -11.81583 -10.98842 -10.80907 -10.68818 -10.28502 -9.19706 -8.39090 -6.55265 1.30744 1.36157 1.40470 1.51411 2.16367 2.24592 2.38559 2.93965 3.41109 3.77738 4.17966 4.28068 4.35343 4.40282 4.59832 4.74389 4.85716 4.89839 5.10313 5.18078 5.51156 5.70336 5.76836 5.95447 6.36173 6.63247 6.93471 7.17185 7.24548 8.69033 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.076667 B = 0.006916 C = 0.006772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.130338 B = 4047.776077 C = 4133.736896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.023 3.977 3 Si 0.971 3.029 4 H -0.273 1.273 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.560 4.560 8 H 0.054 0.946 9 C 0.244 3.756 10 N -0.436 5.436 11 C 0.168 3.832 12 N -0.521 5.521 13 C -0.026 4.026 14 C -0.022 4.022 15 C 0.094 3.906 16 O -0.590 6.590 17 C -0.059 4.059 18 H 0.273 0.727 19 H 0.043 0.957 20 H 0.036 0.964 21 H 0.216 0.784 22 H 0.071 0.929 23 H 0.088 0.912 24 H 0.046 0.954 25 H 0.046 0.954 26 H 0.398 0.602 27 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.184 -9.119 1.738 10.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.179 4.179 3 Si 0.795 3.205 4 H -0.197 1.197 5 H -0.197 1.197 6 H -0.198 1.198 7 C -0.597 4.597 8 H 0.072 0.928 9 C 0.124 3.876 10 N -0.115 5.115 11 C -0.115 4.115 12 N -0.241 5.241 13 C -0.156 4.156 14 C -0.061 4.061 15 C 0.016 3.984 16 O -0.399 6.399 17 C -0.195 4.195 18 H 0.083 0.917 19 H 0.061 0.939 20 H 0.054 0.946 21 H 0.232 0.768 22 H 0.089 0.911 23 H 0.107 0.893 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.248 0.752 27 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 4.538 -8.823 1.460 10.028 hybrid contribution -0.624 1.117 0.124 1.285 sum 3.914 -7.706 1.584 8.787 Atomic orbital electron populations 1.70002 1.07315 1.28858 1.49337 1.25733 0.95766 1.02781 0.93575 0.85306 0.78491 0.78390 0.78306 1.19708 1.19721 1.19824 1.21518 0.93357 0.91098 1.53776 0.92800 1.19435 0.87184 0.82145 0.98821 1.45966 1.33114 1.25717 1.06657 1.25182 0.97459 0.93931 0.94900 1.70052 1.20807 1.21354 1.11928 1.20645 1.03223 1.00936 0.90808 1.19582 0.98224 0.90701 0.97571 1.21899 0.94065 0.88831 0.93597 1.86378 1.68700 1.21267 1.63547 1.22783 1.03316 0.99544 0.93842 0.91742 0.93864 0.94609 0.76806 0.91089 0.89318 0.93541 0.93581 0.75239 0.80439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.04 13.29 21.45 0.28 -49.75 15 2 C 0.02 1.20 5.46 84.65 0.46 1.66 15 3 Si 0.97 41.62 29.54 68.60 2.03 43.65 15 4 H -0.27 -11.68 7.11 99.48 0.71 -10.97 15 5 H -0.27 -11.26 7.11 99.48 0.71 -10.56 15 6 H -0.27 -11.34 7.11 99.48 0.71 -10.63 15 7 C -0.56 -29.64 9.39 25.60 0.24 -29.40 15 8 H 0.05 2.94 7.81 -2.91 -0.02 2.92 15 9 C 0.24 11.85 5.90 85.63 0.51 12.35 15 10 N -0.44 -18.86 2.73 -533.15 -1.46 -20.32 15 11 C 0.17 6.75 12.56 180.26 2.26 9.01 15 12 N -0.52 -20.84 11.23 -188.32 -2.12 -22.96 15 13 C -0.03 -0.97 6.36 41.39 0.26 -0.71 15 14 C -0.02 -0.67 6.15 29.85 0.18 -0.49 15 15 C 0.09 2.49 7.02 71.98 0.51 2.99 15 16 O -0.59 -13.85 13.66 -148.98 -2.04 -15.89 15 17 C -0.06 -2.31 11.46 83.09 0.95 -1.36 15 18 H 0.27 13.95 8.31 -92.71 -0.77 13.18 15 19 H 0.04 2.14 8.14 -2.39 -0.02 2.12 15 20 H 0.04 1.80 8.14 -2.39 -0.02 1.79 15 21 H 0.22 7.37 8.06 -2.91 -0.02 7.34 15 22 H 0.07 2.17 8.14 -2.39 -0.02 2.15 15 23 H 0.09 2.40 8.11 -2.39 -0.02 2.38 15 24 H 0.05 1.18 8.14 -2.39 -0.02 1.16 15 25 H 0.05 1.28 8.14 -2.38 -0.02 1.26 15 26 H 0.40 5.25 9.12 -74.05 -0.68 4.57 15 27 H 0.18 6.21 8.06 -2.91 -0.02 6.18 15 Total: -1.00 -60.89 246.24 2.57 -58.32 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: 0.49 Total: 12.89 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: 5.38 Total: -5.94 kcal Atomic # 7 Polarization: -89.74 SS G_CDS: -3.29 Total: -93.03 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -2.04 Total: -15.89 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Total: -60.89 2.57 -58.32 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238684290.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.171 kcal (2) G-P(sol) polarization free energy of solvation -60.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds