Wall clock time and date at job start Mon Mar 30 2020 02:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.34356 * 125.86665 * 2 1 4 4 C 1.31020 * 109.29970 * 180.02562 * 3 2 1 5 5 O 1.35508 * 125.76253 * 179.97438 * 4 3 2 6 6 N 1.35872 * 108.47335 * 359.97438 * 4 3 2 7 7 C 1.46502 * 126.47857 * 180.02562 * 6 4 3 8 8 C 1.50699 * 109.47236 * 269.98105 * 7 6 4 9 9 H 1.07993 * 120.00375 * 0.02562 * 8 7 6 10 10 C 1.37875 * 119.99568 * 180.02562 * 8 7 6 11 11 N 1.31521 * 120.00480 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00016 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47389 * 59.99561 * 12 10 8 14 14 H 1.48497 * 109.47546 * 179.97438 * 12 10 8 15 15 H 1.48508 * 109.46900 * 299.99751 * 12 10 8 16 16 C 1.34424 * 125.86429 * 179.97438 * 2 1 3 17 17 C 1.50698 * 126.54377 * 359.73971 * 16 2 1 18 18 H 1.09000 * 109.46919 * 269.99881 * 1 2 3 19 19 H 1.08992 * 109.47252 * 30.00219 * 1 2 3 20 20 H 1.09010 * 109.46811 * 149.99897 * 1 2 3 21 21 H 0.96696 * 113.99938 * 89.96815 * 5 4 3 22 22 H 1.08994 * 109.46684 * 29.98655 * 7 6 4 23 23 H 1.09001 * 109.47035 * 149.98043 * 7 6 4 24 24 H 0.97000 * 120.00118 * 179.97438 * 11 10 8 25 25 H 1.08993 * 109.47113 * 90.02504 * 17 16 2 26 26 H 1.09003 * 109.46658 * 210.02642 * 17 16 2 27 27 H 1.08999 * 109.46966 * 330.02029 * 17 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2942 1.0888 0.0000 4 6 3.5500 0.7152 -0.0006 5 8 4.6226 1.5433 -0.0012 6 7 3.5952 -0.6428 -0.0003 7 6 4.8015 -1.4741 -0.0003 8 6 5.2148 -1.7597 -1.4210 9 1 4.6371 -1.3616 -2.2420 10 6 6.3307 -2.5295 -1.6728 11 7 7.0346 -3.0140 -0.6731 12 14 6.8435 -2.8831 -3.4338 13 1 7.1246 -1.6039 -4.1339 14 1 8.0662 -3.7258 -3.4337 15 1 5.7476 -3.6001 -4.1341 16 6 2.2946 -1.0894 0.0005 17 6 1.8391 -2.5259 0.0066 18 1 -0.3633 0.0000 1.0277 19 1 -0.3633 0.8899 -0.5138 20 1 -0.3633 -0.8901 -0.5139 21 1 4.9340 1.7842 0.8820 22 1 5.6057 -0.9472 0.5132 23 1 4.5958 -2.4128 0.5140 24 1 7.8194 -3.5559 -0.8502 25 1 1.7259 -2.8755 -1.0195 26 1 2.5794 -3.1395 0.5201 27 1 0.8827 -2.6015 0.5239 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259855120.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:08 Heat of formation + Delta-G solvation = 4.422876 kcal Electronic energy + Delta-G solvation = -12355.172575 eV Core-core repulsion = 10114.067443 eV Total energy + Delta-G solvation = -2241.105132 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.27381 -36.63857 -34.19860 -32.27524 -31.53620 -28.66161 -26.92736 -24.34821 -23.11767 -20.09073 -19.16389 -17.56889 -16.84877 -15.46006 -14.97777 -14.33271 -13.73502 -13.35349 -12.74368 -12.64852 -12.37307 -11.99162 -11.96784 -11.59007 -11.56824 -11.09863 -10.92528 -10.82863 -10.30226 -9.94354 -9.21982 -8.68247 -8.53316 -7.32430 -6.31956 -4.39094 2.70413 3.20851 3.24467 3.28487 3.41717 3.64796 4.25924 4.65076 5.03209 5.48273 5.64413 5.71674 5.84834 6.03345 6.11555 6.24814 6.37993 6.44448 6.64719 6.90177 7.15353 7.47213 7.55387 7.66703 7.82119 8.41466 8.67991 8.74601 9.28194 10.76549 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.042110 B = 0.011128 C = 0.010077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.760713 B = 2515.626760 C = 2777.904588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C -0.018 4.018 3 N -0.502 5.502 4 C 0.363 3.637 5 O -0.439 6.439 6 N -0.427 5.427 7 C 0.233 3.767 8 C -0.537 4.537 9 H 0.063 0.937 10 C 0.067 3.933 11 N -0.892 5.892 12 Si 0.907 3.093 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.274 1.274 16 C -0.008 4.008 17 C -0.069 4.069 18 H 0.059 0.941 19 H 0.063 0.937 20 H 0.063 0.937 21 H 0.388 0.612 22 H 0.047 0.953 23 H 0.049 0.951 24 H 0.269 0.731 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.388 1.195 2.864 8.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.148 4.148 3 N -0.233 5.233 4 C 0.063 3.937 5 O -0.238 6.238 6 N -0.118 5.118 7 C 0.114 3.886 8 C -0.575 4.575 9 H 0.082 0.918 10 C -0.137 4.137 11 N -0.530 5.530 12 Si 0.734 3.266 13 H -0.199 1.199 14 H -0.209 1.209 15 H -0.199 1.199 16 C -0.126 4.126 17 C -0.127 4.127 18 H 0.078 0.922 19 H 0.082 0.918 20 H 0.082 0.918 21 H 0.242 0.758 22 H 0.065 0.935 23 H 0.067 0.933 24 H 0.078 0.922 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.252 1.837 2.301 7.827 hybrid contribution 1.116 -0.915 -0.436 1.508 sum -6.136 0.922 1.865 6.479 Atomic orbital electron populations 1.19899 0.88262 1.01940 1.01288 1.20117 0.95725 0.87785 1.11171 1.70173 0.99042 1.30573 1.23496 1.20004 0.86513 0.79369 1.07779 1.84922 1.43311 1.62748 1.32785 1.46491 1.08191 1.06882 1.50204 1.19723 0.79423 0.90174 0.99266 1.21213 1.11906 1.33253 0.91126 0.91829 1.24929 0.95575 0.94943 0.98238 1.69908 1.17704 1.34221 1.31162 0.86398 0.78032 0.78570 0.83641 1.19858 1.20886 1.19889 1.20818 0.83411 0.96998 1.11358 1.20122 1.00643 0.89424 1.02542 0.92203 0.91821 0.91779 0.75812 0.93470 0.93271 0.92172 0.91155 0.91455 0.91014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.82 10.03 36.01 0.36 -0.46 15 2 C -0.02 -0.36 7.08 -82.83 -0.59 -0.94 15 3 N -0.50 -11.16 11.28 -10.93 -0.12 -11.28 15 4 C 0.36 8.26 9.07 -89.18 -0.81 7.45 15 5 O -0.44 -9.03 13.57 -18.22 -0.25 -9.27 15 6 N -0.43 -9.88 2.77 -115.23 -0.32 -10.20 15 7 C 0.23 5.87 5.71 -5.19 -0.03 5.84 15 8 C -0.54 -14.85 9.39 -34.44 -0.32 -15.17 15 9 H 0.06 1.83 7.81 -52.49 -0.41 1.42 15 10 C 0.07 1.82 5.46 -17.82 -0.10 1.72 15 11 N -0.89 -24.97 13.29 55.43 0.74 -24.24 15 12 Si 0.91 21.19 29.54 -169.99 -5.02 16.17 15 13 H -0.27 -6.42 7.11 56.52 0.40 -6.02 15 14 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 15 H -0.27 -6.30 7.11 56.52 0.40 -5.89 15 16 C -0.01 -0.17 6.96 -81.39 -0.57 -0.73 15 17 C -0.07 -1.15 9.78 36.00 0.35 -0.80 15 18 H 0.06 0.77 8.14 -51.93 -0.42 0.35 15 19 H 0.06 0.91 8.14 -51.93 -0.42 0.48 15 20 H 0.06 0.81 7.78 -51.92 -0.40 0.40 15 21 H 0.39 5.66 9.06 45.56 0.41 6.07 15 22 H 0.05 1.22 8.14 -51.93 -0.42 0.80 15 23 H 0.05 1.25 7.21 -51.93 -0.37 0.87 15 24 H 0.27 7.11 8.31 -40.82 -0.34 6.77 15 25 H 0.07 1.15 8.14 -51.93 -0.42 0.72 15 26 H 0.07 1.15 7.24 -51.93 -0.38 0.78 15 27 H 0.07 0.94 7.79 -51.93 -0.40 0.53 15 LS Contribution 243.00 15.07 3.66 3.66 Total: -1.00 -31.62 243.00 -5.39 -37.02 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -2.38 Total: 1.24 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -1.70 Total: -3.10 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: 0.29 Total: -45.72 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: -0.25 Total: -9.27 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -31.62 -5.39 -37.02 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259855120.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.439 kcal (2) G-P(sol) polarization free energy of solvation -31.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds