Wall clock time and date at job start Mon Mar 30 2020 02:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46973 * 2 1 4 4 C 1.53004 * 109.46939 * 119.99833 * 2 1 3 5 5 C 1.50698 * 109.46869 * 65.00371 * 4 2 1 6 6 N 1.30411 * 128.66028 * 270.02118 * 5 4 2 7 7 O 1.20769 * 109.95620 * 179.97438 * 6 5 4 8 8 N 1.20929 * 116.14796 * 359.68856 * 7 6 5 9 9 C 1.32750 * 108.87918 * 0.50134 * 8 7 6 10 10 C 1.41596 * 128.83595 * 179.82117 * 9 8 7 11 11 H 1.08002 * 120.00550 * 179.68023 * 10 9 8 12 12 C 1.40073 * 119.99685 * 359.39755 * 10 9 8 13 13 N 1.30704 * 120.00102 * 0.27960 * 12 10 9 14 14 Si 1.86803 * 119.99980 * 180.27395 * 12 10 9 15 15 H 1.48499 * 109.46996 * 60.00815 * 14 12 10 16 16 H 1.48504 * 109.47036 * 180.02562 * 14 12 10 17 17 H 1.48493 * 109.47374 * 300.00611 * 14 12 10 18 18 H 1.08997 * 109.47538 * 299.99852 * 1 2 3 19 19 H 1.09004 * 109.46858 * 60.00405 * 1 2 3 20 20 H 1.09002 * 109.47152 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47538 * 240.00148 * 2 1 3 22 22 H 1.08999 * 109.47045 * 179.97438 * 3 2 1 23 23 H 1.08996 * 109.47273 * 300.00068 * 3 2 1 24 24 H 1.09011 * 109.46734 * 59.99929 * 3 2 1 25 25 H 1.08999 * 109.47272 * 304.99902 * 4 2 1 26 26 H 1.08997 * 109.46899 * 185.00280 * 4 2 1 27 27 H 0.96996 * 120.00349 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 -2.1733 1.1889 6 7 0.5555 -2.7393 1.6374 7 8 0.5837 -3.9247 1.4081 8 7 1.5642 -4.3325 0.8297 9 6 2.3849 -3.3136 0.6046 10 6 3.6473 -3.3151 -0.0366 11 1 4.1975 -2.3925 -0.1484 12 6 4.1854 -4.5144 -0.5206 13 7 3.5198 -5.6310 -0.3853 14 14 5.8544 -4.5177 -1.3597 15 1 6.8848 -4.0182 -0.4142 16 1 6.1953 -5.9012 -1.7782 17 1 5.8098 -3.6366 -2.5541 18 1 -0.3634 0.5138 0.8899 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3633 -1.0277 -0.0005 21 1 1.8934 -0.5138 -0.8899 22 1 3.1300 1.4426 0.0005 23 1 1.6767 1.9564 -0.8899 24 1 1.6766 1.9564 0.8901 25 1 1.6054 -0.2617 2.1370 26 1 3.1263 -0.6443 1.2952 27 1 3.8922 -6.4614 -0.7208 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259583055.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:14 Heat of formation + Delta-G solvation = 52.286638 kcal Electronic energy + Delta-G solvation = -12410.311797 eV Core-core repulsion = 10171.282193 eV Total energy + Delta-G solvation = -2239.029604 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -46.28479 -37.73643 -36.05123 -34.17714 -33.57048 -29.07507 -28.39696 -27.90439 -23.79829 -22.45926 -20.87450 -19.22747 -18.70867 -17.85166 -16.69108 -16.04614 -15.26905 -14.95394 -14.54786 -13.98231 -13.60402 -13.07322 -13.04693 -12.82796 -12.68013 -12.25292 -12.13137 -11.81286 -11.75652 -11.67847 -11.46878 -11.26632 -10.83059 -10.32555 -8.64682 -6.74456 1.13638 1.31558 1.40876 1.55860 1.88626 2.20302 3.17470 3.41788 3.74000 4.04878 4.13834 4.18385 4.27558 4.70979 4.79369 4.80753 4.88524 5.04858 5.07221 5.12590 5.22489 5.32298 5.41585 5.51124 5.55986 6.16212 6.43948 6.72652 8.35633 8.89848 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.034384 B = 0.012885 C = 0.009917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.131676 B = 2172.486792 C = 2822.765237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 C -0.134 4.134 4 C -0.010 4.010 5 C -0.058 4.058 6 N -0.398 5.398 7 O 0.220 5.780 8 N -0.466 5.466 9 C 0.121 3.879 10 C -0.452 4.452 11 H 0.111 0.889 12 C 0.019 3.981 13 N -0.807 5.807 14 Si 1.003 2.997 15 H -0.251 1.251 16 H -0.273 1.273 17 H -0.252 1.252 18 H 0.063 0.937 19 H 0.066 0.934 20 H 0.021 0.979 21 H 0.053 0.947 22 H 0.063 0.937 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.552 10.500 -1.559 10.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.109 4.109 3 C -0.191 4.191 4 C -0.049 4.049 5 C -0.225 4.225 6 N -0.128 5.128 7 O 0.031 5.969 8 N -0.220 5.220 9 C -0.028 4.028 10 C -0.491 4.491 11 H 0.129 0.871 12 C -0.199 4.199 13 N -0.435 5.435 14 Si 0.822 3.178 15 H -0.175 1.175 16 H -0.198 1.198 17 H -0.176 1.176 18 H 0.082 0.918 19 H 0.085 0.915 20 H 0.040 0.960 21 H 0.071 0.929 22 H 0.082 0.918 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.102 0.898 26 H 0.108 0.892 27 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.424 9.530 -1.162 9.706 hybrid contribution 0.999 -0.220 -0.479 1.129 sum 2.423 9.310 -1.641 9.759 Atomic orbital electron populations 1.21781 0.95426 1.00247 1.02245 1.21050 0.95908 0.97339 0.96596 1.21748 1.01478 0.93161 1.02740 1.19919 1.01641 0.83784 0.99513 1.26394 0.91990 1.00051 1.04058 1.74144 1.23094 0.95160 1.20441 1.84688 1.37152 1.17246 1.57824 1.76077 0.99315 1.22191 1.24388 1.23368 0.96989 0.85659 0.96787 1.19136 0.99400 0.96787 1.33734 0.87112 1.27112 1.03826 0.93854 0.95096 1.69964 1.38987 1.00342 1.34213 0.84935 0.75239 0.78575 0.79061 1.17482 1.19813 1.17551 0.91789 0.91454 0.96020 0.92877 0.91775 0.91474 0.91489 0.89806 0.89230 0.90278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.33 9.01 71.98 0.65 -3.69 15 2 C -0.09 -2.78 2.91 -10.79 -0.03 -2.81 15 3 C -0.13 -2.96 9.19 71.98 0.66 -2.30 15 4 C -0.01 -0.36 5.32 29.85 0.16 -0.20 15 5 C -0.06 -2.79 6.26 45.40 0.28 -2.50 15 6 N -0.40 -20.31 11.59 -50.75 -0.59 -20.90 15 7 O 0.22 12.39 11.64 140.90 1.64 14.03 15 8 N -0.47 -28.18 10.82 -53.55 -0.58 -28.76 15 9 C 0.12 6.79 7.15 42.46 0.30 7.10 15 10 C -0.45 -23.99 9.51 23.54 0.22 -23.76 15 11 H 0.11 5.20 7.85 -2.91 -0.02 5.17 15 12 C 0.02 0.98 5.50 85.31 0.47 1.45 15 13 N -0.81 -45.25 12.14 21.84 0.27 -44.98 15 14 Si 1.00 37.34 29.56 68.60 2.03 39.37 15 15 H -0.25 -8.77 7.11 99.48 0.71 -8.07 15 16 H -0.27 -9.90 7.11 99.48 0.71 -9.19 15 17 H -0.25 -8.82 7.11 99.48 0.71 -8.11 15 18 H 0.06 1.78 8.14 -2.39 -0.02 1.76 15 19 H 0.07 1.77 8.14 -2.38 -0.02 1.75 15 20 H 0.02 0.81 6.91 -2.39 -0.02 0.79 15 21 H 0.05 1.88 8.14 -2.39 -0.02 1.86 15 22 H 0.06 1.32 8.14 -2.39 -0.02 1.30 15 23 H 0.07 1.30 8.14 -2.39 -0.02 1.28 15 24 H 0.07 1.30 8.14 -2.38 -0.02 1.28 15 25 H 0.08 2.69 8.14 -2.39 -0.02 2.67 15 26 H 0.09 2.99 8.14 -2.39 -0.02 2.97 15 27 H 0.29 14.56 8.29 -92.71 -0.77 13.79 15 Total: -1.00 -65.34 240.09 6.64 -58.70 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: 1.16 Total: 9.27 kcal Atomic # 6 Polarization: -29.43 SS G_CDS: 2.72 Total: -26.72 kcal Atomic # 7 Polarization: -93.75 SS G_CDS: -0.90 Total: -94.65 kcal Atomic # 8 Polarization: 12.39 SS G_CDS: 1.64 Total: 14.03 kcal Atomic # 14 Polarization: 37.34 SS G_CDS: 2.03 Total: 39.37 kcal Total: -65.34 6.64 -58.70 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259583055.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.988 kcal (2) G-P(sol) polarization free energy of solvation -65.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds