Wall clock time and date at job start Mon Mar 30 2020 02:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30833 * 125.90276 * 2 1 4 4 N 1.40085 * 108.20858 * 180.02562 * 3 2 1 5 5 H 0.97001 * 126.03109 * 180.02562 * 4 3 2 6 6 C 1.34945 * 107.92516 * 0.02562 * 4 3 2 7 7 C 1.35319 * 107.74770 * 359.97438 * 6 4 3 8 8 C 1.50697 * 126.04107 * 179.97438 * 7 6 4 9 9 C 1.53003 * 109.47271 * 239.98193 * 8 7 6 10 10 O 1.42894 * 109.46985 * 359.97438 * 8 7 6 11 11 C 1.50702 * 109.47140 * 119.97915 * 8 7 6 12 12 H 1.08002 * 119.99514 * 0.02562 * 11 8 7 13 13 C 1.37874 * 120.00057 * 179.97438 * 11 8 7 14 14 N 1.31518 * 120.00119 * 0.02562 * 13 11 8 15 15 Si 1.86802 * 120.00073 * 179.97438 * 13 11 8 16 16 H 1.48501 * 109.47047 * 89.99775 * 15 13 11 17 17 H 1.48494 * 109.46999 * 210.00320 * 15 13 11 18 18 H 1.48506 * 109.47009 * 330.00390 * 15 13 11 19 19 H 1.08994 * 109.47140 * 90.02832 * 1 2 3 20 20 H 1.09000 * 109.46925 * 210.02877 * 1 2 3 21 21 H 1.08998 * 109.46805 * 330.02021 * 1 2 3 22 22 H 1.07994 * 126.12681 * 180.02562 * 6 4 3 23 23 H 1.08999 * 109.47170 * 59.99821 * 9 8 7 24 24 H 1.08997 * 109.47285 * 180.02562 * 9 8 7 25 25 H 1.09004 * 109.46888 * 299.99923 * 9 8 7 26 26 H 0.96704 * 114.00072 * 60.00070 * 10 8 7 27 27 H 0.96990 * 120.00085 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 -0.0006 5 1 4.3908 1.2079 -0.0004 6 6 3.6142 -0.7154 -0.0015 7 6 2.3271 -1.1331 -0.0009 8 6 1.8599 -2.5658 -0.0022 9 6 1.0147 -2.8256 -1.2508 10 8 2.9931 -3.4363 -0.0046 11 6 1.0302 -2.8247 1.2290 12 1 0.8581 -2.0309 1.9408 13 6 0.4899 -4.0744 1.4460 14 7 0.6991 -5.0409 0.5789 15 14 -0.5380 -4.3955 2.9724 16 1 -1.9641 -4.1029 2.6793 17 1 -0.3968 -5.8181 3.3740 18 1 -0.0701 -3.5204 4.0773 19 1 -0.3633 -0.0005 -1.0276 20 1 -0.3633 -0.8897 0.5143 21 1 -0.3633 0.8902 0.5135 22 1 4.4891 -1.3486 -0.0018 23 1 1.6148 -2.6384 -2.1412 24 1 0.6763 -3.8617 -1.2514 25 1 0.1503 -2.1615 -1.2490 26 1 3.5750 -3.3267 0.7598 27 1 0.3188 -5.9200 0.7313 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259554928.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:00 Heat of formation + Delta-G solvation = 19.400635 kcal Electronic energy + Delta-G solvation = -12752.753985 eV Core-core repulsion = 10512.298337 eV Total energy + Delta-G solvation = -2240.455648 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.49855 -36.03097 -32.53014 -31.98842 -29.95917 -27.70013 -27.15560 -25.14030 -21.52950 -19.73630 -18.62813 -17.18151 -16.86305 -14.63422 -14.37389 -14.09913 -13.46960 -13.04827 -12.49595 -12.19358 -11.80066 -11.48646 -11.23925 -10.97232 -10.82366 -10.58387 -10.33047 -10.24977 -10.05049 -8.98012 -8.63660 -8.48476 -8.30518 -7.45198 -5.92812 -4.12019 2.58552 3.29812 3.37617 3.40157 3.54603 3.62750 4.43344 5.26644 5.48039 5.60885 6.01440 6.10606 6.32349 6.38877 6.67724 6.74226 6.86226 7.03130 7.21282 7.46509 7.66529 7.83492 7.96429 8.09826 8.33690 8.41882 8.89313 9.40631 9.64467 11.06202 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.042851 B = 0.013671 C = 0.012357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.271193 B = 2047.680857 C = 2265.379240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.091 3.909 3 N -0.320 5.320 4 N -0.495 5.495 5 H 0.428 0.572 6 C 0.031 3.969 7 C -0.208 4.208 8 C 0.315 3.685 9 C -0.119 4.119 10 O -0.561 6.561 11 C -0.548 4.548 12 H 0.056 0.944 13 C 0.080 3.920 14 N -0.858 5.858 15 Si 0.885 3.115 16 H -0.279 1.279 17 H -0.287 1.287 18 H -0.275 1.275 19 H 0.067 0.933 20 H 0.101 0.899 21 H 0.057 0.943 22 H 0.168 0.832 23 H 0.011 0.989 24 H 0.089 0.911 25 H 0.043 0.957 26 H 0.346 0.654 27 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.629 6.040 -0.599 6.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.076 4.076 3 N -0.145 5.145 4 N -0.204 5.204 5 H 0.270 0.730 6 C -0.114 4.114 7 C -0.220 4.220 8 C 0.275 3.725 9 C -0.177 4.177 10 O -0.363 6.363 11 C -0.586 4.586 12 H 0.075 0.925 13 C -0.125 4.125 14 N -0.494 5.494 15 Si 0.712 3.288 16 H -0.205 1.205 17 H -0.213 1.213 18 H -0.200 1.200 19 H 0.085 0.915 20 H 0.120 0.880 21 H 0.076 0.924 22 H 0.185 0.815 23 H 0.030 0.970 24 H 0.107 0.893 25 H 0.062 0.938 26 H 0.189 0.811 27 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.338 6.871 -1.223 7.360 hybrid contribution 0.257 -0.551 1.426 1.550 sum 2.595 6.321 0.203 6.836 Atomic orbital electron populations 1.20346 0.87199 1.03766 1.02274 1.22130 0.96857 0.90146 0.98420 1.77059 0.86961 1.23139 1.27344 1.45997 1.06710 1.05414 1.62281 0.72960 1.22210 0.99753 0.84562 1.04847 1.21546 0.91188 0.99655 1.09569 1.17085 0.83219 0.77862 0.94373 1.21624 0.97531 1.04210 0.94340 1.86514 1.38758 1.64191 1.46861 1.21523 1.33412 0.96516 1.07112 0.92546 1.24994 0.95323 0.96178 0.95996 1.70002 1.42765 1.02128 1.34497 0.86733 0.80815 0.77431 0.83778 1.20515 1.21256 1.19969 0.91472 0.88011 0.92423 0.81474 0.96970 0.89254 0.93797 0.81088 0.93119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.44 8.81 36.01 0.32 -1.12 15 2 C 0.09 1.91 7.03 -82.40 -0.58 1.34 15 3 N -0.32 -6.40 12.70 33.67 0.43 -5.98 15 4 N -0.50 -8.45 7.36 30.44 0.22 -8.23 15 5 H 0.43 5.45 8.96 -182.61 -1.64 3.82 15 6 C 0.03 0.57 11.16 -17.22 -0.19 0.38 15 7 C -0.21 -4.57 4.71 -105.05 -0.49 -5.06 15 8 C 0.32 7.71 0.76 -92.92 -0.07 7.64 15 9 C -0.12 -2.92 8.48 37.16 0.32 -2.60 15 10 O -0.56 -13.91 11.82 -35.23 -0.42 -14.32 15 11 C -0.55 -14.34 6.58 -34.44 -0.23 -14.57 15 12 H 0.06 1.50 7.43 -52.49 -0.39 1.11 15 13 C 0.08 2.14 5.24 -17.82 -0.09 2.05 15 14 N -0.86 -23.87 10.87 55.43 0.60 -23.27 15 15 Si 0.88 20.58 29.54 -169.99 -5.02 15.56 15 16 H -0.28 -6.41 7.11 56.52 0.40 -6.00 15 17 H -0.29 -6.69 7.11 56.52 0.40 -6.29 15 18 H -0.27 -6.40 7.11 56.52 0.40 -5.99 15 19 H 0.07 1.14 7.91 -51.93 -0.41 0.73 15 20 H 0.10 2.06 5.97 -51.93 -0.31 1.75 15 21 H 0.06 0.95 8.14 -51.93 -0.42 0.53 15 22 H 0.17 2.63 7.70 -52.49 -0.40 2.23 15 23 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 15 24 H 0.09 2.40 6.07 -51.93 -0.32 2.08 15 25 H 0.04 0.99 6.15 -51.93 -0.32 0.67 15 26 H 0.35 7.57 8.61 45.56 0.39 7.97 15 27 H 0.26 6.90 8.31 -40.82 -0.34 6.56 15 LS Contribution 229.76 15.07 3.46 3.46 Total: -1.00 -30.62 229.76 -5.12 -35.74 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -3.37 Total: 9.00 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: -1.02 Total: -11.96 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 1.25 Total: -37.48 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -0.42 Total: -14.32 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -30.62 -5.12 -35.74 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259554928.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.140 kcal (2) G-P(sol) polarization free energy of solvation -30.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds