Wall clock time and date at job start Mon Mar 30 2020 02:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.34356 * 125.86665 * 2 1 4 4 C 1.31020 * 109.29970 * 180.02562 * 3 2 1 5 5 O 1.35508 * 125.76253 * 179.97438 * 4 3 2 6 6 N 1.35872 * 108.47335 * 359.97438 * 4 3 2 7 7 C 1.46502 * 126.47857 * 180.02562 * 6 4 3 8 8 C 1.50699 * 109.47236 * 269.98105 * 7 6 4 9 9 H 1.07993 * 120.00375 * 0.02562 * 8 7 6 10 10 C 1.37875 * 119.99568 * 180.02562 * 8 7 6 11 11 N 1.31521 * 120.00480 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00016 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47389 * 59.99561 * 12 10 8 14 14 H 1.48497 * 109.47546 * 179.97438 * 12 10 8 15 15 H 1.48508 * 109.46900 * 299.99751 * 12 10 8 16 16 C 1.34424 * 125.86429 * 179.97438 * 2 1 3 17 17 C 1.50698 * 126.54377 * 359.73971 * 16 2 1 18 18 H 1.09000 * 109.46919 * 269.99881 * 1 2 3 19 19 H 1.08992 * 109.47252 * 30.00219 * 1 2 3 20 20 H 1.09010 * 109.46811 * 149.99897 * 1 2 3 21 21 H 0.96696 * 113.99938 * 89.96815 * 5 4 3 22 22 H 1.08994 * 109.46684 * 29.98655 * 7 6 4 23 23 H 1.09001 * 109.47035 * 149.98043 * 7 6 4 24 24 H 0.97000 * 120.00118 * 179.97438 * 11 10 8 25 25 H 1.08993 * 109.47113 * 90.02504 * 17 16 2 26 26 H 1.09003 * 109.46658 * 210.02642 * 17 16 2 27 27 H 1.08999 * 109.46966 * 330.02029 * 17 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2942 1.0888 0.0000 4 6 3.5500 0.7152 -0.0006 5 8 4.6226 1.5433 -0.0012 6 7 3.5952 -0.6428 -0.0003 7 6 4.8015 -1.4741 -0.0003 8 6 5.2148 -1.7597 -1.4210 9 1 4.6371 -1.3616 -2.2420 10 6 6.3307 -2.5295 -1.6728 11 7 7.0346 -3.0140 -0.6731 12 14 6.8435 -2.8831 -3.4338 13 1 7.1246 -1.6039 -4.1339 14 1 8.0662 -3.7258 -3.4337 15 1 5.7476 -3.6001 -4.1341 16 6 2.2946 -1.0894 0.0005 17 6 1.8391 -2.5259 0.0066 18 1 -0.3633 0.0000 1.0277 19 1 -0.3633 0.8899 -0.5138 20 1 -0.3633 -0.8901 -0.5139 21 1 4.9340 1.7842 0.8820 22 1 5.6057 -0.9472 0.5132 23 1 4.5958 -2.4128 0.5140 24 1 7.8194 -3.5559 -0.8502 25 1 1.7259 -2.8755 -1.0195 26 1 2.5794 -3.1395 0.5201 27 1 0.8827 -2.6015 0.5239 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259855120.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:08 Heat of formation + Delta-G solvation = -19.315591 kcal Electronic energy + Delta-G solvation = -12356.201952 eV Core-core repulsion = 10114.067443 eV Total energy + Delta-G solvation = -2242.134510 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.91127 -38.24134 -36.10095 -34.18383 -32.98041 -30.21072 -28.68362 -25.93018 -25.01593 -21.74341 -20.76022 -19.24539 -18.91550 -17.28318 -16.66331 -16.17580 -15.26969 -14.90438 -14.51698 -14.04439 -13.75640 -13.64247 -13.48494 -13.15655 -12.99044 -12.82993 -12.71923 -12.47647 -12.19467 -11.88220 -10.91700 -10.73783 -10.32071 -8.88683 -8.40027 -6.55959 1.06631 1.35442 1.37083 1.45886 1.80609 2.02150 2.31265 2.92141 3.07857 3.95748 4.22501 4.32225 4.46884 4.73319 4.81899 4.87450 4.99581 5.10156 5.16993 5.17227 5.47875 5.66664 5.75379 5.82798 6.05193 6.49270 6.86351 7.09965 7.16534 8.67830 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.042110 B = 0.011128 C = 0.010077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.760713 B = 2515.626760 C = 2777.904588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C -0.021 4.021 3 N -0.518 5.518 4 C 0.342 3.658 5 O -0.452 6.452 6 N -0.442 5.442 7 C 0.250 3.750 8 C -0.557 4.557 9 H 0.046 0.954 10 C 0.025 3.975 11 N -0.916 5.916 12 Si 0.968 3.032 13 H -0.276 1.276 14 H -0.271 1.271 15 H -0.266 1.266 16 C -0.027 4.027 17 C -0.066 4.066 18 H 0.082 0.918 19 H 0.066 0.934 20 H 0.089 0.911 21 H 0.410 0.590 22 H 0.031 0.969 23 H 0.043 0.957 24 H 0.274 0.726 25 H 0.072 0.928 26 H 0.055 0.945 27 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.485 0.639 2.394 8.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.151 4.151 3 N -0.249 5.249 4 C 0.043 3.957 5 O -0.254 6.254 6 N -0.134 5.134 7 C 0.130 3.870 8 C -0.595 4.595 9 H 0.064 0.936 10 C -0.176 4.176 11 N -0.554 5.554 12 Si 0.792 3.208 13 H -0.201 1.201 14 H -0.195 1.195 15 H -0.191 1.191 16 C -0.143 4.143 17 C -0.123 4.123 18 H 0.100 0.900 19 H 0.085 0.915 20 H 0.107 0.893 21 H 0.267 0.733 22 H 0.049 0.951 23 H 0.061 0.939 24 H 0.083 0.917 25 H 0.091 0.909 26 H 0.074 0.926 27 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.367 1.289 1.856 8.667 hybrid contribution 1.428 -0.692 -0.239 1.605 sum -6.939 0.597 1.617 7.150 Atomic orbital electron populations 1.20079 0.84491 1.03360 1.03186 1.20988 0.97945 0.86740 1.09422 1.70224 0.99059 1.31668 1.23970 1.20333 0.87202 0.79569 1.08617 1.84839 1.43046 1.62457 1.35025 1.46483 1.08565 1.06962 1.51422 1.19302 0.80040 0.89867 0.97838 1.21343 1.12465 1.33959 0.91719 0.93617 1.25702 0.95278 0.94415 1.02212 1.69979 1.18013 1.34387 1.33003 0.85448 0.78205 0.78361 0.78776 1.20120 1.19507 1.19070 1.21596 0.82441 0.99109 1.11129 1.20251 1.02187 0.86792 1.03094 0.89951 0.91516 0.89268 0.73251 0.95108 0.93935 0.91661 0.90943 0.92558 0.86936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.39 10.03 71.24 0.71 -0.68 15 2 C -0.02 -0.82 7.08 41.30 0.29 -0.52 15 3 N -0.52 -22.71 11.28 -302.08 -3.41 -26.12 15 4 C 0.34 15.66 9.07 179.84 1.63 17.29 15 5 O -0.45 -18.83 13.57 -88.10 -1.20 -20.02 15 6 N -0.44 -20.62 2.77 -629.52 -1.75 -22.37 15 7 C 0.25 12.83 5.71 85.63 0.49 13.32 15 8 C -0.56 -31.18 9.39 25.60 0.24 -30.94 15 9 H 0.05 2.67 7.81 -2.91 -0.02 2.65 15 10 C 0.03 1.38 5.46 84.65 0.46 1.84 15 11 N -0.92 -51.21 13.29 21.45 0.28 -50.92 15 12 Si 0.97 43.00 29.54 68.60 2.03 45.03 15 13 H -0.28 -12.30 7.11 99.48 0.71 -11.59 15 14 H -0.27 -11.37 7.11 99.48 0.71 -10.66 15 15 H -0.27 -11.42 7.11 99.48 0.71 -10.71 15 16 C -0.03 -1.07 6.96 40.79 0.28 -0.79 15 17 C -0.07 -2.06 9.78 71.24 0.70 -1.36 15 18 H 0.08 1.80 8.14 -2.39 -0.02 1.78 15 19 H 0.07 1.71 8.14 -2.39 -0.02 1.69 15 20 H 0.09 1.88 7.78 -2.38 -0.02 1.86 15 21 H 0.41 12.14 9.06 -74.06 -0.67 11.47 15 22 H 0.03 1.65 8.14 -2.39 -0.02 1.63 15 23 H 0.04 2.21 7.21 -2.39 -0.02 2.19 15 24 H 0.27 14.35 8.31 -92.71 -0.77 13.58 15 25 H 0.07 2.23 8.14 -2.39 -0.02 2.21 15 26 H 0.06 1.88 7.24 -2.39 -0.02 1.86 15 27 H 0.11 2.54 7.79 -2.39 -0.02 2.52 15 Total: -1.00 -67.05 243.00 1.28 -65.77 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: 0.51 Total: 10.47 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: 4.81 Total: -1.84 kcal Atomic # 7 Polarization: -94.55 SS G_CDS: -4.87 Total: -99.41 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -1.20 Total: -20.02 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -67.05 1.28 -65.77 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259855120.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.458 kcal (2) G-P(sol) polarization free energy of solvation -67.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds