Wall clock time and date at job start Mon Mar 30 2020 02:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42907 * 114.00051 * 2 1 4 4 C 1.50708 * 109.47308 * 180.02562 * 3 2 1 5 5 N 1.31014 * 125.17320 * 269.70027 * 4 3 2 6 6 C 1.33018 * 109.97497 * 180.26289 * 5 4 3 7 7 C 1.39617 * 107.46410 * 359.97438 * 6 5 4 8 8 C 1.40068 * 127.06005 * 180.02562 * 7 6 5 9 9 H 1.07993 * 120.00203 * 179.97438 * 8 7 6 10 10 C 1.40075 * 119.99805 * 359.94601 * 8 7 6 11 11 N 1.30858 * 120.00091 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99884 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.46867 * 60.00746 * 12 10 8 14 14 H 1.48497 * 109.47413 * 180.02562 * 12 10 8 15 15 H 1.48493 * 109.47576 * 300.00670 * 12 10 8 16 16 N 1.35074 * 125.17607 * 89.99778 * 4 3 2 17 17 C 1.46497 * 126.48433 * 359.73762 * 16 4 3 18 18 H 1.09002 * 109.46997 * 59.99748 * 1 2 3 19 19 H 1.08999 * 109.47273 * 180.02562 * 1 2 3 20 20 H 1.09002 * 109.46878 * 300.00188 * 1 2 3 21 21 H 1.09001 * 109.47021 * 60.00254 * 3 2 1 22 22 H 1.08997 * 109.47059 * 299.99983 * 3 2 1 23 23 H 1.08005 * 126.26811 * 180.02562 * 6 5 4 24 24 H 0.97002 * 119.99561 * 179.97438 * 11 10 8 25 25 H 1.08999 * 109.47237 * 89.99979 * 17 16 4 26 26 H 1.08994 * 109.47400 * 209.99922 * 17 16 4 27 27 H 1.09000 * 109.47498 * 330.00090 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1866 -0.0006 5 7 4.2658 1.1324 1.0700 6 6 5.5456 1.0350 0.7207 7 6 5.5997 1.0269 -0.6744 8 6 6.7462 0.9378 -1.4742 9 1 6.6555 0.9412 -2.5503 10 6 8.0104 0.8449 -0.8782 11 7 8.1203 0.8409 0.4258 12 14 9.5394 0.7268 -1.9447 13 1 9.6366 1.9327 -2.8058 14 1 10.7420 0.6387 -1.0780 15 1 9.4552 -0.4854 -2.7983 16 7 4.2878 1.1253 -1.1050 17 6 3.8273 1.1565 -2.4954 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 1.6886 1.8464 0.8900 22 1 1.6886 1.8464 -0.8900 23 1 6.3885 0.9727 1.3932 24 1 8.9958 0.7761 0.8385 25 1 3.7904 2.1890 -2.8428 26 1 4.5167 0.5877 -3.1193 27 1 2.8323 0.7161 -2.5586 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259795128.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:37 Heat of formation + Delta-G solvation = 3.587527 kcal Electronic energy + Delta-G solvation = -12247.990283 eV Core-core repulsion = 10006.848927 eV Total energy + Delta-G solvation = -2241.141356 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.95340 -37.15433 -33.65376 -32.48396 -29.66902 -27.44373 -25.69516 -25.50955 -23.25958 -19.91281 -18.48279 -17.00567 -15.98514 -15.65293 -15.09410 -14.88464 -14.02310 -13.83655 -13.03340 -12.46850 -12.08458 -11.74795 -11.71129 -11.39785 -11.25758 -11.05966 -10.76535 -10.60136 -10.17626 -9.39013 -9.27557 -8.20092 -8.05423 -6.90064 -6.63221 -4.24596 2.95714 3.08421 3.10726 3.47885 3.91332 4.24380 4.45403 4.97512 5.42238 5.46973 5.51669 5.67056 5.72214 5.78816 5.85922 6.00677 6.09312 6.15976 7.00208 7.13430 7.60998 7.64756 7.84427 7.98364 8.49111 8.87659 9.03543 9.11494 9.98359 10.32163 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.071509 B = 0.009246 C = 0.008496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.464643 B = 3027.463146 C = 3295.018951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.173 3.827 4 C 0.059 3.941 5 N -0.462 5.462 6 C -0.128 4.128 7 C 0.185 3.815 8 C -0.443 4.443 9 H 0.071 0.929 10 C 0.073 3.927 11 N -0.799 5.799 12 Si 0.927 3.073 13 H -0.267 1.267 14 H -0.277 1.277 15 H -0.267 1.267 16 N -0.491 5.491 17 C 0.097 3.903 18 H 0.034 0.966 19 H 0.079 0.921 20 H 0.037 0.963 21 H 0.061 0.939 22 H 0.043 0.957 23 H 0.187 0.813 24 H 0.280 0.720 25 H 0.050 0.950 26 H 0.072 0.928 27 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.442 0.630 -4.729 8.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C 0.096 3.904 4 C -0.190 4.190 5 N -0.182 5.182 6 C -0.279 4.279 7 C 0.073 3.927 8 C -0.478 4.478 9 H 0.089 0.911 10 C -0.144 4.144 11 N -0.427 5.427 12 Si 0.752 3.248 13 H -0.192 1.192 14 H -0.202 1.202 15 H -0.192 1.192 16 N -0.185 5.185 17 C -0.047 4.047 18 H 0.052 0.948 19 H 0.097 0.903 20 H 0.056 0.944 21 H 0.079 0.921 22 H 0.061 0.939 23 H 0.204 0.796 24 H 0.091 0.909 25 H 0.069 0.931 26 H 0.090 0.910 27 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.603 0.486 -3.828 7.648 hybrid contribution 0.763 0.116 -1.440 1.634 sum -5.840 0.602 -5.268 7.888 Atomic orbital electron populations 1.22652 0.82493 1.02042 0.99342 1.88095 1.18243 1.29189 1.95189 1.20174 0.86993 0.83844 0.99392 1.21351 0.91897 1.23056 0.82733 1.69384 1.04725 1.15455 1.28671 1.23448 0.92132 1.19415 0.92888 1.19097 0.81524 0.97674 0.94411 1.18350 0.89062 1.46841 0.93567 0.91064 1.25682 1.00378 0.93076 0.95273 1.69605 1.25940 1.36908 1.10200 0.86070 0.79394 0.79541 0.79829 1.19212 1.20208 1.19198 1.44724 1.07169 1.61680 1.04929 1.21468 0.99792 1.00987 0.82493 0.94775 0.90270 0.94420 0.92065 0.93886 0.79618 0.90871 0.93143 0.90961 0.91844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.55 15 2 O -0.39 -7.69 10.69 -35.23 -0.38 -8.07 15 3 C 0.17 3.48 6.01 36.01 0.22 3.69 15 4 C 0.06 1.52 7.50 -154.95 -1.16 0.35 15 5 N -0.46 -13.21 11.18 -9.76 -0.11 -13.32 15 6 C -0.13 -3.80 10.88 -16.52 -0.18 -3.98 15 7 C 0.19 5.25 6.74 -83.68 -0.56 4.68 15 8 C -0.44 -11.94 9.05 -38.21 -0.35 -12.28 15 9 H 0.07 1.79 7.30 -52.49 -0.38 1.40 15 10 C 0.07 1.86 5.50 -17.28 -0.09 1.77 15 11 N -0.80 -21.17 10.35 55.56 0.57 -20.60 15 12 Si 0.93 18.91 29.56 -169.99 -5.03 13.89 15 13 H -0.27 -5.35 7.11 56.52 0.40 -4.95 15 14 H -0.28 -5.50 7.11 56.52 0.40 -5.10 15 15 H -0.27 -5.38 7.11 56.52 0.40 -4.97 15 16 N -0.49 -12.38 3.20 -118.33 -0.38 -12.76 15 17 C 0.10 1.87 10.57 59.85 0.63 2.50 15 18 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 15 19 H 0.08 0.94 8.14 -51.93 -0.42 0.52 15 20 H 0.04 0.46 8.14 -51.93 -0.42 0.04 15 21 H 0.06 1.16 8.14 -51.93 -0.42 0.73 15 22 H 0.04 0.74 7.67 -51.93 -0.40 0.34 15 23 H 0.19 5.62 5.78 -52.48 -0.30 5.32 15 24 H 0.28 6.73 8.30 -40.82 -0.34 6.39 15 25 H 0.05 0.87 8.14 -51.93 -0.42 0.45 15 26 H 0.07 1.34 7.50 -51.93 -0.39 0.95 15 27 H 0.06 1.08 7.63 -51.93 -0.40 0.68 15 LS Contribution 238.44 15.07 3.59 3.59 Total: -1.00 -31.99 238.44 -5.23 -37.21 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -3.12 Total: 1.77 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -0.39 Total: -1.72 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: 0.09 Total: -46.68 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: -0.38 Total: -8.07 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.89 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -31.99 -5.23 -37.21 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259795128.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.798 kcal (2) G-P(sol) polarization free energy of solvation -31.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds