Wall clock time and date at job start Mon Mar 30 2020 02:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31544 * 1 3 3 Si 1.86801 * 119.99787 * 2 1 4 4 H 1.48494 * 109.47644 * 270.00646 * 3 2 1 5 5 H 1.48506 * 109.47143 * 30.00592 * 3 2 1 6 6 H 1.48501 * 109.47120 * 150.00307 * 3 2 1 7 7 C 1.38695 * 120.00364 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99849 * 359.71984 * 7 2 1 9 9 O 1.34774 * 120.00194 * 179.97438 * 7 2 1 10 10 N 1.21799 * 116.99970 * 179.72486 * 9 7 2 11 11 C 1.27980 * 119.99864 * 180.02562 * 10 9 7 12 12 C 1.52236 * 128.05946 * 359.67510 * 11 10 9 13 13 N 1.49536 * 105.57784 * 180.25774 * 12 11 10 14 14 C 1.49575 * 105.51190 * 71.67384 * 13 12 11 15 15 C 1.54686 * 105.09530 * 289.79383 * 14 13 12 16 16 C 1.53836 * 128.06222 * 179.97438 * 11 10 9 17 17 H 1.08999 * 116.60875 * 340.11010 * 16 11 10 18 18 C 1.50528 * 101.71442 * 325.54466 * 13 12 11 19 19 H 0.96995 * 120.00191 * 359.97438 * 1 2 3 20 20 H 1.09007 * 110.22599 * 299.40809 * 12 11 10 21 21 H 1.08996 * 110.22884 * 61.36069 * 12 11 10 22 22 H 1.08998 * 110.31437 * 170.89615 * 14 13 12 23 23 H 1.08993 * 110.32014 * 48.69844 * 14 13 12 24 24 H 1.09000 * 110.67751 * 240.57718 * 15 14 13 25 25 H 1.09005 * 110.67631 * 117.41287 * 15 14 13 26 26 H 1.08996 * 111.96713 * 296.85110 * 18 13 12 27 27 H 1.08998 * 111.97034 * 170.48351 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2494 1.6178 0.0000 4 1 2.4968 2.0466 -1.4000 5 1 1.4468 2.6527 0.7002 6 1 3.5470 1.4402 0.7000 7 6 2.0090 -1.2011 -0.0005 8 1 1.4690 -2.1365 0.0036 9 8 3.3567 -1.2010 -0.0011 10 7 3.9097 -2.2863 0.0037 11 6 5.1878 -2.3532 0.0040 12 6 6.1877 -1.2053 -0.0078 13 7 7.5376 -1.8486 -0.0082 14 6 7.6987 -2.4394 -1.3728 15 6 6.7112 -3.6293 -1.4158 16 6 6.0716 -3.6123 0.0101 17 1 5.6020 -4.5368 0.3461 18 6 7.2937 -3.0713 0.8353 19 1 -0.4850 0.8400 0.0004 20 1 6.0562 -0.6002 -0.9049 21 1 6.0658 -0.5902 0.8837 22 1 8.7207 -2.7906 -1.5149 23 1 7.4403 -1.7055 -2.1360 24 1 7.2432 -4.5650 -1.5879 25 1 5.9510 -3.4711 -2.1808 26 1 7.0136 -2.8129 1.8564 27 1 8.1391 -3.7589 0.8106 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000256014130.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:09 Heat of formation + Delta-G solvation = 31.268413 kcal Electronic energy + Delta-G solvation = -12425.643693 eV Core-core repulsion = 10185.702671 eV Total energy + Delta-G solvation = -2239.941023 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.30263 -41.11946 -35.19829 -33.52153 -31.43891 -29.77537 -28.20006 -26.29308 -22.54632 -22.07469 -20.59251 -20.35082 -18.29170 -17.20962 -17.06057 -16.65486 -15.82063 -15.48319 -15.04015 -14.50729 -14.00732 -13.19460 -12.97752 -12.81055 -12.74773 -12.68560 -12.28197 -12.18084 -11.98508 -11.56202 -11.15259 -10.79445 -9.90028 -9.73740 -8.56367 -6.32877 1.25088 1.27494 1.45176 1.49245 2.21343 2.60123 2.84882 3.01696 3.74576 3.77771 3.90887 4.00517 4.24344 4.29220 4.42819 4.67411 4.80380 4.90815 4.95585 5.00067 5.04100 5.07265 5.42107 5.58045 5.59794 5.80343 6.57830 6.74514 8.23978 8.57603 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.061750 B = 0.010080 C = 0.009324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.332918 B = 2777.036186 C = 3002.127574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.019 3.981 3 Si 0.970 3.030 4 H -0.262 1.262 5 H -0.259 1.259 6 H -0.264 1.264 7 C -0.395 4.395 8 H 0.061 0.939 9 O -0.054 6.054 10 N -0.358 5.358 11 C -0.047 4.047 12 C 0.035 3.965 13 N -0.464 5.464 14 C 0.010 3.990 15 C -0.136 4.136 16 C -0.055 4.055 17 H 0.119 0.881 18 C 0.022 3.978 19 H 0.289 0.711 20 H 0.067 0.933 21 H 0.071 0.929 22 H 0.115 0.885 23 H 0.066 0.934 24 H 0.109 0.891 25 H 0.049 0.951 26 H 0.081 0.919 27 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.141 -3.904 -1.152 16.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.181 4.181 3 Si 0.791 3.209 4 H -0.186 1.186 5 H -0.183 1.183 6 H -0.189 1.189 7 C -0.472 4.472 8 H 0.079 0.921 9 O -0.103 6.103 10 N -0.079 5.079 11 C -0.230 4.230 12 C -0.097 4.097 13 N -0.184 5.184 14 C -0.119 4.119 15 C -0.176 4.176 16 C -0.076 4.076 17 H 0.137 0.863 18 C -0.106 4.106 19 H 0.099 0.901 20 H 0.086 0.914 21 H 0.089 0.911 22 H 0.133 0.867 23 H 0.085 0.915 24 H 0.128 0.872 25 H 0.068 0.932 26 H 0.100 0.900 27 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 15.919 -3.731 -0.954 16.378 hybrid contribution -0.939 0.633 -0.311 1.174 sum 14.980 -3.098 -1.265 15.349 Atomic orbital electron populations 1.69706 1.06811 1.29918 1.49603 1.25158 0.95877 1.01896 0.95159 0.85243 0.78721 0.77266 0.79652 1.18621 1.18296 1.18860 1.20601 0.76639 0.95740 1.54199 0.92089 1.82971 1.21802 1.23060 1.82443 1.69378 1.10397 1.17245 1.10927 1.26117 0.88508 0.99860 1.08548 1.22704 0.89106 0.96230 1.01657 1.70168 1.22497 1.18122 1.07636 1.23750 1.01143 0.95776 0.91232 1.23189 0.98413 1.00978 0.94973 1.23258 0.93141 0.93709 0.97489 0.86267 1.24643 0.96614 0.92059 0.97328 0.90137 0.91424 0.91097 0.86713 0.91508 0.87246 0.93177 0.90014 0.85290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.55 13.96 21.62 0.30 -55.25 15 2 C 0.02 1.12 5.49 84.85 0.47 1.58 15 3 Si 0.97 45.21 28.62 68.60 1.96 47.18 15 4 H -0.26 -11.63 7.11 99.48 0.71 -10.92 15 5 H -0.26 -11.11 7.11 99.48 0.71 -10.40 15 6 H -0.26 -12.31 7.11 99.48 0.71 -11.60 15 7 C -0.39 -24.42 10.60 67.93 0.72 -23.70 15 8 H 0.06 4.12 8.06 -2.91 -0.02 4.10 15 9 O -0.05 -3.08 8.40 63.34 0.53 -2.55 15 10 N -0.36 -18.41 10.53 -37.59 -0.40 -18.81 15 11 C -0.05 -1.92 6.73 48.06 0.32 -1.60 15 12 C 0.03 1.27 6.12 85.54 0.52 1.79 15 13 N -0.46 -12.97 6.99 -861.04 -6.02 -18.99 15 14 C 0.01 0.22 6.61 86.36 0.57 0.79 15 15 C -0.14 -3.23 6.33 32.31 0.20 -3.02 15 16 C -0.06 -1.59 5.36 -7.94 -0.04 -1.63 15 17 H 0.12 3.21 8.14 -2.39 -0.02 3.19 15 18 C 0.02 0.53 6.79 87.02 0.59 1.12 15 19 H 0.29 15.79 8.31 -92.71 -0.77 15.02 15 20 H 0.07 2.55 7.68 -2.38 -0.02 2.54 15 21 H 0.07 2.74 8.14 -2.39 -0.02 2.72 15 22 H 0.11 1.91 8.14 -2.39 -0.02 1.89 15 23 H 0.07 1.64 7.69 -2.39 -0.02 1.62 15 24 H 0.11 1.82 8.14 -2.39 -0.02 1.80 15 25 H 0.05 1.42 8.03 -2.38 -0.02 1.40 15 26 H 0.08 2.05 8.14 -2.39 -0.02 2.03 15 27 H 0.13 2.10 8.14 -2.39 -0.02 2.08 15 Total: -1.00 -68.53 232.46 0.89 -67.64 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: 1.15 Total: 5.46 kcal Atomic # 6 Polarization: -28.02 SS G_CDS: 3.36 Total: -24.67 kcal Atomic # 7 Polarization: -86.94 SS G_CDS: -6.11 Total: -93.05 kcal Atomic # 8 Polarization: -3.08 SS G_CDS: 0.53 Total: -2.55 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.96 Total: 47.18 kcal Total: -68.53 0.89 -67.64 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000256014130.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.907 kcal (2) G-P(sol) polarization free energy of solvation -68.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds