Wall clock time and date at job start Mon Mar 30 2020 02:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.34428 * 125.86457 * 2 1 4 4 N 1.37515 * 106.91683 * 180.02562 * 3 2 1 5 5 C 1.46496 * 126.47614 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47238 * 99.99691 * 5 4 3 7 7 C 1.50706 * 109.47348 * 179.97438 * 6 5 4 8 8 H 1.08000 * 119.99302 * 359.97438 * 7 6 5 9 9 C 1.37871 * 120.00436 * 179.72505 * 7 6 5 10 10 N 1.31514 * 120.00481 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 119.99745 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.47209 * 90.00365 * 11 9 7 13 13 H 1.48506 * 109.47294 * 210.00213 * 11 9 7 14 14 H 1.48501 * 109.47275 * 330.00116 * 11 9 7 15 15 C 1.35876 * 107.04358 * 0.25431 * 4 3 2 16 16 O 1.35502 * 125.76647 * 179.71298 * 15 4 3 17 17 N 1.31024 * 108.47159 * 359.57391 * 15 4 3 18 18 H 1.09001 * 109.47582 * 90.00199 * 1 2 3 19 19 H 1.09005 * 109.47151 * 210.00232 * 1 2 3 20 20 H 1.09006 * 109.47454 * 330.00524 * 1 2 3 21 21 H 1.07997 * 126.54296 * 359.97438 * 3 2 1 22 22 H 1.09000 * 109.47435 * 339.99595 * 5 4 3 23 23 H 1.09002 * 109.46784 * 219.99230 * 5 4 3 24 24 H 1.09001 * 109.47671 * 59.99927 * 6 5 4 25 25 H 1.08998 * 109.47454 * 299.99925 * 6 5 4 26 26 H 0.96995 * 120.00207 * 179.97438 * 10 9 7 27 27 H 0.96697 * 113.99947 * 90.00219 * 16 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2945 1.0894 0.0000 4 7 3.5951 0.6429 -0.0006 5 6 4.8013 1.4743 -0.0003 6 6 5.3637 1.5565 1.4202 7 6 6.6049 2.4113 1.4205 8 1 6.9576 2.8514 0.4994 9 6 7.2873 2.6356 2.5973 10 7 8.3702 3.3819 2.5976 11 14 6.6729 1.8807 4.1916 12 1 7.2924 0.5438 4.3773 13 1 7.0421 2.7597 5.3302 14 1 5.1958 1.7383 4.1350 15 6 3.5500 -0.7151 -0.0067 16 8 4.6225 -1.5432 -0.0147 17 7 2.2942 -1.0887 -0.0005 18 1 -0.3634 0.0000 -1.0276 19 1 -0.3634 -0.8900 0.5139 20 1 -0.3634 0.8901 0.5138 21 1 1.9681 2.1189 -0.0004 22 1 4.5525 2.4758 -0.3511 23 1 5.5471 1.0326 -0.6612 24 1 5.6127 0.5550 1.7711 25 1 4.6180 1.9981 2.0813 26 1 8.8500 3.5400 3.4255 27 1 4.9373 -1.7876 0.8663 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259558374.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:56 Heat of formation + Delta-G solvation = -13.939886 kcal Electronic energy + Delta-G solvation = -12092.282814 eV Core-core repulsion = 9850.381412 eV Total energy + Delta-G solvation = -2241.901401 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.99590 -38.23946 -36.58232 -34.68355 -32.18931 -31.39130 -27.91055 -26.32214 -23.33290 -22.14152 -21.34274 -19.42115 -18.87409 -17.46403 -16.54659 -16.32397 -15.58456 -15.15636 -15.02734 -14.76961 -13.97567 -13.92774 -13.28079 -13.23079 -13.01080 -12.62054 -12.32575 -12.15877 -11.87454 -11.59629 -10.96173 -10.84851 -10.51659 -9.15603 -8.37115 -6.43929 0.91429 1.31346 1.34211 1.43761 1.64178 1.95291 2.28435 2.94144 2.98406 3.85778 3.90685 4.26927 4.36417 4.48175 4.54762 4.95256 4.98511 5.04680 5.08368 5.15527 5.40650 5.44423 5.69846 5.90634 6.13271 6.63148 6.72301 7.00070 7.21715 8.78691 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.049111 B = 0.009061 C = 0.008930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.996765 B = 3089.502773 C = 3134.637277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C -0.016 4.016 3 C -0.045 4.045 4 N -0.457 5.457 5 C 0.123 3.877 6 C -0.012 4.012 7 C -0.534 4.534 8 H 0.045 0.955 9 C 0.016 3.984 10 N -0.942 5.942 11 Si 0.946 3.054 12 H -0.265 1.265 13 H -0.282 1.282 14 H -0.254 1.254 15 C 0.353 3.647 16 O -0.453 6.453 17 N -0.518 5.518 18 H 0.078 0.922 19 H 0.065 0.935 20 H 0.093 0.907 21 H 0.207 0.793 22 H 0.102 0.898 23 H 0.084 0.916 24 H 0.019 0.981 25 H 0.024 0.976 26 H 0.269 0.731 27 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.989 -4.908 -1.949 14.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.145 4.145 3 C -0.178 4.178 4 N -0.151 5.151 5 C 0.002 3.998 6 C -0.050 4.050 7 C -0.573 4.573 8 H 0.063 0.937 9 C -0.182 4.182 10 N -0.581 5.581 11 Si 0.769 3.231 12 H -0.190 1.190 13 H -0.208 1.208 14 H -0.178 1.178 15 C 0.053 3.947 16 O -0.256 6.256 17 N -0.249 5.249 18 H 0.096 0.904 19 H 0.084 0.916 20 H 0.111 0.889 21 H 0.224 0.776 22 H 0.121 0.879 23 H 0.102 0.898 24 H 0.037 0.963 25 H 0.042 0.958 26 H 0.078 0.922 27 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -12.921 -5.598 -2.448 14.292 hybrid contribution 1.038 0.613 1.179 1.686 sum -11.882 -4.985 -1.269 12.948 Atomic orbital electron populations 1.20105 0.84795 1.03605 1.03124 1.21190 0.98068 0.87458 1.07766 1.23037 0.81421 1.01907 1.11398 1.46461 1.08468 1.06836 1.53296 1.21874 0.83462 0.94985 0.99493 1.19712 0.95376 0.96579 0.93299 1.21138 1.09549 1.31071 0.95494 0.93658 1.25846 0.94566 0.94997 1.02823 1.70023 1.19156 1.39864 1.29089 0.85733 0.79814 0.78839 0.78679 1.19043 1.20770 1.17806 1.20518 0.87229 0.79572 1.07369 1.84777 1.42701 1.62450 1.35624 1.70322 0.99324 1.31877 1.23423 0.90367 0.91554 0.88873 0.77633 0.87928 0.89809 0.96311 0.95789 0.92164 0.72713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.19 10.42 71.23 0.74 -0.45 15 2 C -0.02 -0.48 7.08 41.30 0.29 -0.19 15 3 C -0.05 -1.32 11.48 82.93 0.95 -0.37 15 4 N -0.46 -15.71 2.79 -639.94 -1.79 -17.50 15 5 C 0.12 4.49 6.07 86.38 0.52 5.01 15 6 C -0.01 -0.50 4.36 29.85 0.13 -0.37 15 7 C -0.53 -28.61 9.66 25.60 0.25 -28.36 15 8 H 0.05 2.64 7.99 -2.91 -0.02 2.62 15 9 C 0.02 0.90 5.47 84.65 0.46 1.36 15 10 N -0.94 -56.33 13.96 21.45 0.30 -56.03 15 11 Si 0.95 42.20 27.47 68.60 1.88 44.09 15 12 H -0.27 -11.39 7.11 99.48 0.71 -10.68 15 13 H -0.28 -12.42 7.11 99.48 0.71 -11.72 15 14 H -0.25 -10.73 6.53 99.48 0.65 -10.08 15 15 C 0.35 12.72 9.06 179.84 1.63 14.35 15 16 O -0.45 -14.93 13.57 -88.03 -1.19 -16.12 15 17 N -0.52 -18.66 11.28 -302.09 -3.41 -22.07 15 18 H 0.08 1.38 8.14 -2.39 -0.02 1.36 15 19 H 0.07 1.36 8.14 -2.38 -0.02 1.34 15 20 H 0.09 1.41 8.14 -2.38 -0.02 1.39 15 21 H 0.21 4.47 8.06 -2.91 -0.02 4.44 15 22 H 0.10 3.44 8.12 -2.39 -0.02 3.42 15 23 H 0.08 3.11 8.14 -2.39 -0.02 3.09 15 24 H 0.02 0.79 7.58 -2.39 -0.02 0.78 15 25 H 0.02 1.04 7.18 -2.39 -0.02 1.03 15 26 H 0.27 15.04 8.31 -92.71 -0.77 14.27 15 27 H 0.41 10.15 9.06 -74.06 -0.67 9.48 15 Total: -1.00 -67.13 242.30 1.22 -65.91 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: 0.44 Total: 10.74 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: 4.98 Total: -9.02 kcal Atomic # 7 Polarization: -90.71 SS G_CDS: -4.90 Total: -95.60 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -1.19 Total: -16.12 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 1.88 Total: 44.09 kcal Total: -67.13 1.22 -65.91 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259558374.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.969 kcal (2) G-P(sol) polarization free energy of solvation -67.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds