Wall clock time and date at job start Mon Mar 30 2020 02:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.34761 * 126.44449 * 2 1 4 4 C 1.33963 * 107.75329 * 180.26804 * 3 2 1 5 5 N 1.30257 * 108.76262 * 359.73570 * 4 3 2 6 6 C 1.34329 * 126.44595 * 179.81807 * 2 1 3 7 7 C 1.50701 * 126.16420 * 359.97438 * 6 2 1 8 8 H 1.09007 * 109.46882 * 359.71856 * 7 6 2 9 9 C 1.50694 * 109.47186 * 239.71456 * 7 6 2 10 10 H 1.07999 * 120.00175 * 272.51748 * 9 7 6 11 11 C 1.37885 * 119.99973 * 92.51525 * 9 7 6 12 12 N 1.31513 * 119.99884 * 353.12634 * 11 9 7 13 13 Si 1.86793 * 120.00063 * 173.12660 * 11 9 7 14 14 H 1.48503 * 109.47007 * 59.99994 * 13 11 9 15 15 H 1.48500 * 109.47325 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47540 * 300.00309 * 13 11 9 17 17 C 1.52994 * 109.47086 * 119.71227 * 7 6 2 18 18 N 1.46902 * 109.47351 * 185.51109 * 17 7 6 19 19 H 1.09004 * 109.47268 * 270.18155 * 1 2 3 20 20 H 1.09001 * 109.47272 * 30.17919 * 1 2 3 21 21 H 1.08998 * 109.47481 * 150.18211 * 1 2 3 22 22 H 1.08005 * 125.61598 * 179.70744 * 4 3 2 23 23 H 0.97001 * 119.99960 * 180.02562 * 12 11 9 24 24 H 1.08997 * 109.47538 * 305.51140 * 17 7 6 25 25 H 1.09002 * 109.47138 * 65.51129 * 17 7 6 26 26 H 1.00894 * 111.00446 * 179.20913 * 18 17 7 27 27 H 1.00903 * 110.99719 * 303.15911 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3075 1.0841 0.0000 4 6 3.5764 0.6548 -0.0060 5 7 3.5781 -0.6478 -0.0039 6 6 2.3049 -1.0806 0.0034 7 6 1.8545 -2.5187 0.0085 8 1 0.7652 -2.5582 0.0141 9 6 2.3886 -3.2080 1.2376 10 1 3.3680 -3.6628 1.2191 11 6 1.6269 -3.2579 2.3859 12 7 0.4956 -2.5908 2.4540 13 14 2.2019 -4.2731 3.8446 14 1 3.5193 -3.7696 4.3096 15 1 1.2127 -4.1609 4.9465 16 1 2.3312 -5.6954 3.4378 17 6 2.3839 -3.2233 -1.2420 18 7 1.8375 -4.5855 -1.3050 19 1 -0.3634 0.0033 1.0277 20 1 -0.3634 0.8884 -0.5166 21 1 -0.3634 -0.8916 -0.5110 22 1 4.4536 1.2849 -0.0120 23 1 -0.0401 -2.6256 3.2619 24 1 2.0785 -2.6680 -2.1288 25 1 3.4721 -3.2700 -1.1996 26 1 2.1623 -5.0677 -2.1295 27 1 2.0636 -5.1047 -0.4699 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259934932.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:16 Heat of formation + Delta-G solvation = 10.400548 kcal Electronic energy + Delta-G solvation = -12567.711063 eV Core-core repulsion = 10326.865142 eV Total energy + Delta-G solvation = -2240.845921 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.25356 -35.59669 -33.28164 -32.23848 -31.47319 -28.40243 -25.58793 -24.25299 -21.87922 -20.54041 -19.28492 -16.67988 -15.96087 -15.65090 -14.81910 -14.37151 -14.08748 -13.44045 -12.85699 -12.58853 -12.16525 -11.80070 -11.58027 -11.15209 -11.02174 -10.69715 -10.62163 -10.22548 -9.58537 -9.28393 -9.04274 -8.49241 -7.71401 -7.43089 -6.04448 -4.05577 2.48616 3.32096 3.36539 3.39639 3.72596 3.88426 4.44125 5.07998 5.30034 5.66969 5.85766 6.12542 6.22367 6.28836 6.45967 6.59614 6.68387 6.93617 6.98121 7.11577 7.54385 7.69168 7.90561 8.17647 8.31669 8.46027 8.84483 9.00838 9.57213 11.04420 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.030038 B = 0.014921 C = 0.012821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.935276 B = 1876.054632 C = 2183.436475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 C -0.077 4.077 3 O -0.224 6.224 4 C 0.122 3.878 5 N -0.473 5.473 6 C 0.048 3.952 7 C 0.109 3.891 8 H 0.078 0.922 9 C -0.499 4.499 10 H 0.054 0.946 11 C 0.068 3.932 12 N -0.882 5.882 13 Si 0.892 3.108 14 H -0.280 1.280 15 H -0.288 1.288 16 H -0.275 1.275 17 C 0.081 3.919 18 N -0.845 5.845 19 H 0.082 0.918 20 H 0.053 0.947 21 H 0.086 0.914 22 H 0.233 0.767 23 H 0.261 0.739 24 H 0.039 0.961 25 H 0.015 0.985 26 H 0.318 0.682 27 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.302 3.377 -4.518 5.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.128 4.128 3 O -0.112 6.112 4 C -0.104 4.104 5 N -0.202 5.202 6 C -0.073 4.073 7 C 0.089 3.911 8 H 0.096 0.904 9 C -0.537 4.537 10 H 0.072 0.928 11 C -0.135 4.135 12 N -0.520 5.520 13 Si 0.720 3.280 14 H -0.205 1.205 15 H -0.214 1.214 16 H -0.201 1.201 17 C -0.050 4.050 18 N -0.374 5.374 19 H 0.101 0.899 20 H 0.072 0.928 21 H 0.105 0.895 22 H 0.249 0.751 23 H 0.071 0.929 24 H 0.057 0.943 25 H 0.033 0.967 26 H 0.128 0.872 27 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.945 3.459 -4.415 5.688 hybrid contribution 1.012 -0.159 1.151 1.541 sum 1.957 3.300 -3.264 5.037 Atomic orbital electron populations 1.20012 0.84680 1.01971 1.03575 1.23146 0.94648 0.83985 1.11001 1.84265 1.18336 1.37287 1.71285 1.27659 0.85586 0.91961 1.05186 1.70287 1.24678 1.09133 1.16150 1.22507 0.86305 0.99012 0.99480 1.17463 0.98456 0.82792 0.92347 0.90427 1.20850 1.02314 1.34521 0.95991 0.92797 1.24972 0.94967 0.95131 0.98395 1.69919 1.13546 1.40397 1.28099 0.86664 0.78330 0.80933 0.82091 1.20528 1.21363 1.20088 1.21700 0.95672 0.89510 0.98152 1.58690 1.67084 1.04564 1.07053 0.89943 0.92768 0.89498 0.75065 0.92920 0.94296 0.96675 0.87234 0.83658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.87 10.07 36.00 0.36 -0.51 15 2 C -0.08 -1.72 7.39 -35.69 -0.26 -1.98 15 3 O -0.22 -4.64 10.78 5.35 0.06 -4.58 15 4 C 0.12 2.34 13.23 52.09 0.69 3.03 15 5 N -0.47 -11.04 11.29 -11.18 -0.13 -11.17 15 6 C 0.05 1.17 5.60 -82.82 -0.46 0.70 15 7 C 0.11 2.74 2.36 -92.93 -0.22 2.52 15 8 H 0.08 2.09 6.16 -51.93 -0.32 1.77 15 9 C -0.50 -13.59 7.35 -34.44 -0.25 -13.84 15 10 H 0.05 1.50 7.82 -52.49 -0.41 1.09 15 11 C 0.07 1.87 5.45 -17.82 -0.10 1.78 15 12 N -0.88 -24.60 12.91 55.43 0.72 -23.89 15 13 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 15 14 H -0.28 -6.81 7.11 56.52 0.40 -6.40 15 15 H -0.29 -6.85 7.11 56.52 0.40 -6.45 15 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 17 C 0.08 1.79 6.21 -3.83 -0.02 1.76 15 18 N -0.84 -16.92 9.62 -10.37 -0.10 -17.02 15 19 H 0.08 1.66 8.14 -51.93 -0.42 1.24 15 20 H 0.05 0.86 8.14 -51.93 -0.42 0.44 15 21 H 0.09 1.66 7.17 -51.93 -0.37 1.29 15 22 H 0.23 3.06 8.06 -52.48 -0.42 2.63 15 23 H 0.26 7.01 8.31 -40.82 -0.34 6.67 15 24 H 0.04 0.82 8.14 -51.93 -0.42 0.40 15 25 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 15 26 H 0.32 5.27 9.08 -39.30 -0.36 4.91 15 27 H 0.35 7.27 8.11 -39.29 -0.32 6.95 15 LS Contribution 240.38 15.07 3.62 3.62 Total: -1.00 -30.65 240.38 -4.15 -34.80 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -3.03 Total: 8.44 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -0.27 Total: -6.54 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: 0.49 Total: -52.08 kcal Atomic # 8 Polarization: -4.64 SS G_CDS: 0.06 Total: -4.58 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -30.65 -4.15 -34.80 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259934932.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.200 kcal (2) G-P(sol) polarization free energy of solvation -30.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds