Wall clock time and date at job start Mon Mar 30 2020 02:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30838 * 125.89929 * 2 1 4 4 N 1.40085 * 108.20757 * 179.97438 * 3 2 1 5 5 H 0.96995 * 126.03759 * 179.97438 * 4 3 2 6 6 C 1.34946 * 107.92553 * 359.76075 * 4 3 2 7 7 C 1.35321 * 107.74308 * 0.38326 * 6 4 3 8 8 C 1.50698 * 126.03870 * 179.87178 * 7 6 4 9 9 C 1.52999 * 109.47150 * 119.69383 * 8 7 6 10 10 O 1.42905 * 109.47321 * 359.69726 * 8 7 6 11 11 C 1.50697 * 109.47576 * 239.69481 * 8 7 6 12 12 H 1.08001 * 119.99890 * 0.02562 * 11 8 7 13 13 C 1.37876 * 120.00428 * 180.02562 * 11 8 7 14 14 N 1.31510 * 119.99600 * 0.02562 * 13 11 8 15 15 Si 1.86805 * 120.00227 * 180.02562 * 13 11 8 16 16 H 1.48499 * 109.46821 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46996 * 120.00312 * 15 13 11 18 18 H 1.48495 * 109.46665 * 239.99993 * 15 13 11 19 19 H 1.09001 * 109.47009 * 270.02366 * 1 2 3 20 20 H 1.09000 * 109.47208 * 30.02206 * 1 2 3 21 21 H 1.08998 * 109.47160 * 150.02632 * 1 2 3 22 22 H 1.07996 * 126.12885 * 180.24044 * 6 4 3 23 23 H 1.09001 * 109.47362 * 300.00765 * 9 8 7 24 24 H 1.09002 * 109.46716 * 60.00124 * 9 8 7 25 25 H 1.09000 * 109.47486 * 180.02562 * 9 8 7 26 26 H 0.96696 * 114.00036 * 299.99741 * 10 8 7 27 27 H 0.97006 * 120.00212 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2741 1.0598 0.0000 4 7 3.6087 0.6341 0.0006 5 1 4.3907 1.2080 0.0004 6 6 3.6142 -0.7153 0.0063 7 6 2.3271 -1.1330 0.0006 8 6 1.8599 -2.5657 0.0012 9 6 1.0161 -2.8264 1.2506 10 8 2.9931 -3.4363 0.0017 11 6 1.0288 -2.8237 -1.2291 12 1 0.8565 -2.0297 -1.9406 13 6 0.4883 -4.0733 -1.4465 14 7 0.6977 -5.0401 -0.5798 15 14 -0.5413 -4.3933 -2.9719 16 1 -0.6254 -3.1513 -3.7817 17 1 0.0902 -5.4680 -3.7789 18 1 -1.9066 -4.8149 -2.5680 19 1 -0.3633 0.0004 1.0277 20 1 -0.3633 0.8898 -0.5142 21 1 -0.3633 -0.8902 -0.5134 22 1 4.4891 -1.3485 0.0119 23 1 1.6171 -2.6398 2.1405 24 1 0.1517 -2.1624 1.2502 25 1 0.6785 -3.8628 1.2513 26 1 3.5741 -3.3261 -0.7633 27 1 0.3172 -5.9192 -0.7325 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259554927.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:57 Heat of formation + Delta-G solvation = -3.602086 kcal Electronic energy + Delta-G solvation = -12754.015605 eV Core-core repulsion = 10512.562484 eV Total energy + Delta-G solvation = -2241.453121 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.02260 -37.89169 -34.34295 -33.72653 -31.69755 -29.41504 -28.63618 -27.16396 -23.27219 -21.33834 -20.21008 -18.89670 -18.67119 -16.60729 -16.18309 -15.64734 -14.98070 -14.87622 -14.23793 -13.67478 -13.44958 -13.23934 -13.03301 -12.83579 -12.65453 -12.37570 -12.25297 -12.00557 -11.82865 -10.81259 -10.51702 -10.17136 -10.11228 -9.08087 -7.93520 -6.18201 1.09088 1.44440 1.48722 1.57990 2.01894 2.20702 2.50582 3.25176 3.96667 4.16106 4.32274 4.60648 4.80854 4.89789 5.05295 5.08471 5.14494 5.34101 5.39380 5.67548 5.85776 5.90925 6.14871 6.37517 6.64496 6.85686 6.94174 7.48192 7.72232 9.04104 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.042857 B = 0.013673 C = 0.012355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.178581 B = 2047.408280 C = 2265.762605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.076 3.924 3 N -0.332 5.332 4 N -0.474 5.474 5 H 0.449 0.551 6 C 0.052 3.948 7 C -0.250 4.250 8 C 0.313 3.687 9 C -0.114 4.114 10 O -0.575 6.575 11 C -0.548 4.548 12 H 0.047 0.953 13 C 0.037 3.963 14 N -0.887 5.887 15 Si 0.943 3.057 16 H -0.271 1.271 17 H -0.285 1.285 18 H -0.280 1.280 19 H 0.080 0.920 20 H 0.075 0.925 21 H 0.081 0.919 22 H 0.198 0.802 23 H 0.015 0.985 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.356 0.644 27 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.220 7.063 0.185 7.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.090 4.090 3 N -0.158 5.158 4 N -0.185 5.185 5 H 0.296 0.704 6 C -0.095 4.095 7 C -0.261 4.261 8 C 0.273 3.727 9 C -0.172 4.172 10 O -0.379 6.379 11 C -0.586 4.586 12 H 0.066 0.934 13 C -0.166 4.166 14 N -0.525 5.525 15 Si 0.769 3.231 16 H -0.196 1.196 17 H -0.211 1.211 18 H -0.206 1.206 19 H 0.098 0.902 20 H 0.094 0.906 21 H 0.100 0.900 22 H 0.214 0.786 23 H 0.034 0.966 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.201 0.799 27 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.940 7.939 0.800 8.504 hybrid contribution 0.171 -0.826 -1.270 1.524 sum 3.111 7.113 -0.469 7.778 Atomic orbital electron populations 1.20321 0.86396 1.03589 1.03068 1.22387 0.97812 0.90094 0.98704 1.77017 0.87974 1.22977 1.27866 1.46009 1.06764 1.05352 1.60371 0.70444 1.22554 0.99628 0.85238 1.02034 1.21369 0.92957 0.98532 1.13244 1.16967 0.82945 0.79461 0.93336 1.21549 0.98119 1.02585 0.94948 1.86470 1.39100 1.64778 1.47517 1.21736 1.33208 0.96111 1.07535 0.93427 1.25628 0.96417 0.96161 0.98346 1.70138 1.44091 1.02339 1.35915 0.85770 0.78856 0.77910 0.80567 1.19554 1.21095 1.20590 0.90180 0.90634 0.90036 0.78552 0.96618 0.92822 0.92019 0.79931 0.93337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.73 8.82 71.23 0.63 -2.10 15 2 C 0.08 3.07 7.03 43.10 0.30 3.37 15 3 N -0.33 -12.54 12.70 -47.39 -0.60 -13.14 15 4 N -0.47 -14.71 7.36 -57.59 -0.42 -15.13 15 5 H 0.45 9.80 8.96 -213.34 -1.91 7.88 15 6 C 0.05 1.79 11.16 83.54 0.93 2.72 15 7 C -0.25 -10.57 4.71 -20.14 -0.09 -10.66 15 8 C 0.31 15.16 0.76 -12.29 -0.01 15.15 15 9 C -0.11 -5.59 8.48 71.98 0.61 -4.98 15 10 O -0.57 -28.11 11.82 -148.98 -1.76 -29.87 15 11 C -0.55 -28.55 6.57 25.60 0.17 -28.38 15 12 H 0.05 2.53 7.43 -2.91 -0.02 2.50 15 13 C 0.04 1.95 5.24 84.66 0.44 2.39 15 14 N -0.89 -49.70 10.87 21.45 0.23 -49.47 15 15 Si 0.94 42.22 29.54 68.60 2.03 44.25 15 16 H -0.27 -11.93 7.11 99.48 0.71 -11.23 15 17 H -0.28 -12.69 7.11 99.48 0.71 -11.99 15 18 H -0.28 -12.32 7.11 99.48 0.71 -11.61 15 19 H 0.08 2.63 7.92 -2.39 -0.02 2.61 15 20 H 0.07 2.40 8.14 -2.39 -0.02 2.38 15 21 H 0.08 3.28 5.96 -2.39 -0.01 3.27 15 22 H 0.20 5.48 7.70 -2.91 -0.02 5.45 15 23 H 0.01 0.70 8.14 -2.39 -0.02 0.68 15 24 H 0.05 2.43 6.16 -2.39 -0.01 2.41 15 25 H 0.06 3.35 6.07 -2.39 -0.01 3.33 15 26 H 0.36 15.22 8.62 -74.06 -0.64 14.59 15 27 H 0.26 13.80 8.31 -92.70 -0.77 13.03 15 Total: -1.00 -63.66 229.78 1.11 -62.55 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: -1.35 Total: 23.31 kcal Atomic # 6 Polarization: -25.47 SS G_CDS: 2.98 Total: -22.49 kcal Atomic # 7 Polarization: -76.95 SS G_CDS: -0.79 Total: -77.74 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -1.76 Total: -29.87 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -63.66 1.11 -62.55 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259554927.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.944 kcal (2) G-P(sol) polarization free energy of solvation -63.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds