Wall clock time and date at job start Mon Mar 30 2020 02:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35754 * 116.99767 * 2 1 4 4 N 1.35131 * 126.19765 * 0.02562 * 3 2 1 5 5 H 0.96995 * 126.03781 * 359.97225 * 4 3 2 6 6 N 1.40067 * 107.92992 * 180.02562 * 4 3 2 7 7 C 1.30838 * 108.34092 * 359.97438 * 6 4 3 8 8 C 1.50701 * 125.85855 * 179.97438 * 7 6 4 9 9 C 1.35953 * 126.18973 * 179.71546 * 3 2 1 10 10 C 1.50701 * 126.08288 * 359.95852 * 9 3 2 11 11 C 1.50706 * 109.46667 * 90.02964 * 10 9 3 12 12 H 1.07997 * 119.99897 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99728 * 180.02562 * 11 10 9 14 14 N 1.31519 * 119.99951 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 119.99959 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.47123 * 89.99941 * 15 13 11 17 17 H 1.48502 * 109.47049 * 209.99535 * 15 13 11 18 18 H 1.48493 * 109.47237 * 329.99952 * 15 13 11 19 19 H 1.09002 * 109.47382 * 300.00330 * 1 2 3 20 20 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.46926 * 60.00437 * 1 2 3 22 22 H 1.09000 * 109.46786 * 89.98155 * 8 7 6 23 23 H 1.08997 * 109.47148 * 209.98042 * 8 7 6 24 24 H 1.08998 * 109.47249 * 329.98319 * 8 7 6 25 25 H 1.08998 * 109.47019 * 210.02757 * 10 9 3 26 26 H 1.08993 * 109.47133 * 330.03077 * 10 9 3 27 27 H 0.96993 * 119.99838 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 7 1.4359 2.4157 0.0005 5 1 0.4785 2.5713 0.0005 6 7 2.4309 3.4015 -0.0003 7 6 3.5975 2.8091 -0.0007 8 6 4.9376 3.4983 -0.0021 9 6 3.3874 1.4268 0.0054 10 6 4.4580 0.3663 0.0135 11 6 4.8218 0.0092 -1.4048 12 1 4.3275 0.5013 -2.2293 13 6 5.7858 -0.9458 -1.6495 14 7 6.3881 -1.5446 -0.6454 15 14 6.2363 -1.3890 -3.4073 16 1 7.3413 -0.5120 -3.8713 17 1 6.6730 -2.8072 -3.4638 18 1 5.0529 -1.2001 -4.2842 19 1 -0.3634 0.5139 0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 -0.8901 22 1 5.2612 3.6655 1.0252 23 1 5.6675 2.8726 -0.5157 24 1 4.8534 4.4554 -0.5168 25 1 5.3399 0.7443 0.5306 26 1 4.0874 -0.5203 0.5277 27 1 7.0665 -2.2161 -0.8176 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259512213.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:02 Heat of formation + Delta-G solvation = 3.179022 kcal Electronic energy + Delta-G solvation = -12289.301603 eV Core-core repulsion = 10048.142533 eV Total energy + Delta-G solvation = -2241.159070 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.36293 -39.13558 -35.47727 -33.68242 -32.08542 -29.08347 -28.72605 -27.46685 -24.79579 -21.69534 -20.59391 -19.51195 -18.39991 -17.05780 -16.71263 -16.53502 -15.70950 -15.24955 -14.32450 -14.08956 -13.88894 -13.54893 -13.40356 -13.04991 -12.80307 -12.60442 -12.47746 -12.22158 -11.86951 -11.49136 -11.21925 -10.48719 -10.00534 -8.91488 -8.06215 -6.19196 0.95220 1.42696 1.44421 1.54910 1.69922 1.90171 2.39026 2.49493 3.21299 3.71555 4.12022 4.23125 4.39814 4.53922 4.65878 4.90705 4.91697 5.10431 5.24834 5.40816 5.56228 5.74211 5.87456 5.98074 6.36032 6.72357 6.79562 6.91864 7.47571 9.00992 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.033461 B = 0.012152 C = 0.010075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.597466 B = 2303.555054 C = 2778.619234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.311 6.311 3 C 0.264 3.736 4 N -0.496 5.496 5 H 0.446 0.554 6 N -0.311 5.311 7 C 0.096 3.904 8 C -0.068 4.068 9 C -0.253 4.253 10 C 0.109 3.891 11 C -0.515 4.515 12 H 0.045 0.955 13 C 0.004 3.996 14 N -0.932 5.932 15 Si 0.959 3.041 16 H -0.269 1.269 17 H -0.281 1.281 18 H -0.272 1.272 19 H 0.073 0.927 20 H 0.126 0.874 21 H 0.068 0.932 22 H 0.089 0.911 23 H 0.070 0.930 24 H 0.089 0.911 25 H 0.008 0.992 26 H -0.010 1.010 27 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.125 5.990 0.657 11.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.217 6.217 3 C 0.095 3.905 4 N -0.220 5.220 5 H 0.293 0.707 6 N -0.140 5.140 7 C -0.069 4.069 8 C -0.126 4.126 9 C -0.264 4.264 10 C 0.071 3.929 11 C -0.553 4.553 12 H 0.063 0.937 13 C -0.193 4.193 14 N -0.573 5.573 15 Si 0.784 3.216 16 H -0.194 1.194 17 H -0.206 1.206 18 H -0.197 1.197 19 H 0.091 0.909 20 H 0.144 0.856 21 H 0.086 0.914 22 H 0.108 0.892 23 H 0.089 0.911 24 H 0.108 0.892 25 H 0.027 0.973 26 H 0.008 0.992 27 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.533 6.621 0.697 12.460 hybrid contribution -0.115 -1.258 -0.693 1.441 sum -10.648 5.363 0.004 11.923 Atomic orbital electron populations 1.23468 0.75937 1.06843 1.02526 1.86407 1.23815 1.21861 1.89579 1.19280 0.91309 0.79495 1.00412 1.46227 1.09395 1.02050 1.64348 0.70720 1.77125 0.95559 1.11241 1.30080 1.22345 0.95788 0.91461 0.97330 1.20223 0.88771 0.99897 1.03755 1.19740 0.91859 0.95977 1.18851 1.17159 0.90285 0.89905 0.95523 1.21399 1.20188 1.20921 0.92804 0.93716 1.25853 0.96188 0.96027 1.01257 1.70082 1.27034 1.27521 1.32613 0.85537 0.78575 0.77544 0.79906 1.19399 1.20616 1.19668 0.90858 0.85563 0.91354 0.89203 0.91072 0.89235 0.97344 0.99178 0.92794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 10.31 113.37 1.17 1.31 15 2 O -0.31 -11.93 10.52 -90.80 -0.96 -12.88 15 3 C 0.26 10.85 7.76 83.65 0.65 11.50 15 4 N -0.50 -16.67 7.12 -169.18 -1.20 -17.87 15 5 H 0.45 10.65 8.31 -213.35 -1.77 8.88 15 6 N -0.31 -11.80 12.69 -47.41 -0.60 -12.40 15 7 C 0.10 3.99 7.21 43.09 0.31 4.31 15 8 C -0.07 -2.35 10.12 71.24 0.72 -1.63 15 9 C -0.25 -12.09 5.31 -20.01 -0.11 -12.20 15 10 C 0.11 6.17 5.10 29.10 0.15 6.32 15 11 C -0.51 -30.55 9.09 25.60 0.23 -30.32 15 12 H 0.04 2.65 7.74 -2.91 -0.02 2.63 15 13 C 0.00 0.24 5.46 84.65 0.46 0.70 15 14 N -0.93 -57.37 13.29 21.45 0.28 -57.08 15 15 Si 0.96 45.42 29.54 68.60 2.03 47.44 15 16 H -0.27 -12.14 7.11 99.48 0.71 -11.44 15 17 H -0.28 -12.89 7.11 99.48 0.71 -12.19 15 18 H -0.27 -12.59 7.11 99.48 0.71 -11.88 15 19 H 0.07 1.29 8.14 -2.39 -0.02 1.27 15 20 H 0.13 2.27 8.14 -2.39 -0.02 2.26 15 21 H 0.07 1.29 8.14 -2.38 -0.02 1.27 15 22 H 0.09 2.72 8.14 -2.39 -0.02 2.71 15 23 H 0.07 2.74 7.95 -2.39 -0.02 2.72 15 24 H 0.09 2.59 8.14 -2.39 -0.02 2.57 15 25 H 0.01 0.48 7.95 -2.39 -0.02 0.47 15 26 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 15 27 H 0.26 15.17 8.31 -92.71 -0.77 14.40 15 Total: -1.00 -72.32 243.95 2.54 -69.78 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -0.60 Total: 3.02 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: 3.59 Total: -20.01 kcal Atomic # 7 Polarization: -85.83 SS G_CDS: -1.52 Total: -87.35 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: -0.96 Total: -12.88 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -72.32 2.54 -69.78 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259512213.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.964 kcal (2) G-P(sol) polarization free energy of solvation -72.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds