Wall clock time and date at job start Mon Mar 30 2020 02:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35766 * 116.99452 * 2 1 4 4 C 1.35946 * 126.19225 * 94.42925 * 3 2 1 5 5 C 1.50702 * 126.08471 * 359.97438 * 4 3 2 6 6 C 1.50699 * 109.47122 * 84.99987 * 5 4 3 7 7 H 1.07999 * 119.99923 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00188 * 179.97438 * 6 5 4 9 9 N 1.31518 * 120.00126 * 180.02562 * 8 6 5 10 10 Si 1.86796 * 119.99760 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47339 * 90.00028 * 10 8 6 12 12 H 1.48505 * 109.47091 * 209.99879 * 10 8 6 13 13 H 1.48495 * 109.47490 * 329.99736 * 10 8 6 14 14 C 1.39817 * 107.83539 * 179.97438 * 4 3 2 15 15 N 1.30833 * 108.28420 * 359.97438 * 14 4 3 16 16 N 1.35129 * 126.19163 * 274.11417 * 3 2 1 17 17 C 1.46498 * 126.03804 * 0.02562 * 16 3 2 18 18 H 1.08994 * 109.47083 * 59.06272 * 1 2 3 19 19 H 1.09001 * 109.46362 * 179.05526 * 1 2 3 20 20 H 1.09000 * 109.47130 * 299.05341 * 1 2 3 21 21 H 1.08996 * 109.47564 * 205.00331 * 5 4 3 22 22 H 1.09006 * 109.47270 * 325.00657 * 5 4 3 23 23 H 0.96995 * 120.00084 * 180.02562 * 9 8 6 24 24 H 1.07999 * 125.85985 * 179.97438 * 14 4 3 25 25 H 1.08994 * 109.47292 * 84.85840 * 17 16 3 26 26 H 1.09002 * 109.46858 * 204.86130 * 17 16 3 27 27 H 1.09002 * 109.46751 * 324.85578 * 17 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2097 0.0000 4 6 2.4851 1.8866 1.0939 5 6 2.3752 1.4277 2.5251 6 6 3.5396 0.5300 2.8557 7 1 4.2849 0.3137 2.1046 8 6 3.6540 -0.0144 4.1172 9 7 4.6705 -0.7974 4.4058 10 14 2.3653 0.3603 5.4164 11 1 1.2831 -0.6542 5.3473 12 1 2.9932 0.3233 6.7617 13 1 1.7950 1.7096 5.1734 14 6 3.0577 3.0842 0.6548 15 7 2.9677 3.1282 -0.6497 16 7 2.3377 1.9562 -1.0877 17 6 2.0451 1.6035 -2.4792 18 1 -0.3633 0.5283 -0.8814 19 1 -0.3632 -1.0276 -0.0169 20 1 -0.3633 0.4991 0.8984 21 1 2.3853 2.2942 3.1863 22 1 1.4433 0.8785 2.6601 23 1 4.7508 -1.1807 5.2932 24 1 3.4986 3.8428 1.2844 25 1 1.0251 1.9007 -2.7226 26 1 2.7416 2.1207 -3.1392 27 1 2.1512 0.5267 -2.6110 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259760642.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:53 Heat of formation + Delta-G solvation = 44.687221 kcal Electronic energy + Delta-G solvation = -12343.379553 eV Core-core repulsion = 10104.020413 eV Total energy + Delta-G solvation = -2239.359139 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.78802 -37.45089 -33.69838 -32.37145 -30.42179 -28.17674 -26.34833 -25.78792 -22.25714 -20.57837 -19.62781 -17.16146 -16.69494 -15.75073 -15.19149 -14.42326 -14.23419 -13.99581 -13.23310 -12.95128 -12.43195 -12.38879 -12.00390 -11.73774 -11.38591 -10.95733 -10.50693 -10.06406 -9.97692 -9.54400 -9.25419 -8.72915 -8.46119 -7.46849 -5.94969 -3.91533 2.16313 2.80960 3.35331 3.39153 3.42659 3.45518 4.15130 4.51342 4.90781 5.27596 5.30954 5.36842 5.49982 5.54705 5.60492 5.73372 6.13117 6.24057 6.64875 6.76836 7.08904 7.26434 7.43584 7.82402 8.04391 8.21980 8.66137 9.12506 9.66085 11.18820 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.044737 B = 0.011178 C = 0.010282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.734121 B = 2504.288282 C = 2722.652058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.296 6.296 3 C 0.228 3.772 4 C -0.176 4.176 5 C 0.057 3.943 6 C -0.502 4.502 7 H 0.071 0.929 8 C 0.066 3.934 9 N -0.905 5.905 10 Si 0.877 3.123 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.265 1.265 14 C 0.055 3.945 15 N -0.295 5.295 16 N -0.395 5.395 17 C 0.106 3.894 18 H 0.038 0.962 19 H 0.096 0.904 20 H 0.053 0.947 21 H 0.027 0.973 22 H 0.017 0.983 23 H 0.262 0.738 24 H 0.184 0.816 25 H 0.063 0.937 26 H 0.086 0.914 27 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.046 4.228 -9.470 13.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.205 6.205 3 C 0.063 3.937 4 C -0.187 4.187 5 C 0.019 3.981 6 C -0.540 4.540 7 H 0.089 0.911 8 C -0.135 4.135 9 N -0.544 5.544 10 Si 0.704 3.296 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.189 1.189 14 C -0.129 4.129 15 N -0.120 5.120 16 N -0.189 5.189 17 C -0.036 4.036 18 H 0.056 0.944 19 H 0.115 0.885 20 H 0.071 0.929 21 H 0.045 0.955 22 H 0.035 0.965 23 H 0.072 0.928 24 H 0.201 0.799 25 H 0.081 0.919 26 H 0.105 0.895 27 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.704 4.481 -10.474 14.337 hybrid contribution -0.913 -0.384 1.322 1.652 sum -9.617 4.097 -9.152 13.894 Atomic orbital electron populations 1.23036 0.79538 1.03220 1.00507 1.86203 1.19557 1.21651 1.93102 1.18738 1.01605 0.86571 0.86831 1.20309 1.06642 0.94869 0.96897 1.18072 0.97424 0.96225 0.86413 1.21019 1.07845 1.27209 0.97912 0.91090 1.24992 0.95455 0.94815 0.98197 1.69911 1.30246 1.32993 1.21285 0.86826 0.82140 0.79408 0.81224 1.20372 1.21399 1.18924 1.23596 0.99375 0.98303 0.91629 1.77273 1.19632 1.01792 1.13343 1.48738 1.48777 1.15443 1.05903 1.21662 1.01314 1.01664 0.78995 0.94353 0.88529 0.92874 0.95459 0.96509 0.92832 0.79914 0.91861 0.89540 0.90018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.13 101.05 1.12 1.59 15 2 O -0.30 -5.84 10.45 -19.01 -0.20 -6.04 15 3 C 0.23 4.74 6.94 -16.92 -0.12 4.63 15 4 C -0.18 -3.95 5.31 -104.85 -0.56 -4.51 15 5 C 0.06 1.42 4.50 -29.03 -0.13 1.28 15 6 C -0.50 -14.78 9.65 -34.44 -0.33 -15.11 15 7 H 0.07 2.32 7.98 -52.49 -0.42 1.90 15 8 C 0.07 1.95 5.47 -17.82 -0.10 1.85 15 9 N -0.90 -28.45 13.96 55.43 0.77 -27.67 15 10 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 15 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 15 13 H -0.26 -6.22 6.54 56.52 0.37 -5.85 15 14 C 0.06 1.11 11.95 -17.39 -0.21 0.90 15 15 N -0.30 -5.76 12.57 30.61 0.38 -5.38 15 16 N -0.39 -7.27 4.02 -68.28 -0.27 -7.55 15 17 C 0.11 1.35 11.42 59.85 0.68 2.03 15 18 H 0.04 0.45 8.14 -51.93 -0.42 0.03 15 19 H 0.10 1.13 8.14 -51.93 -0.42 0.70 15 20 H 0.05 0.77 8.14 -51.93 -0.42 0.35 15 21 H 0.03 0.65 7.20 -51.93 -0.37 0.28 15 22 H 0.02 0.41 7.57 -51.93 -0.39 0.02 15 23 H 0.26 7.68 8.31 -40.82 -0.34 7.34 15 24 H 0.18 3.11 8.06 -52.49 -0.42 2.69 15 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 15 26 H 0.09 0.97 8.14 -51.93 -0.42 0.55 15 27 H 0.08 0.96 8.14 -51.93 -0.42 0.54 15 LS Contribution 243.55 15.07 3.67 3.67 Total: -1.00 -34.20 243.55 -3.26 -37.46 By element: Atomic # 1 Polarization: -0.91 SS G_CDS: -3.31 Total: -4.23 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: 0.37 Total: -7.34 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.88 Total: -40.60 kcal Atomic # 8 Polarization: -5.84 SS G_CDS: -0.20 Total: -6.04 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -34.20 -3.26 -37.46 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259760642.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.150 kcal (2) G-P(sol) polarization free energy of solvation -34.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds