Wall clock time and date at job start Mon Mar 30 2020 02:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30838 * 125.89929 * 2 1 4 4 N 1.40085 * 108.20757 * 179.97438 * 3 2 1 5 5 H 0.96995 * 126.03759 * 179.97438 * 4 3 2 6 6 C 1.34946 * 107.92553 * 359.76075 * 4 3 2 7 7 C 1.35321 * 107.74308 * 0.38326 * 6 4 3 8 8 C 1.50698 * 126.03870 * 179.87178 * 7 6 4 9 9 C 1.52999 * 109.47150 * 119.69383 * 8 7 6 10 10 O 1.42905 * 109.47321 * 359.69726 * 8 7 6 11 11 C 1.50697 * 109.47576 * 239.69481 * 8 7 6 12 12 H 1.08001 * 119.99890 * 0.02562 * 11 8 7 13 13 C 1.37876 * 120.00428 * 180.02562 * 11 8 7 14 14 N 1.31510 * 119.99600 * 0.02562 * 13 11 8 15 15 Si 1.86805 * 120.00227 * 180.02562 * 13 11 8 16 16 H 1.48499 * 109.46821 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46996 * 120.00312 * 15 13 11 18 18 H 1.48495 * 109.46665 * 239.99993 * 15 13 11 19 19 H 1.09001 * 109.47009 * 270.02366 * 1 2 3 20 20 H 1.09000 * 109.47208 * 30.02206 * 1 2 3 21 21 H 1.08998 * 109.47160 * 150.02632 * 1 2 3 22 22 H 1.07996 * 126.12885 * 180.24044 * 6 4 3 23 23 H 1.09001 * 109.47362 * 300.00765 * 9 8 7 24 24 H 1.09002 * 109.46716 * 60.00124 * 9 8 7 25 25 H 1.09000 * 109.47486 * 180.02562 * 9 8 7 26 26 H 0.96696 * 114.00036 * 299.99741 * 10 8 7 27 27 H 0.97006 * 120.00212 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2741 1.0598 0.0000 4 7 3.6087 0.6341 0.0006 5 1 4.3907 1.2080 0.0004 6 6 3.6142 -0.7153 0.0063 7 6 2.3271 -1.1330 0.0006 8 6 1.8599 -2.5657 0.0012 9 6 1.0161 -2.8264 1.2506 10 8 2.9931 -3.4363 0.0017 11 6 1.0288 -2.8237 -1.2291 12 1 0.8565 -2.0297 -1.9406 13 6 0.4883 -4.0733 -1.4465 14 7 0.6977 -5.0401 -0.5798 15 14 -0.5413 -4.3933 -2.9719 16 1 -0.6254 -3.1513 -3.7817 17 1 0.0902 -5.4680 -3.7789 18 1 -1.9066 -4.8149 -2.5680 19 1 -0.3633 0.0004 1.0277 20 1 -0.3633 0.8898 -0.5142 21 1 -0.3633 -0.8902 -0.5134 22 1 4.4891 -1.3485 0.0119 23 1 1.6171 -2.6398 2.1405 24 1 0.1517 -2.1624 1.2502 25 1 0.6785 -3.8628 1.2513 26 1 3.5741 -3.3261 -0.7633 27 1 0.3172 -5.9192 -0.7325 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259554927.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:57 Heat of formation + Delta-G solvation = 19.375158 kcal Electronic energy + Delta-G solvation = -12753.019237 eV Core-core repulsion = 10512.562484 eV Total energy + Delta-G solvation = -2240.456753 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.49851 -36.03126 -32.53041 -31.98912 -29.96026 -27.69923 -27.15452 -25.14231 -21.53016 -19.73638 -18.62807 -17.18247 -16.86218 -14.63393 -14.37717 -14.10097 -13.46885 -13.04496 -12.49551 -12.19189 -11.80040 -11.48670 -11.24602 -10.97383 -10.82812 -10.57767 -10.33187 -10.23840 -10.04871 -8.97600 -8.63605 -8.49365 -8.30130 -7.45201 -5.93038 -4.12113 2.58533 3.28773 3.37894 3.41215 3.54645 3.62777 4.43298 5.26552 5.48134 5.60936 6.01553 6.10535 6.32405 6.38983 6.67801 6.74291 6.86421 7.03052 7.21239 7.46551 7.66510 7.83550 7.96437 8.09845 8.33637 8.41905 8.89472 9.40609 9.64415 11.05994 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.042857 B = 0.013673 C = 0.012355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.178581 B = 2047.408280 C = 2265.762605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.091 3.909 3 N -0.320 5.320 4 N -0.495 5.495 5 H 0.428 0.572 6 C 0.031 3.969 7 C -0.208 4.208 8 C 0.315 3.685 9 C -0.119 4.119 10 O -0.561 6.561 11 C -0.547 4.547 12 H 0.057 0.943 13 C 0.080 3.920 14 N -0.858 5.858 15 Si 0.884 3.116 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.283 1.283 19 H 0.067 0.933 20 H 0.057 0.943 21 H 0.101 0.899 22 H 0.168 0.832 23 H 0.011 0.989 24 H 0.043 0.957 25 H 0.089 0.911 26 H 0.346 0.654 27 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.634 6.054 0.605 6.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.075 4.075 3 N -0.145 5.145 4 N -0.204 5.204 5 H 0.270 0.730 6 C -0.114 4.114 7 C -0.220 4.220 8 C 0.274 3.726 9 C -0.177 4.177 10 O -0.363 6.363 11 C -0.585 4.585 12 H 0.075 0.925 13 C -0.125 4.125 14 N -0.494 5.494 15 Si 0.712 3.288 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.209 1.209 19 H 0.085 0.915 20 H 0.076 0.924 21 H 0.120 0.880 22 H 0.185 0.815 23 H 0.030 0.970 24 H 0.062 0.938 25 H 0.107 0.893 26 H 0.189 0.811 27 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.339 6.891 1.227 7.380 hybrid contribution 0.266 -0.566 -1.420 1.552 sum 2.605 6.325 -0.193 6.843 Atomic orbital electron populations 1.20346 0.87202 1.03782 1.02261 1.22127 0.96860 0.90144 0.98409 1.77062 0.86957 1.23137 1.27348 1.45997 1.06711 1.05416 1.62275 0.72963 1.22213 0.99755 0.84563 1.04849 1.21543 0.91189 0.99655 1.09574 1.17094 0.83220 0.77864 0.94394 1.21624 0.97536 1.04210 0.94331 1.86515 1.38824 1.64161 1.46834 1.21560 1.33279 0.96520 1.07130 0.92486 1.24997 0.95334 0.96191 0.95992 1.70014 1.42871 1.02086 1.34417 0.86680 0.80232 0.78303 0.83596 1.19747 1.21059 1.20903 0.91477 0.92427 0.87996 0.81470 0.96978 0.93790 0.89251 0.81088 0.93179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.44 8.82 36.00 0.32 -1.13 15 2 C 0.09 1.92 7.03 -82.41 -0.58 1.34 15 3 N -0.32 -6.41 12.70 33.67 0.43 -5.98 15 4 N -0.50 -8.45 7.36 30.45 0.22 -8.23 15 5 H 0.43 5.45 8.96 -182.61 -1.64 3.81 15 6 C 0.03 0.57 11.16 -17.22 -0.19 0.38 15 7 C -0.21 -4.57 4.71 -105.05 -0.49 -5.06 15 8 C 0.31 7.70 0.76 -92.93 -0.07 7.63 15 9 C -0.12 -2.92 8.48 37.16 0.32 -2.60 15 10 O -0.56 -13.91 11.82 -35.23 -0.42 -14.32 15 11 C -0.55 -14.32 6.57 -34.44 -0.23 -14.54 15 12 H 0.06 1.52 7.43 -52.49 -0.39 1.13 15 13 C 0.08 2.13 5.24 -17.82 -0.09 2.04 15 14 N -0.86 -23.87 10.87 55.43 0.60 -23.26 15 15 Si 0.88 20.56 29.54 -169.99 -5.02 15.54 15 16 H -0.27 -6.32 7.11 56.52 0.40 -5.92 15 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 19 H 0.07 1.14 7.92 -51.93 -0.41 0.73 15 20 H 0.06 0.95 8.14 -51.93 -0.42 0.53 15 21 H 0.10 2.06 5.96 -51.93 -0.31 1.76 15 22 H 0.17 2.63 7.70 -52.49 -0.40 2.22 15 23 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 15 24 H 0.04 0.99 6.16 -51.93 -0.32 0.67 15 25 H 0.09 2.40 6.07 -51.93 -0.32 2.08 15 26 H 0.35 7.57 8.62 45.56 0.39 7.97 15 27 H 0.26 6.87 8.31 -40.82 -0.34 6.53 15 LS Contribution 229.78 15.07 3.46 3.46 Total: -1.00 -30.64 229.78 -5.12 -35.76 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -3.37 Total: 8.98 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: -1.02 Total: -11.95 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: 1.25 Total: -37.47 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -0.42 Total: -14.32 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -30.64 -5.12 -35.76 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259554927.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.137 kcal (2) G-P(sol) polarization free energy of solvation -30.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds