Wall clock time and date at job start Mon Mar 30 2020 02:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34327 * 126.44885 * 2 1 4 4 N 1.34479 * 107.66828 * 179.76720 * 3 2 1 5 5 C 1.30252 * 108.70210 * 0.42129 * 4 3 2 6 6 C 1.50703 * 125.61732 * 179.83992 * 5 4 3 7 7 H 1.09006 * 109.46581 * 179.69689 * 6 5 4 8 8 C 1.50695 * 109.47070 * 59.69512 * 6 5 4 9 9 H 1.08001 * 119.99722 * 269.76511 * 8 6 5 10 10 C 1.37873 * 120.00056 * 89.76702 * 8 6 5 11 11 N 1.31514 * 120.00330 * 6.94887 * 10 8 6 12 12 Si 1.86801 * 120.00133 * 186.94959 * 10 8 6 13 13 H 1.48498 * 109.47084 * 89.99781 * 12 10 8 14 14 H 1.48504 * 109.47296 * 209.99821 * 12 10 8 15 15 H 1.48504 * 109.46970 * 330.00045 * 12 10 8 16 16 C 1.52998 * 109.46810 * 299.69186 * 6 5 4 17 17 N 1.46906 * 109.46822 * 185.30482 * 16 6 5 18 18 O 1.33965 * 108.76022 * 359.57791 * 5 4 3 19 19 H 1.08999 * 109.47369 * 269.97652 * 1 2 3 20 20 H 1.09008 * 109.46791 * 29.97518 * 1 2 3 21 21 H 1.08996 * 109.47616 * 149.97356 * 1 2 3 22 22 H 1.08004 * 126.16201 * 0.02562 * 3 2 1 23 23 H 0.96997 * 120.00419 * 180.02562 * 11 10 8 24 24 H 1.08994 * 109.47471 * 305.30169 * 16 6 5 25 25 H 1.08998 * 109.46945 * 65.30929 * 16 6 5 26 26 H 1.00895 * 110.99729 * 56.04718 * 17 16 6 27 27 H 1.00894 * 111.00139 * 180.02562 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0805 0.0000 4 7 3.5782 0.6476 0.0052 5 6 3.5765 -0.6549 -0.0007 6 6 4.8004 -1.5342 -0.0013 7 1 4.4958 -2.5809 -0.0014 8 6 5.6231 -1.2507 1.2290 9 1 6.3930 -0.4937 1.2011 10 6 5.3931 -1.9575 2.3902 11 7 4.5536 -2.9698 2.3885 12 14 6.2739 -1.4774 3.9660 13 1 5.4582 -0.4806 4.7050 14 1 6.4682 -2.6827 4.8115 15 1 7.5956 -0.8872 3.6342 16 6 5.6350 -1.2458 -1.2507 17 7 6.7594 -2.1889 -1.3169 18 8 2.3074 -1.0841 -0.0005 19 1 -0.3634 -0.0004 1.0276 20 1 -0.3633 0.8903 -0.5135 21 1 -0.3634 -0.8897 -0.5142 22 1 1.9823 2.1112 0.0004 23 1 4.3914 -3.4669 3.2055 24 1 5.0123 -1.3600 -2.1379 25 1 6.0181 -0.2264 -1.2043 26 1 6.4325 -3.1432 -1.2958 27 1 7.3265 -2.0186 -2.1339 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259966238.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:20 Heat of formation + Delta-G solvation = -14.538443 kcal Electronic energy + Delta-G solvation = -12369.704520 eV Core-core repulsion = 10127.777163 eV Total energy + Delta-G solvation = -2241.927357 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.96122 -37.20971 -35.32216 -34.35709 -33.22385 -30.80018 -27.14790 -26.05474 -23.79057 -22.33494 -21.43756 -18.67998 -17.86927 -17.38412 -16.65125 -16.22653 -15.43981 -15.35246 -14.45334 -14.28134 -14.07709 -13.80760 -13.45714 -13.05829 -12.79858 -12.70151 -12.51959 -12.08980 -11.55457 -11.46139 -11.14182 -10.66941 -9.37020 -9.26474 -8.22204 -6.28162 0.77475 1.38638 1.40083 1.51748 2.00775 2.08498 2.41351 3.12149 3.62967 4.02879 4.10777 4.31649 4.37689 4.50417 4.65287 4.71155 4.88869 4.89166 5.32236 5.36949 5.47163 5.63706 5.75617 6.09534 6.44218 6.80403 6.86222 7.16306 7.36781 8.86033 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.029713 B = 0.014024 C = 0.011117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.132218 B = 1996.115676 C = 2518.111674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C -0.095 4.095 3 C -0.066 4.066 4 N -0.526 5.526 5 C 0.219 3.781 6 C 0.118 3.882 7 H 0.052 0.948 8 C -0.481 4.481 9 H 0.054 0.946 10 C 0.015 3.985 11 N -0.916 5.916 12 Si 0.957 3.043 13 H -0.284 1.284 14 H -0.277 1.277 15 H -0.263 1.263 16 C 0.101 3.899 17 N -0.836 5.836 18 O -0.230 6.230 19 H 0.086 0.914 20 H 0.118 0.882 21 H 0.078 0.922 22 H 0.206 0.794 23 H 0.265 0.735 24 H 0.012 0.988 25 H 0.059 0.941 26 H 0.341 0.659 27 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.508 3.631 -5.477 8.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.148 4.148 3 C -0.204 4.204 4 N -0.255 5.255 5 C 0.012 3.988 6 C 0.098 3.902 7 H 0.070 0.930 8 C -0.519 4.519 9 H 0.073 0.927 10 C -0.185 4.185 11 N -0.554 5.554 12 Si 0.782 3.218 13 H -0.211 1.211 14 H -0.202 1.202 15 H -0.188 1.188 16 C -0.030 4.030 17 N -0.367 5.367 18 O -0.118 6.118 19 H 0.104 0.896 20 H 0.137 0.863 21 H 0.097 0.903 22 H 0.223 0.777 23 H 0.074 0.926 24 H 0.030 0.970 25 H 0.077 0.923 26 H 0.154 0.846 27 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.808 4.147 -4.682 7.889 hybrid contribution -0.730 -0.554 0.174 0.933 sum -5.538 3.593 -4.508 7.994 Atomic orbital electron populations 1.20352 0.81076 1.05391 1.04266 1.24321 0.96922 0.84591 1.08973 1.23580 0.87868 1.01379 1.07537 1.70358 1.23693 1.10013 1.21448 1.28227 0.84075 0.91087 0.95382 1.17515 0.84072 0.92929 0.95715 0.93009 1.20869 1.16384 1.19718 0.94893 0.92727 1.25793 0.96064 0.94367 1.02283 1.70031 1.37132 1.19505 1.28756 0.85564 0.79226 0.77734 0.79254 1.21071 1.20208 1.18769 1.21396 0.91332 0.96631 0.93677 1.58305 1.23518 1.07044 1.47852 1.84469 1.19069 1.38098 1.70169 0.89560 0.86346 0.90288 0.77739 0.92649 0.96959 0.92259 0.84582 0.83929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.32 10.43 71.24 0.74 -0.58 15 2 C -0.10 -3.67 7.39 24.79 0.18 -3.49 15 3 C -0.07 -2.61 11.80 83.39 0.98 -1.63 15 4 N -0.53 -25.70 11.29 -303.83 -3.43 -29.13 15 5 C 0.22 11.26 6.83 88.34 0.60 11.86 15 6 C 0.12 6.13 2.48 -12.29 -0.03 6.10 15 7 H 0.05 2.92 7.37 -2.38 -0.02 2.90 15 8 C -0.48 -27.21 8.02 25.60 0.21 -27.00 15 9 H 0.05 3.16 7.82 -2.91 -0.02 3.14 15 10 C 0.01 0.84 5.45 84.65 0.46 1.30 15 11 N -0.92 -53.94 12.84 21.45 0.28 -53.66 15 12 Si 0.96 45.44 29.54 68.60 2.03 47.46 15 13 H -0.28 -13.53 7.11 99.48 0.71 -12.82 15 14 H -0.28 -12.61 7.11 99.48 0.71 -11.90 15 15 H -0.26 -12.15 7.11 99.48 0.71 -11.44 15 16 C 0.10 4.37 6.14 86.30 0.53 4.90 15 17 N -0.84 -31.72 9.35 -186.72 -1.75 -33.47 15 18 O -0.23 -11.21 10.78 -3.75 -0.04 -11.25 15 19 H 0.09 1.92 8.14 -2.39 -0.02 1.90 15 20 H 0.12 2.00 8.14 -2.38 -0.02 1.98 15 21 H 0.08 1.79 8.14 -2.39 -0.02 1.77 15 22 H 0.21 6.11 8.06 -2.91 -0.02 6.09 15 23 H 0.26 14.79 8.31 -92.71 -0.77 14.02 15 24 H 0.01 0.49 8.14 -2.39 -0.02 0.47 15 25 H 0.06 2.65 8.14 -2.39 -0.02 2.63 15 26 H 0.34 12.50 8.99 -89.70 -0.81 11.70 15 27 H 0.35 10.40 9.08 -89.70 -0.81 9.58 15 Total: -1.00 -68.89 244.01 0.33 -68.55 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: -0.43 Total: 20.03 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: 3.68 Total: -8.52 kcal Atomic # 7 Polarization: -111.37 SS G_CDS: -4.90 Total: -116.27 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: -0.04 Total: -11.25 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -68.89 0.33 -68.55 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259966238.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.015 kcal (2) G-P(sol) polarization free energy of solvation -68.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds