Wall clock time and date at job start Mon Mar 30 2020 02:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.34754 * 126.44204 * 2 1 4 4 C 1.33964 * 107.75324 * 180.02562 * 3 2 1 5 5 N 1.30260 * 108.76178 * 359.73591 * 4 3 2 6 6 C 1.34327 * 126.44474 * 180.02562 * 2 1 3 7 7 C 1.50701 * 126.16507 * 359.97438 * 6 2 1 8 8 H 1.09008 * 109.46953 * 359.97438 * 7 6 2 9 9 C 1.50697 * 109.47359 * 119.99454 * 7 6 2 10 10 H 1.08008 * 120.00267 * 0.02562 * 9 7 6 11 11 C 1.37879 * 120.00459 * 180.02562 * 9 7 6 12 12 N 1.31516 * 119.99554 * 0.02562 * 11 9 7 13 13 Si 1.86798 * 120.00058 * 180.02562 * 11 9 7 14 14 H 1.48491 * 109.47537 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.47011 * 120.00386 * 13 11 9 16 16 H 1.48507 * 109.46913 * 239.99447 * 13 11 9 17 17 C 1.52993 * 109.47270 * 239.99796 * 7 6 2 18 18 N 1.46905 * 109.47039 * 64.99898 * 17 7 6 19 19 H 1.09000 * 109.46868 * 269.97408 * 1 2 3 20 20 H 1.09001 * 109.47248 * 29.96673 * 1 2 3 21 21 H 1.08997 * 109.47142 * 149.97274 * 1 2 3 22 22 H 1.08004 * 125.62448 * 179.97438 * 4 3 2 23 23 H 0.96998 * 119.99988 * 180.02562 * 12 11 9 24 24 H 1.09001 * 109.47393 * 305.00180 * 17 7 6 25 25 H 1.08998 * 109.47408 * 184.99825 * 17 7 6 26 26 H 1.00901 * 110.99869 * 56.04956 * 18 17 7 27 27 H 1.00896 * 110.99543 * 180.02562 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3074 1.0840 0.0000 4 6 3.5765 0.6548 -0.0006 5 7 3.5781 -0.6478 0.0048 6 6 2.3050 -1.0806 -0.0005 7 6 1.8545 -2.5187 -0.0006 8 1 0.7652 -2.5582 0.0003 9 6 2.3818 -3.2102 -1.2314 10 1 2.9833 -2.6631 -1.9423 11 6 2.0963 -4.5412 -1.4500 12 7 1.3635 -5.2073 -0.5846 13 14 2.7505 -5.3985 -2.9754 14 1 3.5421 -4.4361 -3.7830 15 1 3.6167 -6.5351 -2.5713 16 1 1.6130 -5.9062 -3.7840 17 6 2.3909 -3.2212 1.2482 18 7 1.7835 -2.6238 2.4450 19 1 -0.3633 -0.0005 1.0277 20 1 -0.3634 0.8903 -0.5133 21 1 -0.3633 -0.8897 -0.5142 22 1 4.4537 1.2848 -0.0011 23 1 1.1629 -6.1438 -0.7382 24 1 3.4737 -3.1049 1.2938 25 1 2.1408 -4.2812 1.2045 26 1 0.7763 -2.6613 2.3964 27 1 2.1222 -3.0707 3.2838 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259934941.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:18 Heat of formation + Delta-G solvation = 12.919881 kcal Electronic energy + Delta-G solvation = -12522.944307 eV Core-core repulsion = 10282.207632 eV Total energy + Delta-G solvation = -2240.736675 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.37777 -35.64660 -33.33042 -32.12063 -31.67654 -28.52922 -25.79249 -23.85621 -22.10807 -20.68723 -19.28746 -16.55285 -16.27279 -15.68866 -14.65643 -14.41582 -14.16488 -13.41219 -12.98106 -12.51737 -12.30261 -11.90893 -11.81912 -11.34247 -10.97215 -10.69046 -10.22119 -10.02546 -9.80091 -9.42255 -9.17034 -8.46838 -7.65038 -7.49939 -6.04210 -4.09376 2.36223 3.28786 3.36724 3.42999 3.59843 3.79993 4.43323 5.01726 5.24182 5.65179 5.77079 5.90142 6.00164 6.08306 6.29642 6.72521 6.86187 6.88458 7.04928 7.34627 7.55892 7.76549 7.95167 8.11400 8.37795 8.46149 8.76148 8.94204 9.54187 11.00213 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.037541 B = 0.012673 C = 0.011422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.663578 B = 2208.918779 C = 2450.882680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C -0.090 4.090 3 O -0.221 6.221 4 C 0.130 3.870 5 N -0.467 5.467 6 C 0.065 3.935 7 C 0.122 3.878 8 H 0.040 0.960 9 C -0.497 4.497 10 H 0.059 0.941 11 C 0.059 3.941 12 N -0.895 5.895 13 Si 0.896 3.104 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.284 1.284 17 C 0.066 3.934 18 N -0.858 5.858 19 H 0.072 0.928 20 H 0.062 0.938 21 H 0.090 0.910 22 H 0.236 0.764 23 H 0.260 0.740 24 H 0.049 0.951 25 H 0.067 0.933 26 H 0.326 0.674 27 H 0.319 0.681 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.997 7.097 2.214 7.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.141 4.141 3 O -0.109 6.109 4 C -0.096 4.096 5 N -0.196 5.196 6 C -0.055 4.055 7 C 0.103 3.897 8 H 0.058 0.942 9 C -0.536 4.536 10 H 0.078 0.922 11 C -0.141 4.141 12 N -0.535 5.535 13 Si 0.724 3.276 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.210 1.210 17 C -0.064 4.064 18 N -0.385 5.385 19 H 0.091 0.909 20 H 0.081 0.919 21 H 0.109 0.891 22 H 0.252 0.748 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.085 0.915 26 H 0.137 0.863 27 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.171 7.270 1.989 7.539 hybrid contribution -0.375 -0.976 -0.615 1.213 sum -0.546 6.293 1.373 6.464 Atomic orbital electron populations 1.20076 0.85063 1.03255 1.02654 1.23004 0.94485 0.84267 1.12341 1.84263 1.18367 1.37014 1.71293 1.27745 0.85503 0.91909 1.04398 1.70314 1.24409 1.09030 1.15848 1.22060 0.86567 0.98324 0.98553 1.17327 0.95844 0.82543 0.93990 0.94176 1.21085 1.32069 0.95097 1.05355 0.92246 1.24961 0.95047 0.97307 0.96798 1.69870 1.38479 1.09650 1.35455 0.86452 0.78692 0.79464 0.82959 1.19731 1.20967 1.21025 1.21969 0.97460 0.99139 0.87789 1.59032 1.10875 1.63479 1.05115 0.90912 0.91884 0.89102 0.74843 0.92984 0.93223 0.91456 0.86303 0.87103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.88 10.07 36.01 0.36 -0.52 15 2 C -0.09 -1.86 7.39 -35.69 -0.26 -2.12 15 3 O -0.22 -4.28 10.78 5.36 0.06 -4.22 15 4 C 0.13 2.40 13.23 52.10 0.69 3.09 15 5 N -0.47 -10.72 11.29 -11.18 -0.13 -10.84 15 6 C 0.06 1.53 5.28 -82.82 -0.44 1.10 15 7 C 0.12 3.11 2.27 -92.93 -0.21 2.90 15 8 H 0.04 1.05 6.81 -51.92 -0.35 0.69 15 9 C -0.50 -13.91 8.55 -34.44 -0.29 -14.20 15 10 H 0.06 1.73 7.74 -52.48 -0.41 1.32 15 11 C 0.06 1.63 5.29 -17.82 -0.09 1.54 15 12 N -0.89 -24.89 11.30 55.43 0.63 -24.27 15 13 Si 0.90 21.48 29.54 -169.99 -5.02 16.45 15 14 H -0.27 -6.57 7.11 56.52 0.40 -6.16 15 15 H -0.28 -6.75 7.11 56.52 0.40 -6.34 15 16 H -0.28 -6.70 7.11 56.52 0.40 -6.29 15 17 C 0.07 1.62 6.00 -3.82 -0.02 1.60 15 18 N -0.86 -17.53 9.34 -10.37 -0.10 -17.63 15 19 H 0.07 1.08 8.14 -51.93 -0.42 0.65 15 20 H 0.06 0.88 8.14 -51.93 -0.42 0.46 15 21 H 0.09 1.54 7.16 -51.93 -0.37 1.17 15 22 H 0.24 2.92 8.06 -52.48 -0.42 2.49 15 23 H 0.26 6.91 8.31 -40.82 -0.34 6.57 15 24 H 0.05 1.29 8.14 -51.93 -0.42 0.87 15 25 H 0.07 1.79 5.96 -51.93 -0.31 1.48 15 26 H 0.33 6.30 8.99 -39.29 -0.35 5.94 15 27 H 0.32 5.78 9.08 -39.29 -0.36 5.43 15 LS Contribution 238.17 15.07 3.59 3.59 Total: -1.00 -31.06 238.17 -4.22 -35.28 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -2.98 Total: 8.27 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -0.27 Total: -6.63 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: 0.40 Total: -52.74 kcal Atomic # 8 Polarization: -4.28 SS G_CDS: 0.06 Total: -4.22 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -31.06 -4.22 -35.28 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259934941.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.197 kcal (2) G-P(sol) polarization free energy of solvation -31.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds