Wall clock time and date at job start Mon Mar 30 2020 02:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00397 * 2 1 4 4 C 1.50696 * 109.47063 * 179.97438 * 3 2 1 5 5 C 1.34666 * 126.59589 * 0.02562 * 4 3 2 6 6 N 1.34121 * 108.02399 * 179.97438 * 5 4 3 7 7 C 1.30504 * 109.25569 * 359.97438 * 6 5 4 8 8 C 1.50700 * 125.64954 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.46838 * 305.02561 * 8 7 6 10 10 H 1.07998 * 120.00099 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99748 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00111 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 119.99796 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47529 * 59.99843 * 13 11 9 15 15 H 1.48504 * 109.46790 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47367 * 299.99590 * 13 11 9 17 17 N 1.35039 * 108.70033 * 0.02562 * 7 6 5 18 18 H 0.97003 * 126.39946 * 180.02562 * 17 7 6 19 19 H 1.09004 * 109.46711 * 60.00365 * 1 2 3 20 20 H 1.08994 * 109.47640 * 180.02562 * 1 2 3 21 21 H 1.09006 * 109.47463 * 300.00720 * 1 2 3 22 22 H 1.08999 * 109.47005 * 59.99530 * 3 2 1 23 23 H 1.09007 * 109.46765 * 299.99779 * 3 2 1 24 24 H 1.08001 * 125.98583 * 0.02562 * 5 4 3 25 25 H 1.08997 * 109.47062 * 65.02251 * 8 7 6 26 26 H 1.09000 * 109.47161 * 185.02582 * 8 7 6 27 27 H 0.96991 * 120.00218 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 6 4.2274 0.0451 0.0007 6 7 5.5286 0.3704 0.0007 7 6 5.6472 1.6700 0.0002 8 6 6.9466 2.4334 0.0007 9 6 7.7920 1.9852 1.1650 10 1 7.4253 1.2235 1.8370 11 6 9.0338 2.5476 1.3721 12 7 9.4806 3.4748 0.5534 13 14 10.0820 1.9915 2.8148 14 1 10.3623 0.5384 2.6921 15 1 11.3624 2.7439 2.8153 16 1 9.3550 2.2500 4.0836 17 7 4.4128 2.2175 0.0004 18 1 4.2031 3.1646 -0.0003 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5140 0.8899 22 1 1.6886 1.8464 0.8899 23 1 1.6887 1.8463 -0.8901 24 1 3.8237 -0.9566 -0.0002 25 1 7.4802 2.2428 -0.9304 26 1 6.7413 3.5001 0.0901 27 1 10.3542 3.8702 0.6989 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259832511.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:06 Heat of formation + Delta-G solvation = -20.199831 kcal Electronic energy + Delta-G solvation = -11776.634999 eV Core-core repulsion = 9534.462146 eV Total energy + Delta-G solvation = -2242.172853 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.91438 -38.74233 -35.42017 -33.50623 -32.63402 -30.24336 -27.41412 -26.16465 -24.93565 -21.99695 -21.23572 -18.47645 -18.42951 -17.11481 -16.96257 -16.48330 -15.88039 -15.71028 -14.77018 -14.44876 -14.05220 -13.57832 -13.45480 -13.24775 -12.67720 -12.61773 -12.26437 -11.93306 -11.55339 -10.94854 -10.76136 -10.69429 -10.60532 -9.03229 -8.21579 -6.31563 1.13845 1.41541 1.45125 1.53223 1.99016 2.29159 2.46446 3.10020 3.12786 3.81373 4.06312 4.25434 4.40743 4.50877 4.61123 4.63928 4.65737 4.91549 5.16892 5.27177 5.39199 5.71285 5.94656 6.09275 6.20797 6.63237 6.75975 7.35351 7.37902 8.88247 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.082454 B = 0.006885 C = 0.006643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 339.501355 B = 4065.553051 C = 4213.876544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.407 6.407 3 C 0.156 3.844 4 C -0.048 4.048 5 C -0.034 4.034 6 N -0.534 5.534 7 C 0.236 3.764 8 C 0.105 3.895 9 C -0.524 4.524 10 H 0.049 0.951 11 C 0.010 3.990 12 N -0.926 5.926 13 Si 0.966 3.034 14 H -0.275 1.275 15 H -0.276 1.276 16 H -0.268 1.268 17 N -0.554 5.554 18 H 0.429 0.571 19 H 0.056 0.944 20 H 0.099 0.901 21 H 0.054 0.946 22 H 0.078 0.922 23 H 0.082 0.918 24 H 0.174 0.826 25 H 0.022 0.978 26 H 0.033 0.967 27 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.967 -1.097 -0.449 17.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.326 6.326 3 C 0.079 3.921 4 C -0.163 4.163 5 C -0.182 4.182 6 N -0.254 5.254 7 C -0.028 4.028 8 C 0.067 3.933 9 C -0.563 4.563 10 H 0.067 0.933 11 C -0.189 4.189 12 N -0.566 5.566 13 Si 0.791 3.209 14 H -0.200 1.200 15 H -0.200 1.200 16 H -0.193 1.193 17 N -0.160 5.160 18 H 0.269 0.731 19 H 0.075 0.925 20 H 0.118 0.882 21 H 0.073 0.927 22 H 0.096 0.904 23 H 0.100 0.900 24 H 0.192 0.808 25 H 0.040 0.960 26 H 0.051 0.949 27 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.093 -1.762 -0.490 16.197 hybrid contribution -0.097 0.910 0.516 1.051 sum -16.190 -0.852 0.027 16.213 Atomic orbital electron populations 1.22991 0.78289 1.04249 1.01319 1.87827 1.22110 1.26944 1.95693 1.20370 0.83983 0.85583 1.02180 1.21093 0.93554 0.88277 1.13413 1.22361 0.88353 0.99349 1.08111 1.70248 1.20687 1.12647 1.21839 1.23899 0.87790 0.89708 1.01441 1.17514 0.85034 0.93375 0.97402 1.21180 1.02045 1.21734 1.11351 0.93299 1.25798 0.98655 0.94921 0.99494 1.70020 1.20045 1.27761 1.38783 0.85486 0.77807 0.78409 0.79243 1.20002 1.20038 1.19343 1.42969 1.05626 1.09942 1.57450 0.73069 0.92522 0.88246 0.92697 0.90376 0.90037 0.80842 0.95982 0.94866 0.92327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.63 15 2 O -0.41 -9.72 10.03 -148.98 -1.49 -11.21 15 3 C 0.16 3.58 6.56 71.23 0.47 4.05 15 4 C -0.05 -1.63 7.21 40.95 0.30 -1.33 15 5 C -0.03 -1.39 11.22 83.52 0.94 -0.45 15 6 N -0.53 -26.53 11.20 -188.14 -2.11 -28.64 15 7 C 0.24 11.20 7.37 138.13 1.02 12.21 15 8 C 0.11 5.65 5.60 29.10 0.16 5.82 15 9 C -0.52 -30.85 9.06 25.60 0.23 -30.62 15 10 H 0.05 2.96 7.74 -2.91 -0.02 2.93 15 11 C 0.01 0.57 5.46 84.66 0.46 1.03 15 12 N -0.93 -54.89 13.29 21.45 0.28 -54.61 15 13 Si 0.97 45.29 29.54 68.60 2.03 47.32 15 14 H -0.27 -12.83 7.11 99.48 0.71 -12.12 15 15 H -0.28 -12.29 7.11 99.48 0.71 -11.58 15 16 H -0.27 -12.13 7.11 99.48 0.71 -11.42 15 17 N -0.55 -20.05 6.15 -174.60 -1.07 -21.13 15 18 H 0.43 12.12 8.96 -92.71 -0.83 11.29 15 19 H 0.06 0.63 8.14 -2.38 -0.02 0.61 15 20 H 0.10 1.17 8.14 -2.39 -0.02 1.15 15 21 H 0.05 0.63 8.14 -2.38 -0.02 0.62 15 22 H 0.08 1.48 8.14 -2.39 -0.02 1.46 15 23 H 0.08 1.48 8.14 -2.38 -0.02 1.46 15 24 H 0.17 6.40 7.87 -2.91 -0.02 6.38 15 25 H 0.02 1.28 8.14 -2.39 -0.02 1.26 15 26 H 0.03 1.73 8.14 -2.39 -0.02 1.71 15 27 H 0.27 14.88 8.31 -92.71 -0.77 14.11 15 Total: -1.00 -70.87 244.90 2.80 -68.07 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: 0.34 Total: 7.85 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: 4.82 Total: -7.66 kcal Atomic # 7 Polarization: -101.47 SS G_CDS: -2.90 Total: -104.37 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: -1.49 Total: -11.21 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -70.87 2.80 -68.07 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259832511.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.874 kcal (2) G-P(sol) polarization free energy of solvation -70.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds