Wall clock time and date at job start Mon Mar 30 2020 01:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 113.99968 * 2 1 4 4 C 1.53001 * 109.47117 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47096 * 305.32199 * 4 3 2 6 6 C 1.50707 * 109.46974 * 185.32707 * 4 3 2 7 7 H 1.07997 * 119.99711 * 275.01980 * 6 4 3 8 8 C 1.37878 * 119.99941 * 95.02138 * 6 4 3 9 9 N 1.31518 * 119.99665 * 184.80677 * 8 6 4 10 10 Si 1.86793 * 120.00049 * 4.81340 * 8 6 4 11 11 H 1.48494 * 109.47491 * 84.85804 * 10 8 6 12 12 H 1.48501 * 109.47036 * 204.85574 * 10 8 6 13 13 H 1.48504 * 109.47315 * 324.85408 * 10 8 6 14 14 C 1.50694 * 109.47263 * 65.32770 * 4 3 2 15 15 C 1.34516 * 125.78653 * 240.00053 * 14 4 3 16 16 C 1.41390 * 106.84163 * 179.97438 * 15 14 4 17 17 C 1.34521 * 106.83728 * 359.97438 * 16 15 14 18 18 O 1.34300 * 125.79449 * 59.68661 * 14 4 3 19 19 H 1.08999 * 109.47495 * 59.99326 * 1 2 3 20 20 H 1.08996 * 109.47307 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47120 * 299.99607 * 1 2 3 22 22 H 1.09001 * 109.47412 * 300.00315 * 3 2 1 23 23 H 1.09002 * 109.47199 * 60.00297 * 3 2 1 24 24 H 0.96991 * 119.99727 * 180.02562 * 9 8 6 25 25 H 1.07997 * 126.58035 * 0.03442 * 15 14 4 26 26 H 1.07996 * 126.58436 * 179.97438 * 16 15 14 27 27 H 1.07995 * 125.78397 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8510 0.5636 0.8376 6 6 4.1479 2.5553 0.1313 7 1 4.2991 3.1660 -0.7466 8 6 4.5154 3.0297 1.3727 9 7 4.9617 4.2601 1.5007 10 14 4.3794 1.9246 2.8725 11 1 5.6018 1.0890 2.9842 12 1 4.2380 2.7602 4.0919 13 1 3.1902 1.0460 2.7339 14 6 3.9889 0.5540 -1.2920 15 6 4.6767 -0.5962 -1.4066 16 6 4.8888 -0.8108 -2.7880 17 6 4.3173 0.2210 -3.4348 18 8 3.7697 1.0420 -2.5239 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.6885 1.8465 -0.8899 23 1 1.6886 1.8464 0.8900 24 1 5.2205 4.5937 2.3739 25 1 5.0034 -1.2341 -0.5987 26 1 5.4096 -1.6432 -3.2376 27 1 4.2986 0.3629 -4.5052 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259647338.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:46 Heat of formation + Delta-G solvation = -58.807152 kcal Electronic energy + Delta-G solvation = -12425.434738 eV Core-core repulsion = 10149.294995 eV Total energy + Delta-G solvation = -2276.139743 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.089 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.25901 -38.86998 -35.79013 -33.80971 -33.24534 -29.26329 -27.95959 -25.97168 -23.57172 -22.48156 -20.93201 -19.15223 -18.21337 -17.12023 -16.93732 -16.48717 -16.24862 -15.78161 -15.08061 -14.40986 -14.26772 -13.53935 -13.39425 -13.13625 -12.92284 -12.53705 -12.39983 -12.08991 -11.80893 -11.56705 -10.80986 -10.65295 -10.54969 -9.10337 -8.40283 -6.50136 1.09030 1.34164 1.35272 1.46703 1.92180 2.27469 2.38814 2.81122 3.20498 3.95343 4.25814 4.32481 4.39769 4.48302 4.54024 4.63905 4.80009 4.82793 4.95028 5.09942 5.20686 5.36818 5.45573 5.83016 6.14130 6.31923 6.50207 6.58426 7.16162 8.75521 Molecular weight = 196.09amu Principal moments of inertia in cm(-1) A = 0.027849 B = 0.015413 C = 0.011881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.190262 B = 1816.182191 C = 2356.124810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.414 6.414 3 C 0.075 3.925 4 C 0.090 3.910 5 H 0.068 0.932 6 C -0.524 4.524 7 H 0.035 0.965 8 C 0.027 3.973 9 N -0.932 5.932 10 Si 0.936 3.064 11 H -0.260 1.260 12 H -0.276 1.276 13 H -0.244 1.244 14 C 0.025 3.975 15 C -0.253 4.253 16 C -0.213 4.213 17 C -0.073 4.073 18 O -0.199 6.199 19 H 0.043 0.957 20 H 0.104 0.896 21 H 0.046 0.954 22 H 0.038 0.962 23 H 0.047 0.953 24 H 0.273 0.727 25 H 0.148 0.852 26 H 0.174 0.826 27 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.266 -10.073 -3.811 11.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.334 6.334 3 C -0.001 4.001 4 C 0.072 3.928 5 H 0.086 0.914 6 C -0.561 4.561 7 H 0.054 0.946 8 C -0.173 4.173 9 N -0.570 5.570 10 Si 0.758 3.242 11 H -0.185 1.185 12 H -0.201 1.201 13 H -0.167 1.167 14 C -0.026 4.026 15 C -0.272 4.272 16 C -0.232 4.232 17 C -0.139 4.139 18 O -0.096 6.096 19 H 0.061 0.939 20 H 0.122 0.878 21 H 0.064 0.936 22 H 0.056 0.944 23 H 0.065 0.935 24 H 0.082 0.918 25 H 0.166 0.834 26 H 0.192 0.808 27 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -5.246 -9.822 -3.752 11.750 hybrid contribution 0.114 0.241 0.607 0.663 sum -5.132 -9.581 -3.145 11.314 Atomic orbital electron populations 1.22925 0.80160 1.03759 1.00424 1.87851 1.21186 1.28888 1.95473 1.22896 0.94336 0.83509 0.99404 1.17831 0.91576 0.95151 0.88286 0.91422 1.20807 1.41635 0.99371 0.94287 0.94620 1.25912 0.93292 0.96215 1.01908 1.70011 1.43986 1.17121 1.25875 0.85896 0.80732 0.79392 0.78219 1.18518 1.20113 1.16710 1.22894 1.00420 0.94211 0.85032 1.21757 1.07671 0.99267 0.98549 1.22046 1.06244 1.02110 0.92750 1.24738 1.01596 0.91644 0.95949 1.83980 1.62450 1.47265 1.15893 0.93864 0.87811 0.93551 0.94358 0.93455 0.91755 0.83422 0.80819 0.74801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.68 11.01 113.37 1.25 1.93 15 2 O -0.41 -16.60 10.46 -148.98 -1.56 -18.15 15 3 C 0.08 3.35 5.29 71.98 0.38 3.74 15 4 C 0.09 4.47 2.07 -12.29 -0.03 4.44 15 5 H 0.07 3.27 5.25 -2.39 -0.01 3.26 15 6 C -0.52 -30.28 8.84 25.60 0.23 -30.06 15 7 H 0.04 2.32 8.06 -2.91 -0.02 2.30 15 8 C 0.03 1.52 5.47 84.65 0.46 1.99 15 9 N -0.93 -56.83 13.96 21.45 0.30 -56.53 15 10 Si 0.94 42.73 26.99 68.60 1.85 44.58 15 11 H -0.26 -11.46 7.11 99.48 0.71 -10.75 15 12 H -0.28 -12.15 7.11 99.48 0.71 -11.45 15 13 H -0.24 -10.46 6.82 99.48 0.68 -9.78 15 14 C 0.03 1.17 5.59 24.83 0.14 1.31 15 15 C -0.25 -10.32 10.78 22.19 0.24 -10.08 15 16 C -0.21 -7.13 10.91 22.19 0.24 -6.89 15 17 C -0.07 -2.48 12.09 66.97 0.81 -1.67 15 18 O -0.20 -8.89 10.65 -2.44 -0.03 -8.92 15 19 H 0.04 1.17 8.14 -2.39 -0.02 1.15 15 20 H 0.10 2.40 8.14 -2.39 -0.02 2.38 15 21 H 0.05 1.23 8.14 -2.39 -0.02 1.21 15 22 H 0.04 1.72 8.14 -2.39 -0.02 1.70 15 23 H 0.05 2.09 8.14 -2.39 -0.02 2.07 15 24 H 0.27 15.39 8.31 -92.72 -0.77 14.62 15 25 H 0.15 5.49 8.06 -2.91 -0.02 5.47 15 26 H 0.17 4.36 8.06 -2.91 -0.02 4.33 15 27 H 0.24 5.34 8.06 -2.91 -0.02 5.31 15 Total: -1.00 -67.90 241.65 5.41 -62.50 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: 1.12 Total: 11.83 kcal Atomic # 6 Polarization: -39.02 SS G_CDS: 3.72 Total: -35.30 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: 0.30 Total: -56.53 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -1.58 Total: -27.07 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 1.85 Total: 44.58 kcal Total: -67.90 5.41 -62.50 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259647338.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.691 kcal (2) G-P(sol) polarization free energy of solvation -67.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds