Wall clock time and date at job start Mon Mar 30 2020 02:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35766 * 116.99452 * 2 1 4 4 C 1.35946 * 126.19225 * 94.42925 * 3 2 1 5 5 C 1.50702 * 126.08471 * 359.97438 * 4 3 2 6 6 C 1.50699 * 109.47122 * 84.99987 * 5 4 3 7 7 H 1.07999 * 119.99923 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00188 * 179.97438 * 6 5 4 9 9 N 1.31518 * 120.00126 * 180.02562 * 8 6 5 10 10 Si 1.86796 * 119.99760 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47339 * 90.00028 * 10 8 6 12 12 H 1.48505 * 109.47091 * 209.99879 * 10 8 6 13 13 H 1.48495 * 109.47490 * 329.99736 * 10 8 6 14 14 C 1.39817 * 107.83539 * 179.97438 * 4 3 2 15 15 N 1.30833 * 108.28420 * 359.97438 * 14 4 3 16 16 N 1.35129 * 126.19163 * 274.11417 * 3 2 1 17 17 C 1.46498 * 126.03804 * 0.02562 * 16 3 2 18 18 H 1.08994 * 109.47083 * 59.06272 * 1 2 3 19 19 H 1.09001 * 109.46362 * 179.05526 * 1 2 3 20 20 H 1.09000 * 109.47130 * 299.05341 * 1 2 3 21 21 H 1.08996 * 109.47564 * 205.00331 * 5 4 3 22 22 H 1.09006 * 109.47270 * 325.00657 * 5 4 3 23 23 H 0.96995 * 120.00084 * 180.02562 * 9 8 6 24 24 H 1.07999 * 125.85985 * 179.97438 * 14 4 3 25 25 H 1.08994 * 109.47292 * 84.85840 * 17 16 3 26 26 H 1.09002 * 109.46858 * 204.86130 * 17 16 3 27 27 H 1.09002 * 109.46751 * 324.85578 * 17 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2097 0.0000 4 6 2.4851 1.8866 1.0939 5 6 2.3752 1.4277 2.5251 6 6 3.5396 0.5300 2.8557 7 1 4.2849 0.3137 2.1046 8 6 3.6540 -0.0144 4.1172 9 7 4.6705 -0.7974 4.4058 10 14 2.3653 0.3603 5.4164 11 1 1.2831 -0.6542 5.3473 12 1 2.9932 0.3233 6.7617 13 1 1.7950 1.7096 5.1734 14 6 3.0577 3.0842 0.6548 15 7 2.9677 3.1282 -0.6497 16 7 2.3377 1.9562 -1.0877 17 6 2.0451 1.6035 -2.4792 18 1 -0.3633 0.5283 -0.8814 19 1 -0.3632 -1.0276 -0.0169 20 1 -0.3633 0.4991 0.8984 21 1 2.3853 2.2942 3.1863 22 1 1.4433 0.8785 2.6601 23 1 4.7508 -1.1807 5.2932 24 1 3.4986 3.8428 1.2844 25 1 1.0251 1.9007 -2.7226 26 1 2.7416 2.1207 -3.1392 27 1 2.1512 0.5267 -2.6110 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259760642.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:53 Heat of formation + Delta-G solvation = 19.153816 kcal Electronic energy + Delta-G solvation = -12344.486764 eV Core-core repulsion = 10104.020413 eV Total energy + Delta-G solvation = -2240.466351 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.28241 -38.88113 -35.55327 -34.12688 -32.21632 -29.67104 -27.67865 -27.29999 -24.20745 -22.02231 -21.22386 -18.90869 -18.59370 -17.17329 -16.58054 -16.31893 -15.61970 -15.45645 -14.77097 -14.59323 -14.02651 -13.71081 -13.62312 -13.33810 -12.78325 -12.61227 -12.33878 -11.87699 -11.74076 -11.50714 -11.03263 -10.69775 -10.15251 -9.09628 -8.21957 -6.25544 0.69167 1.40703 1.43225 1.45410 1.55870 1.81889 2.42215 2.79286 3.12150 3.65715 4.25309 4.35559 4.37200 4.41684 4.54544 4.60058 4.67079 4.70760 5.02108 5.13489 5.38324 5.55515 5.63964 5.76267 6.36471 6.59392 6.71329 6.79890 7.36674 8.95648 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.044737 B = 0.011178 C = 0.010282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.734121 B = 2504.288282 C = 2722.652058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.323 6.323 3 C 0.233 3.767 4 C -0.225 4.225 5 C 0.068 3.932 6 C -0.511 4.511 7 H 0.016 0.984 8 C 0.003 3.997 9 N -0.956 5.956 10 Si 0.954 3.046 11 H -0.267 1.267 12 H -0.284 1.284 13 H -0.240 1.240 14 C 0.052 3.948 15 N -0.301 5.301 16 N -0.389 5.389 17 C 0.093 3.907 18 H 0.065 0.935 19 H 0.122 0.878 20 H 0.048 0.952 21 H 0.037 0.963 22 H 0.021 0.979 23 H 0.266 0.734 24 H 0.204 0.796 25 H 0.093 0.907 26 H 0.102 0.898 27 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.202 4.992 -9.914 15.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.066 3.934 4 C -0.237 4.237 5 C 0.030 3.970 6 C -0.549 4.549 7 H 0.035 0.965 8 C -0.193 4.193 9 N -0.597 5.597 10 Si 0.776 3.224 11 H -0.192 1.192 12 H -0.209 1.209 13 H -0.163 1.163 14 C -0.132 4.132 15 N -0.127 5.127 16 N -0.183 5.183 17 C -0.046 4.046 18 H 0.084 0.916 19 H 0.141 0.859 20 H 0.067 0.933 21 H 0.056 0.944 22 H 0.039 0.961 23 H 0.074 0.926 24 H 0.221 0.779 25 H 0.112 0.888 26 H 0.121 0.879 27 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.876 5.262 -10.967 16.317 hybrid contribution -0.218 -0.708 1.291 1.488 sum -11.094 4.554 -9.676 15.409 Atomic orbital electron populations 1.23352 0.76473 1.05401 1.01622 1.86134 1.22530 1.21323 1.93299 1.18822 1.00838 0.86381 0.87377 1.20278 1.10058 0.96949 0.96427 1.17835 0.95214 0.95402 0.88557 1.21241 1.08382 1.28340 0.96986 0.96509 1.26027 0.98028 0.94324 1.00933 1.70086 1.32816 1.34576 1.22248 0.85608 0.78849 0.80596 0.77299 1.19165 1.20949 1.16309 1.23886 0.99075 0.98148 0.92076 1.77230 1.19911 1.02552 1.12976 1.49111 1.47350 1.14497 1.07320 1.22120 1.03597 1.02670 0.76261 0.91606 0.85949 0.93327 0.94429 0.96128 0.92561 0.77891 0.88823 0.87910 0.89053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 11.13 113.37 1.26 1.94 15 2 O -0.32 -12.39 10.45 -90.93 -0.95 -13.34 15 3 C 0.23 9.52 6.94 83.65 0.58 10.10 15 4 C -0.23 -10.10 5.31 -20.01 -0.11 -10.21 15 5 C 0.07 3.37 4.50 29.10 0.13 3.50 15 6 C -0.51 -30.97 9.65 25.60 0.25 -30.72 15 7 H 0.02 1.15 7.98 -2.91 -0.02 1.13 15 8 C 0.00 0.16 5.47 84.65 0.46 0.62 15 9 N -0.96 -61.75 13.96 21.45 0.30 -61.45 15 10 Si 0.95 44.49 27.47 68.60 1.88 46.38 15 11 H -0.27 -11.90 7.11 99.48 0.71 -11.19 15 12 H -0.28 -12.95 7.11 99.48 0.71 -12.25 15 13 H -0.24 -10.17 6.54 99.48 0.65 -9.52 15 14 C 0.05 2.05 11.95 85.22 1.02 3.07 15 15 N -0.30 -11.36 12.57 -57.06 -0.72 -12.08 15 16 N -0.39 -13.68 4.02 -481.26 -1.93 -15.61 15 17 C 0.09 2.12 11.42 127.77 1.46 3.58 15 18 H 0.07 1.34 8.14 -2.39 -0.02 1.32 15 19 H 0.12 2.50 8.14 -2.39 -0.02 2.48 15 20 H 0.05 1.31 8.14 -2.39 -0.02 1.29 15 21 H 0.04 1.75 7.20 -2.39 -0.02 1.73 15 22 H 0.02 0.98 7.57 -2.38 -0.02 0.97 15 23 H 0.27 15.90 8.31 -92.71 -0.77 15.13 15 24 H 0.20 6.77 8.06 -2.91 -0.02 6.74 15 25 H 0.09 1.60 8.14 -2.39 -0.02 1.58 15 26 H 0.10 2.01 8.14 -2.39 -0.02 1.99 15 27 H 0.09 1.92 8.14 -2.39 -0.02 1.90 15 Total: -1.00 -75.65 243.55 4.73 -70.91 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: 1.10 Total: 3.31 kcal Atomic # 6 Polarization: -23.17 SS G_CDS: 5.05 Total: -18.12 kcal Atomic # 7 Polarization: -86.79 SS G_CDS: -2.35 Total: -89.14 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: -0.95 Total: -13.34 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.88 Total: 46.38 kcal Total: -75.65 4.73 -70.91 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259760642.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.068 kcal (2) G-P(sol) polarization free energy of solvation -75.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds