Wall clock time and date at job start Mon Mar 30 2020 02:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 114.00019 * 2 1 4 4 C 1.52999 * 109.46771 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47160 * 305.32796 * 4 3 2 6 6 C 1.50692 * 109.47475 * 65.33684 * 4 3 2 7 7 H 1.08001 * 120.00259 * 35.02314 * 6 4 3 8 8 C 1.37880 * 119.99924 * 215.02443 * 6 4 3 9 9 N 1.31515 * 120.00341 * 4.44801 * 8 6 4 10 10 Si 1.86806 * 119.99923 * 184.45152 * 8 6 4 11 11 H 1.48495 * 109.47068 * 89.99736 * 10 8 6 12 12 H 1.48498 * 109.46835 * 209.99827 * 10 8 6 13 13 H 1.48501 * 109.47015 * 329.99621 * 10 8 6 14 14 C 1.50705 * 109.47054 * 185.33858 * 4 3 2 15 15 C 1.39871 * 126.03554 * 299.69134 * 14 4 3 16 16 N 1.30833 * 108.20279 * 179.81807 * 15 14 4 17 17 N 1.40095 * 108.20406 * 0.43603 * 16 15 14 18 18 H 0.96996 * 126.03765 * 179.70026 * 17 16 15 19 19 C 1.34943 * 107.92327 * 359.71961 * 17 16 15 20 20 H 1.08997 * 109.47472 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46683 * 299.99424 * 1 2 3 22 22 H 1.09001 * 109.47230 * 59.99353 * 1 2 3 23 23 H 1.09004 * 109.46653 * 60.00632 * 3 2 1 24 24 H 1.08999 * 109.47387 * 300.00672 * 3 2 1 25 25 H 0.97003 * 120.00237 * 180.02562 * 9 8 6 26 26 H 1.07999 * 125.90273 * 359.97438 * 15 14 4 27 27 H 1.07997 * 126.13014 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8511 0.5633 0.8375 6 6 3.9889 0.5541 -1.2920 7 1 3.4615 0.7654 -2.2105 8 6 5.0771 -0.2925 -1.3011 9 7 5.6657 -0.6191 -0.1712 10 14 5.7157 -0.9756 -2.9182 11 1 6.7403 -0.0557 -3.4740 12 1 6.3229 -2.3108 -2.6862 13 1 4.5914 -1.1035 -3.8799 14 6 4.1481 2.5551 0.1316 15 6 3.9775 3.6218 -0.7569 16 7 4.6596 4.6429 -0.3053 17 7 5.2947 4.2546 0.8814 18 1 5.8702 4.8110 1.4292 19 6 4.9649 2.9695 1.1276 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 1.6887 1.8463 0.8901 24 1 1.6886 1.8465 -0.8899 25 1 6.4315 -1.2144 -0.1776 26 1 3.3833 3.6062 -1.6586 27 1 5.2936 2.3777 1.9691 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259550765.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:11 Heat of formation + Delta-G solvation = 2.139974 kcal Electronic energy + Delta-G solvation = -12307.527506 eV Core-core repulsion = 10066.323380 eV Total energy + Delta-G solvation = -2241.204126 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.79611 -38.56931 -35.51642 -33.04108 -31.86413 -29.32852 -27.43908 -26.15009 -23.09658 -22.65614 -20.63622 -18.91600 -17.75685 -17.00912 -16.47863 -16.26221 -15.47640 -15.13124 -15.01674 -14.24084 -13.95003 -13.40011 -13.17649 -12.74575 -12.61067 -12.47827 -12.06698 -11.63266 -11.26792 -10.92567 -10.47954 -10.31943 -10.25013 -9.03700 -8.00693 -6.05129 1.18510 1.44217 1.45231 1.54338 2.17205 2.28636 2.51885 3.23851 3.40763 4.19827 4.38204 4.53322 4.59138 4.71879 4.73656 4.90967 4.94532 5.09141 5.17016 5.53539 5.76483 5.87621 6.07516 6.41063 6.67718 6.68521 6.97978 7.06822 7.57339 9.07644 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.021477 B = 0.017066 C = 0.011027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.388902 B = 1640.304479 C = 2538.556893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.409 6.409 3 C 0.088 3.912 4 C 0.099 3.901 5 H 0.037 0.963 6 C -0.494 4.494 7 H 0.048 0.952 8 C 0.016 3.984 9 N -0.922 5.922 10 Si 0.943 3.057 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.268 1.268 14 C -0.201 4.201 15 C 0.048 3.952 16 N -0.330 5.330 17 N -0.476 5.476 18 H 0.447 0.553 19 C 0.043 3.957 20 H 0.091 0.909 21 H 0.047 0.953 22 H 0.043 0.957 23 H 0.035 0.965 24 H 0.038 0.962 25 H 0.257 0.743 26 H 0.183 0.817 27 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.795 5.391 2.339 7.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.328 6.328 3 C 0.012 3.988 4 C 0.079 3.921 5 H 0.055 0.945 6 C -0.533 4.533 7 H 0.067 0.933 8 C -0.182 4.182 9 N -0.562 5.562 10 Si 0.770 3.230 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.193 1.193 14 C -0.213 4.213 15 C -0.138 4.138 16 N -0.154 5.154 17 N -0.188 5.188 18 H 0.292 0.708 19 C -0.103 4.103 20 H 0.109 0.891 21 H 0.065 0.935 22 H 0.062 0.938 23 H 0.053 0.947 24 H 0.057 0.943 25 H 0.066 0.934 26 H 0.200 0.800 27 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -4.230 6.314 2.199 7.911 hybrid contribution 0.472 -0.974 -0.381 1.147 sum -3.758 5.340 1.818 6.778 Atomic orbital electron populations 1.22870 0.80993 1.03103 1.00221 1.87992 1.20165 1.29411 1.95275 1.22532 0.95391 0.83017 0.97864 1.17127 0.88839 0.88587 0.97498 0.94489 1.21189 1.12180 1.25747 0.94140 0.93341 1.25573 0.97422 0.96612 0.98583 1.70016 1.22709 1.36823 1.26684 0.85789 0.78529 0.77467 0.81236 1.20794 1.21259 1.19304 1.20659 1.06340 0.97798 0.96492 1.23800 0.99256 0.90658 1.00045 1.77035 1.15049 1.24216 0.99110 1.46073 1.41453 1.10378 1.20870 0.70757 1.22505 0.99693 0.86563 1.01541 0.89092 0.93483 0.93821 0.94701 0.94335 0.93411 0.80003 0.80089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.76 11.01 113.37 1.25 2.01 15 2 O -0.41 -17.99 10.46 -148.98 -1.56 -19.55 15 3 C 0.09 3.76 5.17 71.98 0.37 4.13 15 4 C 0.10 4.90 2.53 -12.29 -0.03 4.87 15 5 H 0.04 2.06 7.21 -2.39 -0.02 2.04 15 6 C -0.49 -27.05 7.93 25.60 0.20 -26.84 15 7 H 0.05 2.63 7.82 -2.91 -0.02 2.61 15 8 C 0.02 0.90 5.46 84.66 0.46 1.36 15 9 N -0.92 -53.90 12.77 21.45 0.27 -53.63 15 10 Si 0.94 44.80 29.54 68.60 2.03 46.83 15 11 H -0.28 -13.21 7.11 99.48 0.71 -12.51 15 12 H -0.29 -13.44 7.11 99.48 0.71 -12.74 15 13 H -0.27 -12.38 7.11 99.48 0.71 -11.67 15 14 C -0.20 -8.84 4.79 -20.14 -0.10 -8.94 15 15 C 0.05 1.95 11.63 85.24 0.99 2.94 15 16 N -0.33 -12.71 12.70 -57.02 -0.72 -13.43 15 17 N -0.48 -15.97 7.36 -57.59 -0.42 -16.39 15 18 H 0.45 10.99 8.96 -213.33 -1.91 9.08 15 19 C 0.04 1.66 11.88 83.54 0.99 2.65 15 20 H 0.09 2.46 8.14 -2.39 -0.02 2.44 15 21 H 0.05 1.26 8.14 -2.39 -0.02 1.24 15 22 H 0.04 1.22 8.14 -2.39 -0.02 1.20 15 23 H 0.03 1.34 8.14 -2.39 -0.02 1.32 15 24 H 0.04 1.55 8.14 -2.39 -0.02 1.53 15 25 H 0.26 14.40 8.31 -92.71 -0.77 13.63 15 26 H 0.18 6.74 8.06 -2.91 -0.02 6.72 15 27 H 0.18 6.27 8.06 -2.91 -0.02 6.25 15 Total: -1.00 -65.82 243.66 2.99 -62.83 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -0.75 Total: 11.15 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: 4.14 Total: -17.82 kcal Atomic # 7 Polarization: -82.57 SS G_CDS: -0.87 Total: -83.45 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -1.56 Total: -19.55 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -65.82 2.99 -62.83 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259550765.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.971 kcal (2) G-P(sol) polarization free energy of solvation -65.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds