Wall clock time and date at job start Mon Mar 30 2020 02:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.34428 * 125.86457 * 2 1 4 4 N 1.37515 * 106.91683 * 180.02562 * 3 2 1 5 5 C 1.46496 * 126.47614 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47238 * 99.99691 * 5 4 3 7 7 C 1.50706 * 109.47348 * 179.97438 * 6 5 4 8 8 H 1.08000 * 119.99302 * 359.97438 * 7 6 5 9 9 C 1.37871 * 120.00436 * 179.72505 * 7 6 5 10 10 N 1.31514 * 120.00481 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 119.99745 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.47209 * 90.00365 * 11 9 7 13 13 H 1.48506 * 109.47294 * 210.00213 * 11 9 7 14 14 H 1.48501 * 109.47275 * 330.00116 * 11 9 7 15 15 C 1.35876 * 107.04358 * 0.25431 * 4 3 2 16 16 O 1.35502 * 125.76647 * 179.71298 * 15 4 3 17 17 N 1.31024 * 108.47159 * 359.57391 * 15 4 3 18 18 H 1.09001 * 109.47582 * 90.00199 * 1 2 3 19 19 H 1.09005 * 109.47151 * 210.00232 * 1 2 3 20 20 H 1.09006 * 109.47454 * 330.00524 * 1 2 3 21 21 H 1.07997 * 126.54296 * 359.97438 * 3 2 1 22 22 H 1.09000 * 109.47435 * 339.99595 * 5 4 3 23 23 H 1.09002 * 109.46784 * 219.99230 * 5 4 3 24 24 H 1.09001 * 109.47671 * 59.99927 * 6 5 4 25 25 H 1.08998 * 109.47454 * 299.99925 * 6 5 4 26 26 H 0.96995 * 120.00207 * 179.97438 * 10 9 7 27 27 H 0.96697 * 113.99947 * 90.00219 * 16 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2945 1.0894 0.0000 4 7 3.5951 0.6429 -0.0006 5 6 4.8013 1.4743 -0.0003 6 6 5.3637 1.5565 1.4202 7 6 6.6049 2.4113 1.4205 8 1 6.9576 2.8514 0.4994 9 6 7.2873 2.6356 2.5973 10 7 8.3702 3.3819 2.5976 11 14 6.6729 1.8807 4.1916 12 1 7.2924 0.5438 4.3773 13 1 7.0421 2.7597 5.3302 14 1 5.1958 1.7383 4.1350 15 6 3.5500 -0.7151 -0.0067 16 8 4.6225 -1.5432 -0.0147 17 7 2.2942 -1.0887 -0.0005 18 1 -0.3634 0.0000 -1.0276 19 1 -0.3634 -0.8900 0.5139 20 1 -0.3634 0.8901 0.5138 21 1 1.9681 2.1189 -0.0004 22 1 4.5525 2.4758 -0.3511 23 1 5.5471 1.0326 -0.6612 24 1 5.6127 0.5550 1.7711 25 1 4.6180 1.9981 2.0813 26 1 8.8500 3.5400 3.4255 27 1 4.9373 -1.7876 0.8663 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259558374.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:56 Heat of formation + Delta-G solvation = 10.084811 kcal Electronic energy + Delta-G solvation = -12091.241025 eV Core-core repulsion = 9850.381412 eV Total energy + Delta-G solvation = -2240.859612 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.68710 -36.95235 -34.98152 -32.79831 -30.79248 -29.91636 -26.50041 -24.79120 -21.62513 -20.72569 -20.06745 -17.85463 -17.14228 -15.98669 -15.10029 -14.46563 -14.28842 -13.83618 -13.46234 -13.00946 -12.81671 -12.47609 -12.22163 -11.71275 -11.41172 -11.23345 -10.65975 -10.45266 -10.04123 -9.65237 -9.49090 -9.08381 -8.75260 -7.91216 -6.25188 -4.27405 2.21728 2.95651 3.16402 3.23329 3.25519 3.27596 4.20490 4.26421 5.06798 5.09695 5.25113 5.50060 5.58756 5.81595 5.87785 5.98285 6.14030 6.16161 6.51488 6.77384 6.81819 7.05523 7.09762 7.48806 7.98914 8.25569 8.29595 8.75515 9.34578 10.87285 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.049111 B = 0.009061 C = 0.008930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.996765 B = 3089.502773 C = 3134.637277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.006 4.006 3 C -0.041 4.041 4 N -0.450 5.450 5 C 0.110 3.890 6 C -0.019 4.019 7 C -0.530 4.530 8 H 0.077 0.923 9 C 0.075 3.925 10 N -0.894 5.894 11 Si 0.879 3.121 12 H -0.275 1.275 13 H -0.284 1.284 14 H -0.267 1.267 15 C 0.372 3.628 16 O -0.444 6.444 17 N -0.495 5.495 18 H 0.064 0.936 19 H 0.066 0.934 20 H 0.067 0.933 21 H 0.175 0.825 22 H 0.089 0.911 23 H 0.088 0.912 24 H 0.014 0.986 25 H 0.024 0.976 26 H 0.267 0.733 27 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.119 -4.521 -2.530 12.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.136 4.136 3 C -0.175 4.175 4 N -0.143 5.143 5 C -0.011 4.011 6 C -0.057 4.057 7 C -0.568 4.568 8 H 0.095 0.905 9 C -0.128 4.128 10 N -0.531 5.531 11 Si 0.706 3.294 12 H -0.200 1.200 13 H -0.210 1.210 14 H -0.192 1.192 15 C 0.072 3.928 16 O -0.245 6.245 17 N -0.225 5.225 18 H 0.082 0.918 19 H 0.085 0.915 20 H 0.086 0.914 21 H 0.192 0.808 22 H 0.108 0.892 23 H 0.107 0.893 24 H 0.032 0.968 25 H 0.042 0.958 26 H 0.077 0.923 27 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -11.027 -5.194 -3.024 12.558 hybrid contribution 0.468 0.487 1.439 1.590 sum -10.559 -4.706 -1.585 11.668 Atomic orbital electron populations 1.19966 0.87742 1.02362 1.01835 1.20444 0.96208 0.88141 1.08791 1.22406 0.82444 1.00337 1.12357 1.46499 1.08116 1.07077 1.52571 1.22190 0.82942 0.94087 1.01860 1.19869 0.97333 0.97551 0.90964 1.20837 1.08128 1.31151 0.96680 0.90525 1.24950 0.94452 0.94459 0.98988 1.69884 1.17448 1.37846 1.27963 0.86793 0.79773 0.79530 0.83302 1.20030 1.20968 1.19154 1.20260 0.86817 0.79137 1.06546 1.84822 1.42946 1.62589 1.34105 1.70297 0.98921 1.30505 1.22798 0.91753 0.91494 0.91407 0.80752 0.89228 0.89344 0.96753 0.95798 0.92321 0.74454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.72 10.42 36.00 0.38 -0.34 15 2 C -0.01 -0.10 7.08 -82.84 -0.59 -0.69 15 3 C -0.04 -0.66 11.48 -16.35 -0.19 -0.85 15 4 N -0.45 -8.17 2.79 -118.52 -0.33 -8.50 15 5 C 0.11 2.08 6.07 -4.04 -0.02 2.05 15 6 C -0.02 -0.43 4.36 -27.88 -0.12 -0.55 15 7 C -0.53 -14.17 9.66 -34.44 -0.33 -14.50 15 8 H 0.08 2.18 7.99 -52.49 -0.42 1.76 15 9 C 0.07 2.07 5.47 -17.82 -0.10 1.97 15 10 N -0.89 -26.37 13.96 55.43 0.77 -25.60 15 11 Si 0.88 20.81 27.47 -169.99 -4.67 16.14 15 12 H -0.27 -6.37 7.11 56.52 0.40 -5.97 15 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 14 H -0.27 -6.17 6.53 56.52 0.37 -5.80 15 15 C 0.37 6.97 9.06 -89.17 -0.81 6.16 15 16 O -0.44 -7.53 13.57 -18.20 -0.25 -7.78 15 17 N -0.49 -9.30 11.28 -10.94 -0.12 -9.42 15 18 H 0.06 0.67 8.14 -51.93 -0.42 0.25 15 19 H 0.07 0.77 8.14 -51.93 -0.42 0.35 15 20 H 0.07 0.65 8.14 -51.93 -0.42 0.23 15 21 H 0.18 2.23 8.06 -52.49 -0.42 1.81 15 22 H 0.09 1.58 8.12 -51.93 -0.42 1.15 15 23 H 0.09 1.67 8.14 -51.93 -0.42 1.25 15 24 H 0.01 0.32 7.58 -51.93 -0.39 -0.08 15 25 H 0.02 0.55 7.18 -51.93 -0.37 0.18 15 26 H 0.27 7.36 8.31 -40.82 -0.34 7.02 15 27 H 0.40 5.10 9.06 45.56 0.41 5.51 15 LS Contribution 242.30 15.07 3.65 3.65 Total: -1.00 -31.66 242.30 -5.21 -36.87 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -2.48 Total: 1.38 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -1.78 Total: -6.75 kcal Atomic # 7 Polarization: -43.84 SS G_CDS: 0.32 Total: -43.52 kcal Atomic # 8 Polarization: -7.53 SS G_CDS: -0.25 Total: -7.78 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.67 Total: 16.14 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -31.66 -5.21 -36.87 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259558374.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.954 kcal (2) G-P(sol) polarization free energy of solvation -31.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds