Wall clock time and date at job start Mon Mar 30 2020 02:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.38694 * 126.04703 * 2 1 4 4 H 0.97006 * 125.98414 * 0.02562 * 3 2 1 5 5 C 1.34756 * 108.03715 * 180.02562 * 3 2 1 6 6 O 1.21791 * 125.95254 * 179.97438 * 5 3 2 7 7 N 1.34766 * 108.10359 * 0.02562 * 5 3 2 8 8 H 0.97001 * 125.98192 * 179.97438 * 7 5 3 9 9 C 1.32867 * 126.04223 * 180.29016 * 2 1 3 10 10 C 1.50698 * 126.03873 * 359.97438 * 9 2 1 11 11 C 1.53007 * 109.47209 * 95.20126 * 10 9 2 12 12 C 1.50701 * 109.47239 * 179.97438 * 11 10 9 13 13 H 1.08006 * 119.99777 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00034 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99991 * 180.02562 * 14 12 11 16 16 Si 1.86796 * 119.99998 * 0.02562 * 14 12 11 17 17 H 1.48508 * 109.47085 * 90.00029 * 16 14 12 18 18 H 1.48496 * 109.47431 * 209.99844 * 16 14 12 19 19 H 1.48505 * 109.47227 * 330.00092 * 16 14 12 20 20 H 1.09010 * 109.46830 * 359.96569 * 1 2 3 21 21 H 1.08992 * 109.47479 * 119.96982 * 1 2 3 22 22 H 1.09005 * 109.46913 * 239.97695 * 1 2 3 23 23 H 1.09000 * 109.47046 * 215.19989 * 10 9 2 24 24 H 1.09000 * 109.47654 * 335.19752 * 10 9 2 25 25 H 1.08995 * 109.46581 * 299.99749 * 11 10 9 26 26 H 1.09003 * 109.46640 * 59.99879 * 11 10 9 27 27 H 0.97004 * 120.00019 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3231 1.1214 0.0000 4 1 2.0239 2.0441 0.0004 5 6 3.6046 0.7047 -0.0006 6 8 4.5895 1.4213 -0.0012 7 7 3.6069 -0.6429 -0.0015 8 1 4.3927 -1.2115 -0.0024 9 6 2.2887 -1.0743 -0.0054 10 6 1.8251 -2.5082 -0.0122 11 6 1.7921 -3.0268 -1.4513 12 6 1.3290 -4.4609 -1.4579 13 1 1.0825 -4.9531 -0.5287 14 6 1.2191 -5.1443 -2.6503 15 7 0.8145 -6.3956 -2.6562 16 14 1.6448 -4.2928 -4.2575 17 1 3.0844 -4.4968 -4.5595 18 1 0.8231 -4.8654 -5.3539 19 1 1.3654 -2.8393 -4.1368 20 1 -0.3633 1.0278 0.0006 21 1 -0.3634 -0.5133 -0.8902 22 1 -0.3633 -0.5142 0.8898 23 1 2.5125 -3.1151 0.5771 24 1 0.8258 -2.5690 0.4190 25 1 1.1046 -2.4199 -2.0404 26 1 2.7914 -2.9660 -1.8823 27 1 0.7368 -6.8763 -3.4951 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259879282.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:16 Heat of formation + Delta-G solvation = -37.180484 kcal Electronic energy + Delta-G solvation = -12085.294730 eV Core-core repulsion = 9842.385540 eV Total energy + Delta-G solvation = -2242.909189 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.23696 -38.24700 -35.91416 -34.70343 -33.68674 -31.39408 -28.31882 -25.86569 -23.47362 -22.79823 -20.88857 -19.11463 -18.48576 -17.27541 -17.13546 -16.34376 -16.26910 -14.93757 -14.80788 -14.55237 -14.18586 -13.95916 -13.42392 -12.91896 -12.90046 -12.53025 -11.95344 -11.90339 -11.65571 -11.56721 -11.42955 -11.27971 -10.72819 -8.57754 -8.25414 -6.28395 1.26912 1.37676 1.40249 1.50397 1.74578 1.83759 2.38174 2.69680 3.11053 4.00613 4.23851 4.37789 4.56398 4.73852 4.88268 4.95381 5.04471 5.11298 5.30220 5.48851 5.56728 5.66121 5.73012 6.17491 6.31820 6.41392 6.80786 7.34210 7.36607 8.90853 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.046678 B = 0.009158 C = 0.008690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.705214 B = 3056.614868 C = 3221.145695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.016 3.984 3 N -0.619 5.619 4 H 0.441 0.559 5 C 0.639 3.361 6 O -0.628 6.628 7 N -0.628 5.628 8 H 0.435 0.565 9 C 0.016 3.984 10 C -0.025 4.025 11 C -0.004 4.004 12 C -0.525 4.525 13 H 0.044 0.956 14 C 0.009 3.991 15 N -0.950 5.950 16 Si 0.940 3.060 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.247 1.247 20 H 0.091 0.909 21 H 0.079 0.921 22 H 0.093 0.907 23 H 0.068 0.932 24 H 0.096 0.904 25 H 0.025 0.975 26 H 0.008 0.992 27 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.611 13.149 4.325 13.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.090 4.090 3 N -0.263 5.263 4 H 0.284 0.716 5 C 0.338 3.662 6 O -0.511 6.511 7 N -0.270 5.270 8 H 0.276 0.724 9 C -0.090 4.090 10 C -0.064 4.064 11 C -0.042 4.042 12 C -0.563 4.563 13 H 0.062 0.938 14 C -0.188 4.188 15 N -0.591 5.591 16 Si 0.765 3.235 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.171 1.171 20 H 0.110 0.890 21 H 0.097 0.903 22 H 0.111 0.889 23 H 0.087 0.913 24 H 0.114 0.886 25 H 0.043 0.957 26 H 0.027 0.973 27 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.051 13.465 4.222 14.150 hybrid contribution 0.622 -0.148 -0.833 1.051 sum -0.429 13.316 3.389 13.748 Atomic orbital electron populations 1.20414 0.84256 1.04615 1.04298 1.20395 0.95489 0.83459 1.09609 1.43108 1.05114 1.09995 1.68097 0.71628 1.16308 0.84082 0.82667 0.83102 1.91024 1.36605 1.59525 1.63969 1.43272 1.09154 1.06803 1.67790 0.72393 1.20381 0.82081 0.96906 1.09607 1.19953 1.02053 0.86427 0.97929 1.19480 0.96136 0.94138 0.94419 1.21468 1.43916 0.97156 0.93727 0.93819 1.25868 0.94760 0.95211 1.02928 1.70050 1.49417 1.11595 1.28006 0.85805 0.78338 0.80230 0.79126 1.20030 1.21186 1.17054 0.88969 0.90275 0.88873 0.91322 0.88582 0.95669 0.97324 0.92617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.38 9.76 71.24 0.70 -0.68 15 2 C 0.02 0.39 7.18 40.30 0.29 0.68 15 3 N -0.62 -15.38 6.15 -311.98 -1.92 -17.30 15 4 H 0.44 8.10 8.96 -92.70 -0.83 7.27 15 5 C 0.64 20.70 9.33 179.06 1.67 22.37 15 6 O -0.63 -24.79 18.06 -4.64 -0.08 -24.88 15 7 N -0.63 -18.89 6.15 -311.97 -1.92 -20.81 15 8 H 0.43 11.84 8.96 -92.71 -0.83 11.01 15 9 C 0.02 0.46 6.43 40.30 0.26 0.72 15 10 C -0.03 -0.83 5.51 29.85 0.16 -0.67 15 11 C 0.00 -0.17 4.02 29.85 0.12 -0.05 15 12 C -0.52 -28.03 9.66 25.60 0.25 -27.78 15 13 H 0.04 2.53 7.99 -2.91 -0.02 2.51 15 14 C 0.01 0.52 5.47 84.65 0.46 0.98 15 15 N -0.95 -57.55 13.96 21.44 0.30 -57.25 15 16 Si 0.94 42.98 27.47 68.60 1.88 44.87 15 17 H -0.27 -12.36 7.11 99.48 0.71 -11.65 15 18 H -0.29 -12.92 7.11 99.48 0.71 -12.21 15 19 H -0.25 -10.46 6.54 99.48 0.65 -9.81 15 20 H 0.09 1.12 8.14 -2.38 -0.02 1.10 15 21 H 0.08 1.55 8.14 -2.39 -0.02 1.53 15 22 H 0.09 1.44 8.14 -2.38 -0.02 1.43 15 23 H 0.07 2.27 8.14 -2.39 -0.02 2.25 15 24 H 0.10 2.93 7.69 -2.39 -0.02 2.91 15 25 H 0.02 1.05 7.20 -2.39 -0.02 1.03 15 26 H 0.01 0.36 7.57 -2.39 -0.02 0.34 15 27 H 0.26 15.08 8.31 -92.70 -0.77 14.31 15 Total: -1.00 -69.44 239.18 1.65 -67.79 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -0.52 Total: 12.02 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: 3.91 Total: -4.44 kcal Atomic # 7 Polarization: -91.82 SS G_CDS: -3.54 Total: -95.36 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -0.08 Total: -24.88 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 1.88 Total: 44.87 kcal Total: -69.44 1.65 -67.79 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259879282.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.611 kcal (2) G-P(sol) polarization free energy of solvation -69.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds