Wall clock time and date at job start Mon Mar 30 2020 02:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.34754 * 126.44204 * 2 1 4 4 C 1.33964 * 107.75324 * 180.02562 * 3 2 1 5 5 N 1.30260 * 108.76178 * 359.73591 * 4 3 2 6 6 C 1.34327 * 126.44474 * 180.02562 * 2 1 3 7 7 C 1.50701 * 126.16507 * 359.97438 * 6 2 1 8 8 H 1.09008 * 109.46953 * 359.97438 * 7 6 2 9 9 C 1.50697 * 109.47359 * 119.99454 * 7 6 2 10 10 H 1.08008 * 120.00267 * 0.02562 * 9 7 6 11 11 C 1.37879 * 120.00459 * 180.02562 * 9 7 6 12 12 N 1.31516 * 119.99554 * 0.02562 * 11 9 7 13 13 Si 1.86798 * 120.00058 * 180.02562 * 11 9 7 14 14 H 1.48491 * 109.47537 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.47011 * 120.00386 * 13 11 9 16 16 H 1.48507 * 109.46913 * 239.99447 * 13 11 9 17 17 C 1.52993 * 109.47270 * 239.99796 * 7 6 2 18 18 N 1.46905 * 109.47039 * 64.99898 * 17 7 6 19 19 H 1.09000 * 109.46868 * 269.97408 * 1 2 3 20 20 H 1.09001 * 109.47248 * 29.96673 * 1 2 3 21 21 H 1.08997 * 109.47142 * 149.97274 * 1 2 3 22 22 H 1.08004 * 125.62448 * 179.97438 * 4 3 2 23 23 H 0.96998 * 119.99988 * 180.02562 * 12 11 9 24 24 H 1.09001 * 109.47393 * 305.00180 * 17 7 6 25 25 H 1.08998 * 109.47408 * 184.99825 * 17 7 6 26 26 H 1.00901 * 110.99869 * 56.04956 * 18 17 7 27 27 H 1.00896 * 110.99543 * 180.02562 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3074 1.0840 0.0000 4 6 3.5765 0.6548 -0.0006 5 7 3.5781 -0.6478 0.0048 6 6 2.3050 -1.0806 -0.0005 7 6 1.8545 -2.5187 -0.0006 8 1 0.7652 -2.5582 0.0003 9 6 2.3818 -3.2102 -1.2314 10 1 2.9833 -2.6631 -1.9423 11 6 2.0963 -4.5412 -1.4500 12 7 1.3635 -5.2073 -0.5846 13 14 2.7505 -5.3985 -2.9754 14 1 3.5421 -4.4361 -3.7830 15 1 3.6167 -6.5351 -2.5713 16 1 1.6130 -5.9062 -3.7840 17 6 2.3909 -3.2212 1.2482 18 7 1.7835 -2.6238 2.4450 19 1 -0.3633 -0.0005 1.0277 20 1 -0.3634 0.8903 -0.5133 21 1 -0.3633 -0.8897 -0.5142 22 1 4.4537 1.2848 -0.0011 23 1 1.1629 -6.1438 -0.7382 24 1 3.4737 -3.1049 1.2938 25 1 2.1408 -4.2812 1.2045 26 1 0.7763 -2.6613 2.3964 27 1 2.1222 -3.0707 3.2838 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259934941.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:18 Heat of formation + Delta-G solvation = -12.428337 kcal Electronic energy + Delta-G solvation = -12524.043488 eV Core-core repulsion = 10282.207632 eV Total energy + Delta-G solvation = -2241.835856 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.93843 -37.49185 -35.02251 -34.10658 -33.18691 -30.35871 -27.36176 -25.85043 -23.82085 -22.29544 -21.03930 -18.55002 -17.88319 -17.28545 -16.62230 -16.16672 -15.70231 -15.24783 -14.55295 -14.12221 -13.87361 -13.74502 -13.34245 -13.11928 -12.88123 -12.57396 -12.04349 -11.91759 -11.71988 -11.22594 -11.01751 -10.54625 -9.37255 -9.18278 -8.12549 -6.25619 0.84742 1.38102 1.40629 1.52374 2.13822 2.16374 2.43963 3.11871 3.65596 4.06293 4.25926 4.34621 4.53555 4.75420 4.88750 4.92691 5.04956 5.30507 5.39697 5.44284 5.68356 5.83173 5.89994 6.21602 6.52438 6.70626 6.89409 7.16956 7.40498 8.89532 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.037541 B = 0.012673 C = 0.011422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.663578 B = 2208.918779 C = 2450.882680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C -0.087 4.087 3 O -0.217 6.217 4 C 0.153 3.847 5 N -0.517 5.517 6 C 0.025 3.975 7 C 0.126 3.874 8 H 0.027 0.973 9 C -0.519 4.519 10 H 0.038 0.962 11 C 0.019 3.981 12 N -0.912 5.912 13 Si 0.954 3.046 14 H -0.277 1.277 15 H -0.278 1.278 16 H -0.273 1.273 17 C 0.084 3.916 18 N -0.848 5.848 19 H 0.091 0.909 20 H 0.091 0.909 21 H 0.079 0.921 22 H 0.290 0.710 23 H 0.264 0.736 24 H 0.025 0.975 25 H 0.043 0.957 26 H 0.336 0.664 27 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.094 8.207 2.183 8.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.139 4.139 3 O -0.105 6.105 4 C -0.073 4.073 5 N -0.246 5.246 6 C -0.094 4.094 7 C 0.107 3.893 8 H 0.045 0.955 9 C -0.558 4.558 10 H 0.056 0.944 11 C -0.180 4.180 12 N -0.551 5.551 13 Si 0.780 3.220 14 H -0.202 1.202 15 H -0.204 1.204 16 H -0.199 1.199 17 C -0.046 4.046 18 N -0.376 5.376 19 H 0.110 0.890 20 H 0.110 0.890 21 H 0.098 0.902 22 H 0.305 0.695 23 H 0.073 0.927 24 H 0.044 0.956 25 H 0.061 0.939 26 H 0.147 0.853 27 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.284 8.369 1.975 8.604 hybrid contribution -0.309 -1.247 -0.573 1.407 sum -0.594 7.122 1.402 7.283 Atomic orbital electron populations 1.20206 0.82505 1.04090 1.04120 1.23520 0.96032 0.83758 1.10567 1.84303 1.18680 1.36354 1.71151 1.28907 0.86450 0.91212 1.00682 1.70225 1.24635 1.11481 1.18272 1.21834 0.87744 0.98055 1.01780 1.17095 0.94789 0.84197 0.93247 0.95499 1.21235 1.32435 0.95771 1.06357 0.94366 1.25624 0.95211 0.97737 0.99391 1.69956 1.38769 1.09899 1.36497 0.85559 0.78337 0.78254 0.79823 1.20199 1.20375 1.19881 1.21571 0.96056 0.97713 0.89299 1.58871 1.11422 1.62958 1.04375 0.89040 0.89036 0.90210 0.69472 0.92701 0.95592 0.93941 0.85271 0.85407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.63 10.07 71.24 0.72 -0.91 15 2 C -0.09 -3.49 7.39 24.79 0.18 -3.30 15 3 O -0.22 -7.83 10.78 -3.72 -0.04 -7.87 15 4 C 0.15 5.26 13.23 130.48 1.73 6.99 15 5 N -0.52 -23.45 11.29 -304.07 -3.43 -26.88 15 6 C 0.02 1.16 5.28 41.26 0.22 1.38 15 7 C 0.13 6.53 2.27 -12.29 -0.03 6.50 15 8 H 0.03 1.44 6.81 -2.38 -0.02 1.42 15 9 C -0.52 -29.74 8.55 25.60 0.22 -29.52 15 10 H 0.04 2.29 7.74 -2.91 -0.02 2.27 15 11 C 0.02 1.07 5.29 84.65 0.45 1.52 15 12 N -0.91 -51.19 11.30 21.45 0.24 -50.95 15 13 Si 0.95 44.35 29.54 68.60 2.03 46.37 15 14 H -0.28 -12.96 7.11 99.48 0.71 -12.25 15 15 H -0.28 -12.60 7.11 99.48 0.71 -11.90 15 16 H -0.27 -12.17 7.11 99.48 0.71 -11.46 15 17 C 0.08 4.21 6.00 86.30 0.52 4.73 15 18 N -0.85 -34.27 9.34 -186.72 -1.74 -36.01 15 19 H 0.09 2.49 8.14 -2.39 -0.02 2.47 15 20 H 0.09 2.29 8.14 -2.39 -0.02 2.27 15 21 H 0.08 2.66 7.16 -2.39 -0.02 2.64 15 22 H 0.29 5.95 8.06 -2.91 -0.02 5.92 15 23 H 0.26 14.02 8.31 -92.71 -0.77 13.24 15 24 H 0.03 1.38 8.14 -2.39 -0.02 1.36 15 25 H 0.04 2.31 5.96 -2.39 -0.01 2.30 15 26 H 0.34 12.70 8.99 -89.69 -0.81 11.90 15 27 H 0.33 11.83 9.08 -89.70 -0.81 11.02 15 Total: -1.00 -67.40 238.17 0.63 -66.77 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: -0.42 Total: 21.20 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: 4.00 Total: -12.63 kcal Atomic # 7 Polarization: -108.91 SS G_CDS: -4.94 Total: -113.84 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: -0.04 Total: -7.87 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Total: -67.40 0.63 -66.77 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259934941.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.343 kcal (2) G-P(sol) polarization free energy of solvation -67.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds