Wall clock time and date at job start Mon Mar 30 2020 02:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00397 * 2 1 4 4 C 1.50696 * 109.47063 * 179.97438 * 3 2 1 5 5 C 1.34666 * 126.59589 * 0.02562 * 4 3 2 6 6 N 1.34121 * 108.02399 * 179.97438 * 5 4 3 7 7 C 1.30504 * 109.25569 * 359.97438 * 6 5 4 8 8 C 1.50700 * 125.64954 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.46838 * 305.02561 * 8 7 6 10 10 H 1.07998 * 120.00099 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99748 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00111 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 119.99796 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47529 * 59.99843 * 13 11 9 15 15 H 1.48504 * 109.46790 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47367 * 299.99590 * 13 11 9 17 17 N 1.35039 * 108.70033 * 0.02562 * 7 6 5 18 18 H 0.97003 * 126.39946 * 180.02562 * 17 7 6 19 19 H 1.09004 * 109.46711 * 60.00365 * 1 2 3 20 20 H 1.08994 * 109.47640 * 180.02562 * 1 2 3 21 21 H 1.09006 * 109.47463 * 300.00720 * 1 2 3 22 22 H 1.08999 * 109.47005 * 59.99530 * 3 2 1 23 23 H 1.09007 * 109.46765 * 299.99779 * 3 2 1 24 24 H 1.08001 * 125.98583 * 0.02562 * 5 4 3 25 25 H 1.08997 * 109.47062 * 65.02251 * 8 7 6 26 26 H 1.09000 * 109.47161 * 185.02582 * 8 7 6 27 27 H 0.96991 * 120.00218 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 6 4.2274 0.0451 0.0007 6 7 5.5286 0.3704 0.0007 7 6 5.6472 1.6700 0.0002 8 6 6.9466 2.4334 0.0007 9 6 7.7920 1.9852 1.1650 10 1 7.4253 1.2235 1.8370 11 6 9.0338 2.5476 1.3721 12 7 9.4806 3.4748 0.5534 13 14 10.0820 1.9915 2.8148 14 1 10.3623 0.5384 2.6921 15 1 11.3624 2.7439 2.8153 16 1 9.3550 2.2500 4.0836 17 7 4.4128 2.2175 0.0004 18 1 4.2031 3.1646 -0.0003 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5140 0.8899 22 1 1.6886 1.8464 0.8899 23 1 1.6887 1.8463 -0.8901 24 1 3.8237 -0.9566 -0.0002 25 1 7.4802 2.2428 -0.9304 26 1 6.7413 3.5001 0.0901 27 1 10.3542 3.8702 0.6989 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259832511.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:06 Heat of formation + Delta-G solvation = 3.150177 kcal Electronic energy + Delta-G solvation = -11775.622467 eV Core-core repulsion = 9534.462146 eV Total energy + Delta-G solvation = -2241.160321 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.30089 -37.80089 -33.31322 -31.87446 -30.92468 -28.67931 -26.31204 -24.78402 -23.01127 -20.41605 -19.59899 -16.95245 -16.35540 -16.08563 -15.96138 -14.77963 -14.41964 -14.19900 -13.21420 -12.68461 -12.63702 -12.24799 -11.81932 -11.45934 -11.39950 -10.75932 -10.67701 -9.93778 -9.85148 -9.41154 -9.22039 -9.06281 -8.43585 -7.43076 -6.04402 -4.05555 2.70027 3.26465 3.37410 3.40154 3.45910 4.02301 4.22621 4.49966 4.99832 5.15735 5.24681 5.27979 5.32787 5.42773 5.49803 5.68815 6.13937 6.30088 6.77738 7.13010 7.22877 7.43943 7.55985 7.94233 8.06212 8.33133 8.97919 9.04452 9.57597 11.06483 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.082454 B = 0.006885 C = 0.006643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 339.501355 B = 4065.553051 C = 4213.876544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.379 6.379 3 C 0.155 3.845 4 C -0.084 4.084 5 C 0.004 3.996 6 N -0.498 5.498 7 C 0.270 3.730 8 C 0.095 3.905 9 C -0.502 4.502 10 H 0.064 0.936 11 C 0.056 3.944 12 N -0.899 5.899 13 Si 0.902 3.098 14 H -0.274 1.274 15 H -0.287 1.287 16 H -0.277 1.277 17 N -0.572 5.572 18 H 0.411 0.589 19 H 0.040 0.960 20 H 0.088 0.912 21 H 0.041 0.959 22 H 0.054 0.946 23 H 0.053 0.947 24 H 0.162 0.838 25 H 0.050 0.950 26 H 0.033 0.967 27 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.223 -1.343 -1.126 15.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.297 6.297 3 C 0.077 3.923 4 C -0.197 4.197 5 C -0.145 4.145 6 N -0.217 5.217 7 C 0.006 3.994 8 C 0.056 3.944 9 C -0.541 4.541 10 H 0.082 0.918 11 C -0.145 4.145 12 N -0.539 5.539 13 Si 0.730 3.270 14 H -0.199 1.199 15 H -0.213 1.213 16 H -0.203 1.203 17 N -0.177 5.177 18 H 0.248 0.752 19 H 0.059 0.941 20 H 0.106 0.894 21 H 0.059 0.941 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.180 0.820 25 H 0.068 0.932 26 H 0.051 0.949 27 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.326 -2.032 -1.162 14.516 hybrid contribution -0.491 1.018 0.767 1.366 sum -14.817 -1.014 -0.395 14.857 Atomic orbital electron populations 1.22745 0.80772 1.02906 0.99891 1.87863 1.19493 1.26937 1.95378 1.20203 0.87617 0.84801 0.99705 1.20357 0.91296 0.89720 1.18374 1.22066 0.89275 0.97598 1.05581 1.70410 1.18083 1.11773 1.21420 1.24643 0.87163 0.89748 0.97817 1.17876 0.83823 0.93130 0.99578 1.20962 1.00936 1.21733 1.10518 0.91803 1.24982 0.97614 0.95000 0.96860 1.69932 1.19507 1.27059 1.37381 0.86487 0.79189 0.78989 0.82379 1.19949 1.21317 1.20292 1.43162 1.06867 1.08690 1.58936 0.75223 0.94093 0.89375 0.94074 0.92841 0.92888 0.82047 0.93228 0.94902 0.92742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 15 2 O -0.38 -5.11 10.03 -35.23 -0.35 -5.46 15 3 C 0.15 2.06 6.56 36.00 0.24 2.29 15 4 C -0.08 -1.50 7.21 -81.60 -0.59 -2.09 15 5 C 0.00 0.08 11.22 -17.82 -0.20 -0.12 15 6 N -0.50 -12.14 11.20 -10.82 -0.12 -12.26 15 7 C 0.27 6.31 7.37 -155.42 -1.15 5.17 15 8 C 0.09 2.45 5.60 -29.03 -0.16 2.29 15 9 C -0.50 -14.44 9.06 -34.44 -0.31 -14.75 15 10 H 0.06 1.88 7.74 -52.49 -0.41 1.48 15 11 C 0.06 1.61 5.46 -17.82 -0.10 1.51 15 12 N -0.90 -26.40 13.29 55.43 0.74 -25.66 15 13 Si 0.90 22.04 29.54 -169.99 -5.02 17.01 15 14 H -0.27 -6.69 7.11 56.52 0.40 -6.29 15 15 H -0.29 -6.87 7.11 56.52 0.40 -6.46 15 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 17 N -0.57 -10.69 6.15 -6.54 -0.04 -10.73 15 18 H 0.41 6.19 8.96 -40.82 -0.37 5.82 15 19 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 15 20 H 0.09 0.65 8.14 -51.93 -0.42 0.23 15 21 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 15 22 H 0.05 0.63 8.14 -51.93 -0.42 0.21 15 23 H 0.05 0.61 8.14 -51.93 -0.42 0.18 15 24 H 0.16 3.00 7.87 -52.49 -0.41 2.59 15 25 H 0.05 1.36 8.14 -51.93 -0.42 0.94 15 26 H 0.03 0.83 8.14 -51.93 -0.42 0.41 15 27 H 0.26 7.31 8.31 -40.82 -0.34 6.97 15 LS Contribution 244.90 15.07 3.69 3.69 Total: -1.00 -32.56 244.90 -5.55 -38.11 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: -3.28 Total: -0.41 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -1.16 Total: -4.29 kcal Atomic # 7 Polarization: -49.23 SS G_CDS: 0.57 Total: -48.66 kcal Atomic # 8 Polarization: -5.11 SS G_CDS: -0.35 Total: -5.46 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -32.56 -5.55 -38.11 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259832511.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.255 kcal (2) G-P(sol) polarization free energy of solvation -32.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds