Wall clock time and date at job start Mon Mar 30 2020 02:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46902 * 111.00372 * 2 1 4 4 C 1.46904 * 110.99910 * 123.95183 * 2 1 3 5 5 C 1.50704 * 109.46973 * 66.04222 * 4 2 1 6 6 C 1.35937 * 126.31723 * 89.71289 * 5 4 2 7 7 N 1.33062 * 107.98155 * 179.88947 * 6 5 4 8 8 C 1.32817 * 108.64569 * 0.38175 * 7 6 5 9 9 C 1.39799 * 125.79786 * 179.74570 * 8 7 6 10 10 H 1.07998 * 120.00321 * 174.26900 * 9 8 7 11 11 C 1.40344 * 119.99994 * 354.26451 * 9 8 7 12 12 N 1.30632 * 119.99763 * 6.05639 * 11 9 8 13 13 Si 1.86800 * 120.00147 * 186.06297 * 11 9 8 14 14 H 1.48492 * 109.47387 * 94.97988 * 13 11 9 15 15 H 1.48498 * 109.46939 * 214.98367 * 13 11 9 16 16 H 1.48501 * 109.46769 * 334.97926 * 13 11 9 17 17 O 1.34591 * 126.32466 * 270.02833 * 5 4 2 18 18 H 1.09009 * 109.46621 * 60.00302 * 1 2 3 19 19 H 1.08999 * 109.47340 * 300.00559 * 1 2 3 20 20 H 1.08998 * 109.47231 * 180.02562 * 1 2 3 21 21 H 1.08993 * 109.47148 * 63.95142 * 3 2 1 22 22 H 1.09001 * 109.47142 * 183.95096 * 3 2 1 23 23 H 1.09001 * 109.47062 * 303.95192 * 3 2 1 24 24 H 1.08996 * 109.47270 * 186.04604 * 4 2 1 25 25 H 1.08997 * 109.47275 * 306.04633 * 4 2 1 26 26 H 1.08004 * 126.00777 * 0.04677 * 6 5 4 27 27 H 0.97000 * 119.99490 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 1.6368 -2.2204 0.9730 6 6 2.3771 -3.1649 0.3343 7 7 1.7215 -4.3204 0.4089 8 6 0.5866 -4.1228 1.0699 9 6 -0.3772 -5.0963 1.3491 10 1 -1.2239 -4.8542 1.9743 11 6 -0.2444 -6.3881 0.8170 12 7 0.8361 -6.7160 0.1601 13 14 -1.6128 -7.6386 1.0478 14 1 -2.5028 -7.6236 -0.1408 15 1 -1.0242 -8.9924 1.2086 16 1 -2.3992 -7.2937 2.2594 17 8 0.5217 -2.8228 1.4259 18 1 -0.3633 0.5138 -0.8901 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 -1.0276 0.0005 21 1 1.7045 1.8723 0.9232 22 1 3.0828 1.3431 -0.0708 23 1 1.5899 1.9163 -0.8525 24 1 3.0796 -0.6611 1.1757 25 1 1.5611 -0.3872 2.0628 26 1 3.3310 -3.0059 -0.1466 27 1 0.9276 -7.6088 -0.2080 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259893508.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:28 Heat of formation + Delta-G solvation = 18.530964 kcal Electronic energy + Delta-G solvation = -12216.076519 eV Core-core repulsion = 9975.583159 eV Total energy + Delta-G solvation = -2240.493360 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.92548 -36.81654 -33.78950 -32.34497 -29.92570 -27.48565 -27.21384 -24.21226 -21.64112 -20.79586 -19.45839 -17.33335 -15.56954 -15.33379 -14.92902 -14.78037 -13.96137 -13.94967 -12.92047 -12.52854 -12.20473 -11.83819 -11.59815 -11.32860 -11.31085 -11.22342 -10.96143 -10.57495 -10.32022 -9.61288 -9.09759 -8.16666 -7.92384 -7.26791 -6.64492 -4.56387 2.90248 3.07491 3.12391 3.28519 3.88247 4.30634 4.61125 4.83268 5.39847 5.42892 5.54136 5.63855 5.80434 5.93354 5.98043 6.05727 6.28016 6.44463 6.63187 6.93854 7.15152 7.34886 7.43507 7.80660 8.04423 8.21599 8.59049 8.83565 10.05330 10.29689 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.075606 B = 0.008700 C = 0.008181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 370.254348 B = 3217.659382 C = 3421.543678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.547 5.547 3 C 0.026 3.974 4 C 0.171 3.829 5 C -0.205 4.205 6 C 0.018 3.982 7 N -0.540 5.540 8 C 0.333 3.667 9 C -0.438 4.438 10 H 0.090 0.910 11 C 0.077 3.923 12 N -0.727 5.727 13 Si 0.926 3.074 14 H -0.268 1.268 15 H -0.274 1.274 16 H -0.260 1.260 17 O -0.247 6.247 18 H 0.059 0.941 19 H 0.018 0.982 20 H 0.077 0.923 21 H 0.019 0.981 22 H 0.065 0.935 23 H 0.063 0.937 24 H 0.084 0.916 25 H 0.030 0.970 26 H 0.144 0.856 27 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.538 7.402 0.506 7.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.271 5.271 3 C -0.123 4.123 4 C 0.044 3.956 5 C -0.260 4.260 6 C -0.129 4.129 7 N -0.271 5.271 8 C 0.149 3.851 9 C -0.473 4.473 10 H 0.108 0.892 11 C -0.149 4.149 12 N -0.351 5.351 13 Si 0.749 3.251 14 H -0.193 1.193 15 H -0.199 1.199 16 H -0.184 1.184 17 O -0.144 6.144 18 H 0.078 0.922 19 H 0.037 0.963 20 H 0.096 0.904 21 H 0.038 0.962 22 H 0.084 0.916 23 H 0.082 0.918 24 H 0.102 0.898 25 H 0.048 0.952 26 H 0.161 0.839 27 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.096 6.430 -0.256 6.436 hybrid contribution -0.942 0.582 0.971 1.473 sum -1.038 7.013 0.715 7.125 Atomic orbital electron populations 1.22319 0.87308 1.03049 0.99188 1.62135 1.08355 1.12388 1.44222 1.22346 1.00560 0.89480 0.99899 1.19899 0.98638 0.86696 0.90350 1.22084 0.92495 0.94893 1.16514 1.22909 1.00032 0.90299 0.99617 1.71469 1.06415 1.23205 1.25979 1.22286 0.93148 0.79022 0.90642 1.18124 1.06418 0.92495 1.30296 0.89167 1.25851 0.96658 0.98616 0.93749 1.70013 1.23763 1.19642 1.21679 0.86023 0.80413 0.78854 0.79794 1.19316 1.19949 1.18410 1.84362 1.39460 1.24042 1.66523 0.92232 0.96314 0.90408 0.96213 0.91601 0.91801 0.89807 0.95185 0.83892 0.91087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 9.43 60.06 0.57 1.08 15 2 N -0.55 -9.66 5.01 -252.72 -1.27 -10.93 15 3 C 0.03 0.34 9.57 60.07 0.57 0.91 15 4 C 0.17 3.25 5.52 -4.97 -0.03 3.22 15 5 C -0.21 -5.00 5.98 -35.13 -0.21 -5.21 15 6 C 0.02 0.48 11.81 -17.84 -0.21 0.27 15 7 N -0.54 -16.08 9.45 -13.43 -0.13 -16.21 15 8 C 0.33 9.81 7.73 -16.54 -0.13 9.68 15 9 C -0.44 -12.28 9.45 -38.21 -0.36 -12.64 15 10 H 0.09 2.35 7.86 -52.49 -0.41 1.94 15 11 C 0.08 2.00 5.49 -17.27 -0.09 1.91 15 12 N -0.73 -20.10 11.91 55.57 0.66 -19.44 15 13 Si 0.93 18.88 29.57 -169.99 -5.03 13.85 15 14 H -0.27 -5.37 7.11 56.52 0.40 -4.96 15 15 H -0.27 -5.42 7.11 56.52 0.40 -5.02 15 16 H -0.26 -5.16 7.11 56.52 0.40 -4.76 15 17 O -0.25 -6.78 10.12 3.13 0.03 -6.75 15 18 H 0.06 0.90 8.14 -51.92 -0.42 0.47 15 19 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 15 20 H 0.08 1.62 6.62 -51.93 -0.34 1.28 15 21 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 15 22 H 0.07 0.79 8.12 -51.93 -0.42 0.37 15 23 H 0.06 0.76 8.14 -51.93 -0.42 0.33 15 24 H 0.08 1.40 8.06 -51.93 -0.42 0.98 15 25 H 0.03 0.55 8.12 -51.93 -0.42 0.13 15 26 H 0.14 3.26 8.06 -52.48 -0.42 2.83 15 27 H 0.28 6.87 8.29 -40.82 -0.34 6.54 15 LS Contribution 240.05 15.07 3.62 3.62 Total: -1.00 -31.54 240.05 -5.27 -36.81 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: -3.27 Total: -0.18 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: 0.11 Total: -0.78 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: -0.73 Total: -46.58 kcal Atomic # 8 Polarization: -6.78 SS G_CDS: 0.03 Total: -6.75 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -31.54 -5.27 -36.81 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259893508.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.341 kcal (2) G-P(sol) polarization free energy of solvation -31.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds